Orientador: Aricio Xavier Linhares / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-04T02:54:55Z (GMT). No. of bitstreams: 1 Thyssen_PatriciaJacqueline_D.pdf: 2658711 bytes, checksum: 6ae5d4aeb98843b0a14d74606d3f57c1 (MD5) Previous issue date: 2005 / Resumo: A correta identificação e avaliação da idade de insetos envolvidos com a decomposição de cadáveres é de suma importância para a estimativa do intervalo pós-morte (IPM) na área das ciências forenses, particularmente quando o IPM é baseado em informações sobre o ciclo de vida de insetos necrófagos. Entretanto, a análise destes parâmetros em insetos, especialmente quando se encontram em seus estágios imaturos, é difícil mesmo para taxonomistas bem treinados. Além das minúsculas diferenças morfológicas que há entre várias espécies, algumas variáveis tais como temperatura e substâncias tóxicas podem afetar o seu tempo de desenvolvimento gerando um erro no cálculo do IPM. Entre os insetos envolvidos neste processo, as larvas de dípteros da família Calliphoridae são freqüentemente as mais predominantes consumidoras de carcaça e estão presentes em todos os estágios de decomposição. Assim, este estudo teve como objetivo caracterizar morfologicamente e avaliar o tempo de desenvolvimento e as exigências térmicas das formas imaturas de duas espécies de dípteros em diferentes temperaturas: Hemilucilia segmentaria (Fabricius) e Hemilucilia semidiaphana (Rondani) (Calliphoridae). Todos os experimentos foram realizados em câmaras climáticas com temperaturas controladas em 10, 15, 20, 25, 30 e 35ºC, com fotoperíodo de 12 horas e umidade relativa de 70%. Dieta artificial própria para larvas foi oferecida para que estas completassem seu desenvolvimento. Neste estudo, além da descrição e caracterização morfológica tradicional, também foram utilizadas as técnicas da reação em cadeia da polimerase, associada ao polimorfismo baseado no comprimento do fragmento de restrição (PCR-RFLP), para a identificação das duas espécies / Abstract: The correct identification and age determination of insect species involved in cadaver decomposition is of particular importance in estimating the post-mortem interval (PMI) in forensic sciences, particularly since the PMI is based on information on the life cycle of necrophagous insects. However, the correct identification of several insects species, especially in their immature stages, is difficult even for experienced taxonomists. In addition to the minuscule morphological differences between several species, there are some variables such as temperature and toxic substances that may affect the developmental time of insects, generating errors in the estimate of the PMI. Among the insects that are involved in cadaver decomposition, maggots of blowflies (Calliphoridae) are often the most important consumers of carrion and are present in all stages of decomposition. Thus, this study aimed to characterize morphologically and to evaluate the developmental time and the thermal requirements of the immature stages of two species of blowflies reared in different temperatures: Hemilucilia segmentaria (Fabricius) e Hemilucilia semidiaphana (Rondani) (Calliphoridae). All experiments were done in growth chambers with temperatures set at 10, 15, 20, 25, 30 and 35ºC, photophase of 12 hours and relative humidity at 70%. The maggots were reared using an artificial diet for their complete development. In addition to traditional morphological description and characterization of the immatures, the usefulness of the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) to identify the two species mentioned above was also assessed in this study / Doutorado / Parasitologia / Doutor em Parasitologia

