<p> Mass spectrometry (MS) has become one of the most powerful and versatile tools for chemical analysis due to its ultra-high sensitivity, high throughput, ease of automation, and the large amount of information obtained. Nowadays, MS is extensively used in many tasks, such as identification and quantitation of drug metabolites, analysis of the products of biomass pyrolysis, and study of reactive intermediates, to name a few. However, these mass spectrometric analyses are not without challenges. For example, the requirement for quantifying trace amounts of substances in a complex mixture constantly pushes the detection limit of mass spectrometers, and the increased sample complexity demands higher and higher mass resolution. Therefore, MS is constantly evolving to address more difficult analytical challenges. A variety of MS techniques have been developed over the years, including soft ionization methods that facilitate mass spectrometric analysis of macromolecules, such as proteins and antibodies that enables the development of new therapeutic agents, benchtop high-resolution mass spectrometers, such as the orbitraps that can be used to analyze some of the most complex mixtures, and portable mass spectrometers which can be used in the home and garden and even in cancer surgery. Besides its applications in chemical analysis, MS can serve as a unique tool for the fundamental study of gas-phase ion/molecule reactions, these gas-phase reactions can be used to better understand the reactivities of many reactive intermediates and to obtain structural information for unknown analytes.</p><p></p><p> This thesis is aimed at addressing challenges involved in mass spectrometric analyses of isomeric drug metabolites (Chapter 4), quantitation of drug metabolites by using tandem mass spectrometry coupled with liquid chromatography (LC-MS/MS) (Chapter 5), delineating cellulose depolymerization mechanisms upon fast pyrolysis by using pyrolysis-tandem mass spectrometry (py-MS/MS) (Chapter 6), and studying the reactivities of vinyl cation intermediates (Chapter 7). An overview of the dissertation research is given in Chapter 1, the instrumentation and principles of linear quadrupole ion trap (LQIT) mass spectrometer are discussed in Chapter 2, and the organic synthesis performed for several studies is detailed in Chapter 3.</p>

