京都大学 / 新制・課程博士 / 博士(理学) / 甲第23734号 / 理博第4824号 / 新制||理||1690(附属図書館) / 京都大学大学院理学研究科化学専攻 / (主査)教授 依光 英樹, 教授 若宮 淳志, 教授 時任 宣博 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DGAM

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Dans ce manuscrit, une voie atome économique d'un robuste amphiphile polyols à base de alkyle chaîne liée à liaison C-C ont été développés, ce qui est plus stable pour des applications plus larges. Ce processus implique l'utilisation de matières premières renouvelables et relativement peu coûteuses. Des cétoses tels que la 1,3-dihydroxyacétone et le D-fructose ont été utilisés comme substrats avec des aldéhydes comme agents d'alkylation sans aucune étape de protection-déprotection. La synthèse a été divisée en deux étapes, dans la première étape, les cétoses déprotonées réagissent avec les électrophiles aldéhydes pour former les intermédiaires hydroxycétones. Ensuite, une seconde étape d'hydrogénation avec un catalyseur du ruthénium sur alumine sous pression d'hydrogène a donné accès aux polyols alkylés. Le rendement global de ce procédé en deux étapes est modéré compte tenu de la difficulté de faire réagir une partie fortement hydrophobe avec une partie fortement hydrophile. Ensuite, ces adduits de tétraols obtenus avec la 1,3-dihydroxyacétone ont également été évalués en tant que tensioactifs en effectuant des tests physico-chimiques (CMC, point Krafft et Phase Inverse Temperature). Les résultats ont montré que ces nouveaux agents tensioactifs liés à la liaison C-C sont aussi efficaces que d'autres agents tensioactifs disponibles dans le commerce en diminuant la tension de surface, ce qui est une propriété très attrayante pour des applications potentielles / In this manuscript, an atom economic route of C-C bond based surfactants has been developed. They are more stable for broader applications. This process involves the use of renewable and relatively low cost raw materials. Ketoses such as 1,3-dihydroxyacetone and D-fructose were used as substrates with aldehydes as alkylation agents without any protection-deprotection step. The synthesis has been divided into two steps, in the first step the deprotonated ketoses react with the aldehydes electrophiles to form the hydroxyketone intermediates. Then, a second step of hydrogenation with Ruthenium on alumina catalyst under hydrogen pressure gave access to the alkylated polyols. The overall yield of this two-step process is moderate considering the difficulty of reacting a highly hydrophobic part with a highly hydrophilic part. Then these tetraols adducts obtained with 1,3-dihydrdoxyacetone were also evaluated as surfactants by making physico-chemical tests (CMC, Krafft point and Phase Inverse Temperature). Results have exhibited this novel C-C bond connected surfactants perform as efficient as other commercially available surfactants in decreasing the surface tension which is a very attractive property for potential applications

Diverse biological activities of polyketide natural products are often associated with specific structural motifs, biosynthetically introduced after construction of the polyketide core. Therefore, investigation of such "post-polykektide synthase (PKS)" modifications is important, and the accumulated knowledge on these processes can be applied for combinatorial biosynthesis to generate new polyketide derivatives with enhanced biological activities. In addition to the practical value, a lot of unprecedented chemical mechanisms can be found in the enzymes involved therein, which will significantly advance our understanding of enzyme catalysis. The works described in this dissertation focus on elucidating a number of post-PKS modifications involved in the biosynthesis of an insecticidal polyketide, spinosyn A, in Saccharopolyspora spinosa. First, three methyltransferases, SpnH, SpnI, and SpnK, responsible for the modification of the rhamnose moiety, have been investigated to verify their functions and to study how they are coordinated to achieve the desired level of methylation of rhamnose. In vitro assays using purified enzymes not only established that SpnH, SpnI, and SpnK are the respective rhamnose 4ʹ-, 2ʹ-, and 3ʹ-O-methyltransferase, but also validated their roles in the permethylation process of spinosyn A. Investigation of the order of the methylation events revealed that only one route catalyzed by SpnI, SpnK, and SpnH in sequence is productive for the permethylation of the rhamnose moiety, which is likely achieved by the proper control of the expression levels of the methyltransferase genes involved in vivo. The key structural feature of spinosyn A is the presence of the unique tetracyclic architecture likely derived from the monocyclic PKS product. To elucidate this "cross-bridging" process, which had been hypothesized to involve four enzymes, SpnF, SpnJ, SpnL, and SpnM, the presumed polyketide substrate was chemically synthesized using Julia-Kocienski olefination, Stille cross-coupling, and Yamaguchi macrolactonization as key reactions. Incubation of the synthesized substrate with SpnJ produced a new product where the 15-OH group of the substrate is oxidized to the ketone. Next, it was demonstrated that incubation of this ketone intermediate with SpnM produces a tricyclic compound, via a transient monocyclic intermediate with high degree of unsaturation. Whereas it was initially thought that SpnM catalyzes both dehydration and [4+2] cycloaddition in sequence, detailed kinetic analysis revealed that SpnM is only responsible for the dehydration step, and the [4+2] cycloaddition step is indeed catalyzed by SpnF. Finally, successful conversion of the tricyclic intermediate to the tetracyclic core was demonstrated using SpnL. Proposed chemical mechanisms of SpnF and SpnL, Diels-Alder and Rauhut-Currier reactions, respectively, are interesting because enzymes capable of catalyzing these reactions have yet to be characterized in vitro. This work not only establishes the biosynthetic pathway for constructing the spinosyn tetracyclic core, but also epitomizes the significance of the post-PKS modification as a rich source of new enzyme catalysis. / text