Submitted by Edisangela Bastos (edisangela@ufpa.br) on 2013-02-15T18:34:02Z No. of bitstreams: 2 license_rdf: 23898 bytes, checksum: e363e809996cf46ada20da1accfcd9c7 (MD5) Dissertacao_CaliforideosDipteraOestroidea.pdf: 1919056 bytes, checksum: 32f1d3a07cb2ded2293a8db4aeeba3d6 (MD5) / Approved for entry into archive by Ana Rosa Silva(arosa@ufpa.br) on 2013-02-18T15:01:07Z (GMT) No. of bitstreams: 2 license_rdf: 23898 bytes, checksum: e363e809996cf46ada20da1accfcd9c7 (MD5) Dissertacao_CaliforideosDipteraOestroidea.pdf: 1919056 bytes, checksum: 32f1d3a07cb2ded2293a8db4aeeba3d6 (MD5) / Made available in DSpace on 2013-02-18T15:01:07Z (GMT). No. of bitstreams: 2 license_rdf: 23898 bytes, checksum: e363e809996cf46ada20da1accfcd9c7 (MD5) Dissertacao_CaliforideosDipteraOestroidea.pdf: 1919056 bytes, checksum: 32f1d3a07cb2ded2293a8db4aeeba3d6 (MD5) Previous issue date: 2012 / O presente estudo teve como objetivo conhecer a fauna e o padrão de distribuição temporal de califorídeos que colonizam cadáveres suínos em uma área de cerrado na Reserva Ecológica do Inhamum (REI), Caxias, MA. Foram realizados dois experimentos, um no período seco (julho a agosto/2010) e o outro no período chuvoso (março a abril/2011). Em cada experimento foram utilizados três suínos de 12 kg cada, colocados em gaiola de metal. Sobre cada gaiola foi colocada uma “armadilha do tipo suspensa” para capturar os califorídeos adultos que visitassem os cadáveres suínos. Bandejas com serragem foram acopladas debaixo das gaiolas, para coleta de imaturos. Foram obtidos 51.234 espécimes de califorídeos, sendo 25.093 de adultos coletados e 26.141 de adultos criados. Foram identificadas as seguintes espécies: Chloroprocta idioidea (Robineau-Desvoidy, 1830) Chrysomya albiceps (Wiedemann, 1819), Chrysomya megacephala (Fabricius, 1794), Chrysomya rufifacies (Macquart, 1843), Cochliomyia macellaria (Fabricius, 1775), Hemilucilia benoisti Séguy, 1925, Hemilucilia segmentaria (Fabricius, 1805), Hemilucilia townsendi Shannon, 1926, Lucilia eximia (Wiedemann, 1818) e Lucilia sp1. Chrysomya rufifacies e H. townsendi são novos registros para o Brasil. Cochliomyia macellaria e C. idioidea foram as mais abundantes, em relação aos adultos coletados, enquanto que C. albiceps e C. rufifacies foram as mais abundantes entre os adultos criados. Apenas as espécies do gênero Hemilucilia não se criaram nos cadáveres suínos. A duração da decomposição dos cadáveres suínos foi, em média, de 10 dias e não variou entre os perídos seco e chuvoso, assim como a duração de cada estágio também foi semelhante entre os períodos. As durações dos estágios de decomposição foram diferentes entre si, sendo que o estágio de fermentação foi o mais duradouro. As espécies adultas coletadas de L. eximia, C. idioidea e C. macellaria foram pioneiras na colonização dos cadáveres suínos e estiveram presentes em todos os estágios de decomposição, mas somente L. eximia apresentou associação com o estágio Inicial, segundo o índice de IndVal. Os imaturos de L. eximia foram os primeiros a abandonarem os cadáveres para empuparem no solo, seguidos pelos imaturos de C. macellaria, C. albiceps e C. rufifacies. Segundo o índice de IndVal, os adultos coletados das espécies H. townsendi e H. benoisti foram as únicas que apresentaram associação a apenas um estágio, o de Inchamento; C. rufifacies e C. megacephala apresentaram associação aos estágios de Putrefação Escura e Fermentação; e as demais espécies apresentaram associação a quatro estágios. Em relação aos adultos criados, L. eximia e C. macellaria foram as únicas que apresentaram associação ao estágio de Inchamento, enquanto que C. albiceps e C. rufifacies, as únicas que apresentaram associação ao estágio seco. Os valores de abundância das espécies adultas coletadas de L. eximia, C. idioidea, C. macellaria, C. albiceps e C. rufifacies diferiram entre os estágios de decomposição, sendo que, o de Putrefação Escura foi o mais atrativo. Os valores de abundância dos adultos criados de C. albiceps, C. rufifacies e L. eximia também diferiram entre os estágios, sendo que, o estágio seco foi onde ocorreu maior abundância das espécies de Chrysomya e o de Putrefação Escura, o de L. eximia. Os adultos coletados de L. eximia e C. idioidea, e os adultos criados de C. rufifacies foram mais abundantes no período chuvoso. Em relação aos adultos coletados, a análise de ordenação demonstrou que as comunidades de califorídeos apresentaram maior semelhança entre os estágios de Putrefação Escura, Fermentação e Seco, devido aos maiores valores de riqueza e abundância; no entanto, em relação aos adultos criados, as comunidades dos estágios de Fermentação e Seco foram as mais semelhantes. Estes resultados contribuem para o entendimento do processo de sucessão das espécies de califorídeos adultos visitantes e criados durante a