Weltweit versuchen Wissenschaftler, künstliche Viren für den Gentransfer zu konstruieren, die nicht reproduktionsfähig sind. Diese sollen die Vorteile der natürlichen Viren besitzen (effizienter Transport von genetischem Material), jedoch keine Antigene auf ihrer Oberfläche tragen, die Immunreaktionen auslösen. <br><br> Ziel dieses Projektes ist es, einen künstlichen Viruspartikel herzustellen, dessen Basis eine Polyelektrolytenhohlkugel bildet, die mit einer Lipiddoppelschicht bedeckt ist. Um intakte Doppelschichten zu erzeugen, muss die Wechselwirkung zwischen Lipid und Polyelektrolyt (z.B. DNA) verstanden und optimiert werden. Dazu ist es notwendig, die strukturelle Grundlage der Interaktion aufzuklären. Positiv geladene Lipide gehen zwar starke Wechselwirkungen mit der negativ geladenen DNA ein, sie wirken jedoch toxisch auf biologische Zellen. In der vorliegenden Arbeit wurde daher die durch zweiwertige Kationen vermittelte Kopplung von genomischer oder Plasmid-DNA an zwitterionische oder negativ geladene Phospholipide an zwei Modellsystemen untersucht. <br><br> 1. Modellsystem: Lipidmonoschicht an der Wasser/Luft-Grenzfläche <br> Methoden:<br> Filmwaagentechnik in Kombination mit IR-Spektroskopie (IRRAS), Röntgenreflexion (XR), Röntgendiffraktion (GIXD), Brewsterwinkel-Mikroskopie (BAM), Röntgenfluoreszenz (XRF) und Oberflächenpotentialmessungen <br> Resultate:<br> A) Die Anwesenheit der zweiwertigen Kationen Ba2+, Mg2+, Ca2+ oder Mn2+ in der Subphase hat keinen nachweisbaren Einfluss auf die Struktur der zwitterionischen DMPE- (1,2-Dimyristoyl-phosphatidyl-ethanolamin) Monoschicht. <br> B) In der Subphase gelöste DNA adsorbiert nur in Gegenwart dieser Kationen an der DMPE-Monoschicht. <br> C) Sowohl die Adsorption genomischer Kalbsthymus-DNA als auch der Plasmid-DNA pGL3 bewirkt eine Reduktion des Neigungswinkels der Alkylketten, die auf einen veränderten Platzbedarf der Kopfgruppe zurückzuführen ist. Durch die Umorientierung der Kopfgruppe wird die elektrostatische Wechselwirkung zwischen den positiv geladenen Stickstoffatomen der Lipidkopfgruppen und den negativ geladenen DNA-Phosphaten erhöht.<br> D) Die adsorbierte DNA weist eine geordnete Struktur auf, wenn sie durch Barium-, Magnesium-, Calcium- oder Manganionen komplexiert ist. Der Abstand zwischen parallelen DNA-Strängen hängt dabei von der Größe der DNA-Fragmente sowie von der Art des Kations ab. Die größten Abstände ergeben sich mit Bariumionen, gefolgt von Magnesium- und Calciumionen. Die kleinsten DNA-Abstände werden durch Komplexierung mit Manganionen erhalten. Diese Ionenreihenfolge stellt sich sowohl für genomische DNA als auch für Plasmid-DNA ein. <br> E) Die DNA-Abstände werden durch die Kompression des Lipidfilms nicht beeinflusst. Zwischen der Lipidmonoschicht und der adsorbierten DNA besteht demnach nur eine schwache Wechselwirkung. Offensichtlich befindet sich die durch zweiwertige Kationen komplexierte DNA als weitgehend eigenständige Schicht unter dem Lipidfilm. <br> <br><br> 2. Modellsystem: Lipiddoppelschicht an der fest/flüssig-Grenzfläche<br> Methoden:<br> Neutronenreflexion (NR) und Quarzmikrowaage (QCM-D)<br> Resultate:<br> A) Das zwitterionische Phospholipid DMPC (1,2-Dimyristoyl-phosphatidylcholin) bildet keine Lipiddoppelschicht auf planaren Polyelektrolytmultischichten aus, deren letzte Lage das positiv geladene PAH (Polyallylamin) ist. <br> B) Hingegen bildet DMPC auf dem negativ geladenen PSS (Polystyrolsulfonat) eine Doppelschicht aus, die jedoch Defekte aufweist. <br> C) Eine Adsorption von genomischer Kalbsthymus-DNA auf dieser Lipidschicht findet nur in Gegenwart von Calciumionen statt. Andere zweiwertige Kationen wurden nicht untersucht.<br> D) Das negativ geladene Phospholipid DLPA (1,2-Dilauryl-phosphatidsäure) bildet auf dem positiv geladenen PAH eine Lipiddoppelschicht aus, die Defekte aufweist. <br> E) DNA adsorbiert ebenfalls erst in Anwesenheit von Calciumionen in der Lösung an die DLPA-Schicht.<br> F) Durch die Zugabe von EDTA (Ethylendiamintetraessigsäure) werden die Calciumionen dem DLPA/DNA-Komplex entzogen, wodurch dieser dissoziiert. Demnach ist die calciuminduzierte Bildung dieser Komplexe reversibel. / All over the world scientists are trying to engineer artificial viruses, which do not replicate, for gene delivery. These artificial viruses should have the advantages of natural viruses such as efficient transport of genetic material, but they should not carry antigens, which cause immune reactions, on their top portion.<br><br> The aim of this project is to develop an artificial virus particle that is based on a polyelectrolyte hollow capsule which is covered by a lipid bilayer. To create intact bilayers, it is crucial to understand and optimize the interaction between lipids and polyelectrolytes (e. g. DNA). Therefore the structural basis of that interaction must be elucidated. Positively charged lipids interact strongly with the negatively charged DNA but they cause toxic reactions in biological cells. Hence the present work used two model systems to study the coupling of genomic or plasmid DNA to zwitterionic or negatively charged phospholipids induced by divalent cations. <br><br> 1. Model system: Lipid monolayer at the air/water-interface <br> Methods: <br> Langmuir filmbalance in combination with IR-spectroscopy (IRRAS), X-ray reflectometry (XR), X-ray diffraction (GIXD), Brewster angle microscopy (BAM), X-ray fluorescence (XRF), and surface potential measurements<br> Results:<br> A) The presence of the divalent cations Ba2+, Mg2+, Ca2+ or Mn2+ in the subphase has no traceable influence on the structure of a zwitterionic DMPE (1,2-dimyristoyl-phosphatidyl-ethanolamine) monolayer.<br> B) DNA which is dissolved in the subphase adsorbs to the DMPE-monolayer only if divalent cations are present.<br> C) The adsorption of genomic calf thymus DNA as well as of the plasmid DNA pGL3 causes a reduction of the tilt angle of the lipid alkyl chains. The tilt reduction can be ascribed to a change in the space required by the lipid head group. This change in head group orientation increases the electrostatic interaction between the positively charged nitrogen atoms in the lipid head and the negatively charged DNA phosphates.<br> D) The adsorbed DNA exhibits an ordered structure if it is complexed by barium, magnesium, calcium or manganese ions. The spacing between parallel DNA strands depends on the size of the DNA fragments as well as on the kind of cation. The largest DNA-spacings are observed with barium ions, followed by magnesium and calcium ions. DNA-complexation with manganese ions causes the smallest spacings. This order of ions is observed for both genomic and plasmid DNA.<br> E) Compression of the monolayer does not influence the DNA spacings. Thus the interaction between the lipid monolayer and adsorbed DNA is only weak. The DNA must exist as a more or less separate layer under the lipid film.<br> <br><br> 2. Model system: Lipid bilayer at the solid/fluid-interface<br> Methods: <br> Neutron reflectometry (NR), and Quartz crystal microbalance (QCM-D)<br> Results:<br> A) The zwitterionic phospholipid DMPC (1,2-dimyristoyl phosphatidylcholine) does not form lipid bilayers on top of planar polyelectrolyte multilayers covered with the positively charged PAH (polyallylamine).<br> B) In contrast, DMPC forms a lipid bilayer with defects on top of the negatively charged PSS (polystyrolsulfonate) terminated polyelectrolyte cushion.<br> C) Genomic calf thymus DNA adsorbs only to the DMPC layer in presence of calcium ions. Different ions were not examined.<br> D) The negatively charged phospholipid DLPA (1,2-dilauryl-phosphatidic acid) also forms a lipid bilayer with defects on top of the PAH-terminated cushion.<br> E) The DNA adsorbs also to the DLPA layer only in the presence of calcium ions in the solution.<br> F) By addition of EDTA (ethylenediaminetretraacetic acid) the calcium cations are removed from the DLPA/DNA-complex and the complex dissociates. Thus the calcium induced formation of that complex is reversible.<br><br>