The catalytic activation of enones in C-C bond forming processes represents a promising alternative to the prefabrication of chemically labile enols and enolates. Through the use of a (diketonato)cobalt/silane catalyst system, we have devised highly diastereoselective aldol and Michael cycloreductions (J. Am. Chem. Soc. 2001, 123, 5112). Modulation of the catalyst system has enabled the first intramolecular metal-catalyzed alkene (2+2)cycloaddition (J. Am. Chem. Soc. 2001, 123, 6716). Finally, the concept of catalytic nucleophilic enone activation embodied by the Morita-Baylis- Hillman and Rauhut Currier reactions has been utilized to develop an organic catalyst system for the cycloisomerization of bis-enones, i.e. an intramolecular Rauhut Currier reaction (J. Am. Chem. Soc. 2002, 124, 2402). Notably, this protocol allowed for the selective "crossed" cyclization of unsymmetrical bis-enone substrates. / text

<p>  </p> <p>Biosynthesis of fatty acids and specialized metabolites, such as polyketides, is dependent on the C-C bond forming enzymatic activity of carboxylases and <u>k</u>eto<u>s</u>ynthases (KS). Carboxylases and KS perform complex carbon-carbon bond forming reactions via a ping-pong mechanism; the catalytic interactions of which are still unclear. The KS reaction involves the Claisen condensation of an acylated enzyme with a malonyl-thioester, driven forward by the energy of the malonyl-thioester decarboxylation. Similarly, the carboxylase proceeds via a carboxyl-biotin-enzyme intermediate, and a subsequent C-C bond forming reaction. Engineering the substrate specificity of these enzyme involved in producing polyketides is sought after for the purpose of producing novel, derivative polyketides. These derivative polyketides may have serve as effective new antibiotics, of which discovery has waned. Unfortunately, incomplete understanding of protein-protein interactions, conformational changes, and substrate orientation in catalysis leads to not well informed engineering attempts. A challenge in deducing the catalytic details of enzymes acting on malonyl-thioesters in general is the hyper-reactivity of their β-ketoacid and thioester substrates, which are prone to hydrolysis and decarboxylation. Many structures of malonyl-CoA bound enzymes feature hydrolysis of the thioester, preventing determination of enzyme:substrate interactions in structure-function studies. To work around this problem of innate reactivity, groups have synthesized a variety of acyl-thioester analogs for probing the details of enzyme catalysis with mixed success. The success of these enzyme:analog mechanistic studies appears to hinge upon the similarity of the analog to the natural substrate. Here, we demonstrate the synthesis of near-natural, acyl-thioester analogs, featuring single atom substitutions. Using a novel UV-vis assay, we have determined <em>K</em>i values of our analogs with paradigmatic KSs <em>E. coli</em> FabH. These <em>K</em>i values are marginally higher than the substrate <em>K</em>m values, suggesting the KSs bind the analogs as they would natural substrates. Using this information, we have conducted preliminary X-ray crystallography experiments to determine the carboxylase:analog and KS:analog catalytic interactions, which will allow for new insight into debated C-C bond forming catalytic details. The information presented in this thesis and additional studies on protein-protein interactions can be leveraged into informed engineering studies of PKS enzymes.</p>

The functionalisation of C-H bonds has been widely studied in organic synthesis. This work presents the results of investigation into two areas of current research, copper-catalysed aromatic C-H functionalisation and rhodium-catalysed hydroacylation. Chapter 1 presents the development of palladium- and copper-catalysed aromatic C-H functionalisation with particular attention paid to regiocontrol. Chapter 2 describes the development of copper-catalysed cross-coupling of perfluorinated arenes and alkenyl halides along with efforts to expand this methodology to a more general reaction. In Chapter 3 the development of chelation-controlled rhodium-catalysed hydroacylation is discussed. Chapter 4 outlines the utilisation of amino acid derived N-methylthiomethyl aldehydes in rhodium-catalysed hydroacylation methodology.