decomposição de cadáveres suínos em uma área de cerrado do estado do Maranhão. / The objective of this study was to determine the fauna and the pattern in the temporal distribution of blow flies collected visting or reared from pig carcasses in a cerrado area at the Reserva Ecológica do Inhamum (REI), Caxias, MA. Two experiments were performed, one in the dry season (July and August of 2010) and the another in the rainy season (March and April of 2011). In each experiment three pig carcasses weighing 12 kg each were utilized. The carcasses were placed inside wire metal cages to prevent the access of large scavengers. A suspended trap was placed above each cage to capture adult blow flies that visited the pig carcass. Trays containing sawdust were placed under the cages in order to collect larvae leaving the carcass for pupation. A total of 51,234 specimens was collected. Of these, 25,093 adults were collected in the suspended traps and 26,141 adults were reared from the carcasses. The following species were identified: Chloroprocta idioidea (Robineau-Desvoidy, 1830) Chrysomya albiceps (Wiedemann, 1819), Chrysomya megacephala (Fabricius, 1794), Chrysomya rufifacies (Macquart, 1843), Cochliomyia macellaria (Fabricius, 1775), Hemilucilia benoisti Séguy, 1925, Hemilucilia segmentaria (Fabricius, 1805), Hemilucilia townsendi Shannon, 1926, Lucilia eximia (Wiedemann, 1818) and Lucilia sp1. Chrysomya rufifacies and H. townsendi are new records for Brazil. Cochliomyia macellaria and C. idioidea were the most abundant among the adults collected in traps, and C. albiceps and C. rufifacies were most abundant among reared specimens. The species of Hemilucilia were the only ones not reared from the carcasses. The mean time of decomposition of the pig carcasses was 10 days, and there was no difference between carcasses exposed in dry and rainy seasons. In adition, the duration of each decomposition stage did not vary between the two seasons. The duration of the stages was different, and the fermentation stage was the longest. Lucilia eximia, C. idioidea and C. macellaria, collected in the traps, were the pioneers in colonizing the pig carcasses, and they were found in all stages of decomposition. However, only L. eximia showed an association with the Initial stage, according to the IndVal index. The larvae of L. eximia were the first to leave the carcasses for pupation, followed by C. macellaria, C. albiceps and C. rufifacies. According to the IndVal index, the adults of H. townsendi and H. benoisti collected in the traps, were the only species that showed an association with only one stage, the Bloated stage. Chrysomya rufifacies and C. megacephala showed an association with the Black Putrefaction and Fermentation stages. The other species showed an association with four stages. With respect to species reared from carcasses, L. eximia and C. macellaria were the only ones that showed an association with the Bloat stage, and C. rufifacies and C. albiceps were the only species that had an association with the Dry Decay stage. The abundance values of L. eximia, C. idioidea, C. macellaria, C. albiceps, and C. rufifacies, collected in the traps, were different between the stages of decomposition, and the Black Putrefaction was the more attractive to these species. The abundance values of C. albiceps, C. rufifacies, and L. eximia, reared from the carcasses, were different between the stages, and the Dry Decay and Black Putrefaction stages showed the higher abundance of Chrysomya species and L. eximia, respectively. The species of L. eximia and C. idioidea, collected in the traps, and reared specimens of C. rufifacies were more abundant in the rainy season. With respect to the specimens collected in the traps, the ordination analyses showed that the community of blow flies has higher similarity between the Black Putrefaction, Fermentation and Dry Decay stages, due to higher richness and abundance values. However, with respect to the reared species, the community of the Fermentation and Dry Decay stages were the most similar. These results contribute to understanding the successional process of visitors adults and reared larvae of blow flies during the decomposition of pig carcasses in a cerrado area of the state of Maranhão.