No description available.

Macrocyclic ligand-complexed transition metal-oxo intermediates are the active oxidizing species in a variety of important biological and catalytic oxidation reactions. Many transition metal catalysts have been designed to mimic the predominant oxidation catalysts in nature, namely the cytochrome P450 enzymes. Iron porphyrin complexes have been the center of research as catalysts. In this study 5,10,15,20- tetramesitylporphyrin (H2TMP) and its corresponding iron complexes FeIII(X)TMP (X= Cl, ClO4, ClO3, NO3, NO2, and BrO3) have been successfully synthesized and fully characterized by UV-vis and NMR spectroscopies. For the catalytic selective oxidation of organic sulfides, the potential of iron(III) porphyrin complexes with iodobenzene diacetate [PhI(OAc)2] have been investigated. Iodobenzene diacetate was found to be an efficient oxygen source in the iron(III) porphyrin-catalyzed oxidation of sulfides to sulfoxides. Iron(III) porphyrin catalysts show an excellent conversion and selectivity for the sulfoxidation reactions. Reaction conditions and environments that effect the catalytic sulfoxidation including solvent, catalytic amount, axial ligand, water, and thioanisole substrates, have been investigated to identify the optimal conditions and the substrate scope. Under optimized conditions, excellent substrate conversions (up to 100%) as well as product selectivies (sulfoxide:sulfone > 95:5) have been achieved. To probe the nature of the oxidizing species in above catalytic sulfoxidations, iron(IV)-oxo porphyrin radical cations model of Compound I were chemically produced from the corresponding iron(III) tetramesitylporphyrin precursors with excess amounts of PhI(OAc)2 (20-50 equivalents) in CH3CN solvent. All O=FeIV(X)TMP·+ (X= Cl, ClO4, ClO3, and NO3) show weaker Soret band and broader Q band that are characteristic of Compound I analogues. A new photochemical method that led to generation of the iron(IV)-oxo porphyrin radical cations was also successfully developed. Iron(IV)-oxo porphyrin radical cations were generated by irradiation of iron(III) porphyrin chlorate or bromate complexes that result in heterolytic cleavage of the O-X bond in the axial ligand.

Synthesis and Characterization of Some Low and Negative Thermal Expansion Materials Tamas Varga 370 pages Directed by Dr. Angus P. Wilkinson The high-pressure behavior of several negative thermal expansion materials was studied by different methods. In-situ high-pressure x-ray and neutron diffraction studies on several compounds of the orthorhombic Sc2W3O12 structure revealed an unusual bulk modulus collapse at the orthorhombic to monoclinic phase transition. In some members of the A2M3O12 family, a second phase transition and/or pressure-induced amorphization were also seen at higher pressure. The mechanism for volume contraction on compression is different from that on heating. A combined in-situ high pressure x-ray diffraction and absorption spectroscopic study has been carried out for the first time. The pressure-induced amorphization in cubic ZrW2O8 and ZrMo2O8 was studied by following the changes in the local coordination environments of the metals. A significant change in the average tungsten coordination was found in ZrW2O8, and a less pronounced change in the molybdenum coordination in ZrMo2O8 on amorphization. A kinetically frustrated phase transition to a high-pressure crystalline phase or a kinetically hindered decomposition, are likely driving forces of the amorphization. A complementary ex-situ study confirmed the greater distortion of the framework tetrahedra in ZrW2O8, and revealed a similar distortion of the octahedra in both compounds. The possibility of stabilizing the low thermal expansion high-temperature structure in AM2O7 compounds to lower temperatures through stuffing of ZrP2O7 was explored. Although the phase transition temperature was suppressed in MIxZr1-xMIIIxP2O7 compositions, the chemical modification employed was not successful in stabilizing the high-temperature structure to around room temperature. An attempt has been made to control the thermal expansion properties in materials of the (MIII0.5MV0.5)P2O7-type through the choice of the metal cations and through manipulating the ordering of the cations by different heat treatment conditions. Although controlled heat treatment resulted in only short-range cation ordering, the choice of the MIII cation had a marked effect on the thermal expansion behavior of the materials. Different grades of fluorinert were examined as pressure-transmitting media for high-pressure diffraction studies. All of the fluorinerts studied became nonhydrostatic at relatively low pressures (~1 GPa).