The selective transformation of carbon-carbon and carbon-hydrogen bonds represents an attractive approach and rapidly developing frontier in synthesis. Benefits include step and atom economy, as well as the ubiquitous presence in organic molecules. Advances to this exciting realm of synthesis are described in this thesis with an emphasis on the development of catalytic, selective reactions under mild conditions. Additionally some applications of the methodologies are demonstrated. In Chapter 1, the first examples of inter-and intramolecular enantioselective conjugate alkenylations employing organostannanes are reported. A chiral, cationic Rh(I)-diene complex catalyzed the enantioselective conjugate addition of alkenylstannanes to benzylidene Meldrum’s acids in moderate enantiomeric ratios and yields. Notably, the cationic and anhydrous conditions required for the asymmetric alkenylation are complementary to existing protocols employing other alkenylmetals. In Chapter 2, a domino, one-pot formation of tetracyclic ketones from benzylidene Meldrum’s acids using Sc(OTf)3 via a [1,5]-hydride shift/cyclization/Friedel-Crafts acylation sequence is described. Respectable yields were obtained in accord with the ability to convert to the spiro-intermediate, and considering the formation of three new bonds: one C-H and two C-C bonds. An intriguing carbon-carbon bond cleavage was also serendipitously discovered as part of a competing reaction pathway. In Chapter 3, the pursuit of novel C-H bond transformations led to the development of non-carbonyl-stabilized rhodium carbenoid Csp3-H insertions. This methodology enabled the rapid synthesis of N-fused indolines and related complex heterocycles from N-aziridinylimines. By using a rhodium carboxamidate catalyst, competing processes were minimized and C-H insertions were found to proceed in moderate to high yields. Also disclosed is an expedient total synthesis of (±)-cryptaustoline, a dibenzopyrrocoline alkaloid, which highlights the methodology. In Chapter 4, the Lewis acid promoted substitution of Meldrum’s acid discovered during the course of the domino reaction was explored in detail. The protocol transforms unstrained quaternary and tertiary benzylic Csp3-Csp3 bonds into Csp3-X bonds (X = C, N, H) and has even shown to be advantageous with regards to synthetic utility over the use of alternative leaving groups for substitutions at quaternary benzylic centers. This reaction has a broad scope both in terms of suitable substrates and nucleophiles with good to excellent yields obtained (typically >90%).

Lanthanum (La)-promoted hydrocarbon activation reactions were carried out in a laser vaporization metal cluster beam source. Reaction products were identified by time-of-flight mass spectrometry, and the approximate ionization thresholds of La-hydrocarbon complexes were located with photoionization efficiency spectroscopy. The accurate ionization energies and vibrational frequencies of the La complexes were measured using mass analyzed threshold ionization (MATI) spectroscopy. Their molecular structures and electronic states were investigated by combing the MATI spectroscopic measurements with quantum chemical and Franck-Condon factor calculations. In this dissertation, La-mediated C-H and C-C bond activation reactions were investigated for several small alkynes (acetylene, propyne) and alkenes (propene, 1,3-butadiene, 1-butene). The C-H bond activation was observed for both alkynes and alkenes and the C-C bond activation for alkenes. The metal-hydrocarbon intermediates formed by the C-H or C-C bond cleavage reacted further with one or more parent hydrocarbon molecules to produce larger species by C-C bond coupling reactions. Structural isomers of the intermediates and products were identified within an energy range of several kilocalories per mole. Reaction pathways for the intermediate and product formations were studied by theoretical calculations. The ground electron configuration of La atom is 4d16s2.Upon the hydrocarbon coordination, La atom is excited to a 4d26s1 configuration to facilitate the formation of two La-C bonds. After the metal-hydrocarbon complex formation, only one electron is left in the 6s orbital of the metal center. Therefore, the most stable electronic state of the La complexes studied in this work is in a doublet spin state. Ionization of the doublet state yields a preferred singlet ion state. Although La is in the formal oxidation state of +2, the ionization energies of the metal-complexes are significantly lower than that of the free atom. This observation suggests that the concept of the formal oxidation state widely used in chemistry textbooks is not useful in predicting the change of the ionization energy of a metal atom upon ligation. Moreover, ionization has a very small effect on the geometry of the hydrocarbon fragment in each complex but significantly reduces the La-C distances as a result of an additional charge interaction.