Submitted by Edisangela Bastos (edisangela@ufpa.br) on 2013-09-17T16:45:03Z No. of bitstreams: 2 license_rdf: 22974 bytes, checksum: 99c771d9f0b9c46790009b9874d49253 (MD5) Dissertacao_FaunaCaliforideosSarcofagideos.pdf: 1460980 bytes, checksum: 73ce6d50b418d50b2f9c1d1ebf509e97 (MD5) / Approved for entry into archive by Ana Rosa Silva(arosa@ufpa.br) on 2013-09-30T14:00:38Z (GMT) No. of bitstreams: 2 license_rdf: 22974 bytes, checksum: 99c771d9f0b9c46790009b9874d49253 (MD5) Dissertacao_FaunaCaliforideosSarcofagideos.pdf: 1460980 bytes, checksum: 73ce6d50b418d50b2f9c1d1ebf509e97 (MD5) / Made available in DSpace on 2013-09-30T14:00:38Z (GMT). No. of bitstreams: 2 license_rdf: 22974 bytes, checksum: 99c771d9f0b9c46790009b9874d49253 (MD5) Dissertacao_FaunaCaliforideosSarcofagideos.pdf: 1460980 bytes, checksum: 73ce6d50b418d50b2f9c1d1ebf509e97 (MD5) Previous issue date: 2008 / Este trabalho foi realizado na base de extração petrolífera, bacia do rio Urucu, Coari, Amazonas, nos meses de abril, junho e outubro de 2007, em 16 áreas, sendo 12 de clareiras e quatro de matas, categorizadas em quatro ambientes (C1,C2,C3 e MT) conforme o tipo de cobertura vegetal. O objetivo do mesmo foi estudar a composição, abundância, riqueza e diversidade de Calliphoridae e Sarcophagidae (Insecta, Diptera) como também avaliar a possibilidade destes táxons serem utilizados como parâmetros para avaliação do estado de recuperação vegetal das áreas de clareiras. Foram coletados 7.215 califorídeos (três subfamílias, oito gêneros e 16 espécies), sendo que as espécies Chloroprocta idioidea (Robineau-Desvoidy,1830) (88,06%) e Paralucilia adespota Dear,1985 (4,35%) foram as mais abundantes. Os padrões de abundância de califorídeos não diferiram entre os ambientes, porém os ambientes foram distintos em relação a riqueza estimada e diversidade, formando dois grupos (C1-C2) e (C3-MT). A análise de ordenação (escalonamento multidimensional não-métrico) demonstrou que os ambientes diferiram entre si, como também uma maior semelhança entre C1-C2 e entre C3-MT, em relação à estrutura de comunidades de califorídeos. Na família Sarcophagidae foram coletados 3.547 espécimes, distribuídos em 10 gêneros, 6 subgêneros e 23 espécies, sendo que as espécies Sarcodexia lambens (Wiedemann,1830) (47,05%) e Peckia (Peckia) chrysostoma (Wiedemann,1830) (19,11%) foram as mais abundantes. Nesta família os padrões de abundância, riqueza estimada e diversidade diferiram entre os ambientes e separaram os mesmos em dois grupos, um de clareiras (C1,C2 e C3) e o outro de mata (MT). A análise de ordenação (escalonamento multidimensional não-métrico) demonstrou uma separação entre a fauna de sarcofagideos das clareiras e das matas. A cobertura de dossel influenciou nos padrões de abundância da espécie Eumesembrinella randa (Walker, 1849) e de riqueza estimada de califorídeos. Na família Sarcophagidae apenas a abundância da espécie Peckia (Pattonella) intermutans (Walker,1861) foi maior nos ambientes com maiores porcentagens de coberturas de dossel. A abundância das espécies Oxysarcodexia amorosa (Schiner,1868), O. fringidea (Curran & Walley,1934), O. thornax (Walker,1849), P. (P.) chrysostoma e S. lambens apresentaram uma relação linear negativa com a cobertura de dossel. Estes resultados indicam a possibilidade do uso destes padrões como parâmetros na avaliação de mudança na estrutura da vegetação. / This research was done at the oil extraction field of Urucu River in Coari, Amazonas, during the months of April, June and October of 2007, in 16 areas, 12 of them forest clearings and four forests, arranged in four environments (C1,C2,C3 and MT) according to type of forest cover. The objective was to study the composition, abundance, wealth, and diversity of Calliphoridae e Sarcophagidae (Insecta, Diptera) and also assess the possibility of these taxons to be used as parameters for evaluation of the condition of vegetal recuperation in clearing areas. The number of calliphorid collected were 7.215 (three subfamilies, eight genera and 16 species), being Chloroprocta idioidea (Robineau-Desvoidy,1830) (88,06%) and Paralucilia adespota Dear,1985 (4,35%) the most abundant species. The patterns of calliphorid abundance did not differ among the environments, however the e distinctive in relation to the estimated richness and diversity, forming two groups (C1-C2) and (C3-MT). The ordination analysis (non-metric multidimensional scaling) showed that the environment differed among themselves, as well as a greater similarity between C1-C2 and C3-MT, in relation to the structure of calliphorid communities. From the Sarcophagidae family 3.547 species were collected, distributed in 10 genera, six subgenera and 23 species , being Sarcodexia lambens (Wiedemann,1830) (47,05%) and Peckia (Peckia) chrysostoma (Wiedemann,1830) (19,11%), the most abundant species. The patterns of abundance, estimated richness and diversity for this family differed among environments and separated them into two groups, one from the clearings (C1,C2 and C3) and the other from the forest (MT). The ordination analysis (non-metric multidimensional scaling) showed a separation between sarcophagid fauna from clearings and those from the forests. The canopy cover influenced the pattern of abundance of Eumesembrinella randa Sarcophagidae family, only the abundance of Peckia (Pattonella) intermutans species (Walker,1861) was greater on environments with higher rates of forest canopy. The abundance of Oxysarcodexia amorosa (Schiner,1868), O. fringidea (Curran & Walley,1934), O. thornax (Walker,1849), P. (P.) chrysostoma and S. lambens species presented a negative linear relation with the forest canopy. These results indicate the possibility for use of these patterns as parameters to assess change in the vegetation structure.