Organic materials are ubiquitous in the geologic environment, and can exert significant influence over the interfacial properties of minerals. However, due to the complexity in their structure and interaction with soil solids, their impact has remained relatively unquantified. This study investigated the engineering behaviors of organoclays, which were synthesized in the laboratory using naturally occurring clay minerals and quaternary ammonium compounds of controlled structure and density of loading. Organic cations were chosen to study the effects of functional group structure and size. The laboratory investigation showed that the presence of the organic cations on the mineral surfaces led to increased hydrophobicity of all clays tested. Conduction studies on the electrical, hydraulic, and thermal properties of the organoclay composites suggested that increasing the total organic carbon content resulted in decreased electrical and thermal conductivity, but increased hydraulic conductivity, due to the reduced swelling of the base clay mineral phase. Electrokinetic properties of the organoclays illustrated that compared with the clay's naturally occurring inorganic cations, exchanged quaternary ammonium cations were more likely bound within a particle's shear plane. Consequently, organoclays had less negative zeta potential than that of unmodified bentonite. Increasing the length of one carbon tail was more effective at binding organic cations within the shear plane than increasing the size of the cation, when compared on the basis of total organic carbon content. In terms of large strain strength, the modified organic clays exhibited increased shear strength, in part owing to the reduction in water content caused by the presence of the hydrophobic organic layering. Shear strength increased with single carbon tail length or with cation size, although the latter effect tended to reach a plateau as the length of the four short cation tails increased from 2 to 4. In terms of small strain behavior, the shear modulus was shown to be a function of the total organic carbon content. It is believed that number of particle contacts increased as the organic carbon content increased. Stiffness increased as either the size of the cation or the total organic carbon content was increased. Damping also increased as the organic loading was increased, with the organic phase acting as an energy dissipation mechanism.

No description available.

The development of the interrupted Nazarov cyclization of allenyl vinyl ketones is presented. The intermediate oxyallyl cation, derived from an allenyl vinyl ketone, may be trapped efficiently by a divergent array of nucleophilic species generating functionalized cyclopent-2-enone products. Allenyl vinyl ketones are also a versatile source of cyclic molecules via a tandem reaction sequence terminated via reaction with acyclic dienes, cyclic dienes, aza-heterocycles, electron-rich alkenes, or styrenes by the formation of an additional ring by a [4 + 3] and/or [3 + 2] cyclization or by the formation of one additional carbon-carbon bond. The bicyclic compounds generated by these processes are densely substituted, and would be difficult to access as succinctly in other ways. The products of these interrupted Nazarov reactions generally reflect excellent regio- and stereoselectivity in the trapping reaction. In some instances, equilibrating conditions were shown to enhance the proportion of one product at the expense of another or to provide a different carbon skeleton. This process appears fairly general, and can be conducted with unsubstituted or alkyl, aromatic, or heteroaromatic allenyl vinyl ketones. The exceptional affinity of allenyl vinyl ketones to undergo interrupted Nazarov reactions is likely a result of the increased longevity of the intermediate oxyallyl cation, due in part to the increased resonance stabilization provided by the allene unit. The high regioselectivity noted in the trapping process was computationally and experimentally confirmed to be a result of a localization of the positive charge in the intermediate oxyallyl cation. The application of this recently developed methodology towards the synthesis of the natural product (+)-roseadione is also described. The tandem Nazarov/[4 + 3] cascade of allenyl vinyl ketones provides a unique manner in which to access the tricyclic core of this cyclooctanoid natural product, a molecule which, to date, has never been synthesized.

Thesis (Ph.D.) -- McMaster University, 1999. / Includes bibliographical references (leaves 149-161). Also available via World Wide Web.

Diss. (sammanfattning) Umeå : Sveriges lantbruksuniv. / Härtill 4 uppsatser.