<div>Chromosomal mechanisms of sex determination vary greatly in phylogenetically closely related species, indicative of rapid evolutionary rates. Sex chromosome karyotypes are generally conserved within families; however, many species have derived sex chromosome configurations. Insects display a plethora of sex chromosome systems due to rapid diversification caused by changes in evolutionary processes within and between species. A good example of such a system are insects in the blow fly family Calliphoridae. While cytogenetic studies observe that the karyotype in blow flies is highly conserved (five pairs of autosomal chromosomes and one pair sex chromosome), there is variation in sex determining mechanisms and sex chromosome structure within closely related species in blow flies. The evolutionary history of sex chromosomes in blow fly species have not been fully explored. Therefore, the objective of this research was to characterize the sex chromosome structures in four species of blow flies and investigate the selective forces which have played a role in shaping the diverse sex chromosome system observed in blow flies. The blow fly species used in this study are Phormia regina, Lucilia cuprina, Chrysomya rufifacies and Chrysomya albiceps. Phormia regina,and Lucilia cuprina have a heteromorphic sex chromosome system and are amphogenic (females produce both male and female offspring in equal ratio). In contrast, Chrysomya rufifacies and Chrysomya albiceps, have a homomorphic sex chromosome system, are monogenic (females produce unisexual progeny), have two types of females (arrhenogenic females – male producers and thelygenic females – female producers), and sex of the offspring is determined by the maternal genotype. </div><div>To accomplish these tasks, a total of nine male and female individual draft genomes for each of the four species (including three individual draft genomes of Chrysomya rufifacies – male, and the two females) were sequenced and assembled providing genomic data to explore sex chromosome evolution in blow flies. Whole genome analysis was utilized to characterize and identify putative sex chromosomal sequences of the four blow fly species. Genomic evidence confirmed the presence of genetically differentiated sex chromosomes in P. regina and L. cuprina; and genetically undifferentiated sex chromosomes in C. rufifacies and C. albiceps. Furthermore, comparative analysis of the ancestral Dipteran sex chromosome (Muller element F in Drosophila) was determined to be X-linked in P. regina and L. cuprina contributing to sex chromosome differentiation but not sex-linked in C. rufifacies and C. albiceps. Evolutionary pressures are often quantified by the ratio of substitution rates at non-synonymous (dN) and synonymous (dS) sites. Substitution rate ratio analysis (dN/dS) of homologous genes indicated a weaker purifying selection may have contributed to the loss of sex-linked genes in Muller element F genes of the undifferentiated sex chromosome as compared to the differentiated sex chromosome system. Overall, the results presented herein greatly expands our knowledge in sex chromosome evolution within blow flies and will reinforce the study of sex chromosome evolution in other species with diverse sex chromosome systems.</div><div><br></div>

Indiana University-Purdue University Indianapolis (IUPUI) / Phormia regina (Meigen), commonly known as the black blow fly is a dipteran that belongs to the family Calliphoridae. Calliphorids play an important role in various research fields including ecology, medical studies, veterinary and forensic sciences. P. regina, a non-model organism, is one of the most common forensically relevant insects in North America and is typically used to assist in estimating postmortem intervals (PMI). To better understand the roles P. regina plays in the numerous research fields, we re-constructed its genome using next generation sequencing technologies. The focus was on generating a reference genome through de novo assembly of high-throughput short read sequences. Following assembly, genetic markers were identified in the form of microsatellites and single nucleotide polymorphisms (SNPs) to aid in future population genetic surveys of P. regina. A total 530 million 100 bp paired-end reads were obtained from five pooled male and female P. regina flies using the Illumina HiSeq2000 sequencing platform. A 524 Mbp draft genome was assembled using both sexes with 11,037 predicted genes. The draft reference genome assembled from this study provides an important resource for investigating the genetic diversity that exists between and among blow fly species; and empowers the understanding of their genetic basis in terms of adaptations, population structure and evolution. The genomic tools will facilitate the analysis of genome-wide studies using modern genomic techniques to boost a refined understanding of the evolutionary processes underlying genomic evolution between blow flies and other insect species.