As an organism develops, multiple cellular processes need to occur in order to specify and organize tissue. One essential process is the establishment of cell polarity, which drives cell fate specification and stem cell differentiation. Another key process is programmed cell death, which is important for tissue remodeling and clearing damaged or diseased cells from the body. A loss in cell polarity can lead to defects in tissue organization and carcinogenesis. Defects in programmed cell death can lead to autoimmune diseases and cancer. However, hyperactive programmed cell death can lead to neurodegeneration. The Drosophila ovary, which is composed of germline and somatic cells, is an excellent model to study both cell polarity and cell death. In the germ cells, oocyte fate is specified and maintained through the asymmetric localization of cell cycle and cell polarity RNAs, proteins, and organelles, such as mitochondria, to and within the oocyte. Additionally the somatic follicle cells, which surround the germ cells, require a specific apical-basal polarity to function. During oogenesis, programmed cell death can be induced within the ovary to prevent oogenesis from maturing under low nutrient, high stress or crowded conditions. When this occurs, the germline is cleared from the ovary by a process known as engulfment. Somatic follicle cells surrounding the germline synchronously enlarge and engulf the corpses of the dying germline cells. It is unknown what triggers the enlargement of the follicle cells. Previous research has shown that the apical side of a follicle cell is heavily marked by cell polarity proteins, to specify the apical side away from the lateral and basal sides. Since many important genes regulating both cell polarity and engulfment are conserved between Drosophila and other eukaryotes, we can study the establishment and maintenance of cell polarity and its role during engulfment to obtain a better understanding of these processes in mammals and their relevance to diseases. This dissertation investigates the role of cell polarity in both the specification of oocyte cell fate, and the organization and enlargement of the follicle cells during engulfment in the ovary. / 2016-11-03T00:00:00Z

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第20213号 / 理博第4298号 / 新制||理||1617(附属図書館) / 京都大学大学院理学研究科生物科学専攻 / (主査)講師 嶋田 知生, 教授 長谷 あきら, 教授 鹿内 利治 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DFAM

Formation of a tubular organ, such as the heart, requires cells to integrate positional and polarity signals in order to enclose a fluid or gas transporting lumen. Developing tubes must establish a site for lumen initiation, demarcate membrane domains, and modulate cell polarization and morphology. The Drosophila melanogaster embryonic heart is a mesodermal tube model displaying a unique polarity, reminiscent of vertebrate vasculature. We have characterized a role for the transmembrane adhesion receptor αPS3βPS1 integrin and its cytoplasmic adaptor Talin in heart tubulogenesis. βPS1 and Talin are early indicators of the luminal site and Talin-mediated integrin function is essential for cardioblast polarization and morphology prior to and during lumen development. Careful analysis of hearts in embryos homozygous for a null allele of rhea, the gene encoding Talin, reveals that Talin is required to correctly orient the heart cell polarity such that a continuous central open lumen is enclosed. Without proper integrin or Talin function, the luminal determinants Slit and its receptor Robo are not stabilized within the heart, a central lumen fails to form, and the midline is instead marked by continuous adhesion. Furthermore, although Talin is essential for proper βPS1 integrin localization within the heart, either of Talin’s two integrin binding sites are sufficient to stabilize βPS1 along the luminal domain and establish an open cardiac tube. Taken together, our findings reveal an instructive role for integrins and Talin in communicating polarization cues central to heart tubulogenesis. / Thesis / Doctor of Philosophy (PhD)

The retinal pigment epithelium (RPE) is a transporting epithelium with polarized membrane domains. A unique characteristic of these cells is that their apical surface does not face a lumenal space, but is directly apposed to a layer of neurons (photoreceptors) and their associated extracellular matrix. Because the interaction occurring at this site is important for retinal attachment and particle phagocytosis, an attempt was made to identify epithelial molecules which potentially could mediate cell-cell or cell-matrix adhesion. In the present report, the subcellular localization of β1-integrins, the main receptors for extracellular matrix ligands, has been examined within Xenopus RPE. Several previously characterized antibodies were used in this analysis including: two rabbit polyclonal antibodies directed against purified chick muscle fibronectin receptor (pAbs No. 3818 and No. 2999), and a monoclonal antibody specific for Xenopus β1-integrin subunit (mAb 8C8). In Western blots of whole epithelial cell extracts, each of the antibodies intensely labeled a 115 kDa band, consistent with β1-integrin reactivity. One of the reagents (pAb No. 3818) also weakly stained unidentified bands of 50 and 100 kDa. Pre-clearing experiments demonstrated that pAb No. 3818 and mAb 8C8 both recognize the same detergent-soluble integrin: when cell extracts were depleted of β1-integrin by immunoprecipitation with mAb 8C8, the 115 kDa antigen recognized by pAb No. 3818 was not observed. Consistent with their similar immunochemical reactivities, each of the antibodies produced equivalent immunocytochemical staining of many eyecup tissues, including extraocular skeletal muscle cells, scleral and choroidal fibroblasts and vascular endothelium of the choroid and neural retina. In the native RPE, and isolated sheets of epithelium, however, qualitative differences in labeling between these antibodies were evident. Analysis by confocal microscopy showed that, while all three antibodies stained the basal surface of the epithelium, pAb No. 3818 also strongly labeled the apical microvillar surface. As the adjacent photoreceptors did not cross-react with this antibody in control experiments, the apical RPE staining could not be accounted for as contamination with retinal tissues during isolation. Furthermore, when the apical cell surface was selectively biotinylated in situ, and biotinylated proteins precipitated by streptavidin-agarose, β1-integrin was detected by immunoblotting with both mAb 8C8 and pAb No. 3818. This domain-specific material, however, represented only a fraction of the whole cell surface integrin: substantially greater amounts of tagged molecules could be detected when isolated epithelial sheets were biotinylated, most likely representing the basal protein. Based on these results, it can be concluded that β1-integrin is present in both basal and apical RPE plasma membranes. Molecules present in the apical, membrane may represent components of adhesion receptors responsible for retina-epithelium interactions.

Establishment and maintenacne of a polarized axis is essential for all organisms. Cells can either change their shape in response to extracellular cues or maintain a stable polarity axis via landmarks defined in relation to internal cues. In the fission yeast Schizosaccharomyces pombe,microtubules regulate cortical cell polarity together with the landmark protein Tea1. Tea1 is transported to cell tips on microtubule plus-­‐ends and deposited upon microtubule contact with the membrane. Although Tea1 has been shown to interact with several binding-­partners, Tea1 anchoring at the cell tip depends mostly on the membrane-­associated protein, Mod5. Tea1 and Mod5 accumulate in clusters at the cell tip in a mutually dependent manner. I used a combination of live-­‐cell imaging, FRAP (Fluorescence Recovery After Photobleaching) and computational modeling to dissect the dynamics of the Tea1-­‐Mod5 interaction. I have shown that although Tea1 is stably associated with the cell tip, Mod5 is mobile within the cell tip. I proposed a model in which Tea1 is stable at the cell tip due to self-­‐polymerization and association in the form of a cluster-­‐network. In the model, the role of Mod5 in the cluster-­‐network is to facilitate the formation of Tea1-­‐Tea1 interactions. Moreover, in the model, Mod5 is restricted to the cell tip due to iterative binding to and release from the Tea1 cluster-­‐network. The properties of the proposed Tea1 cluster-­‐ network might contribute to the behavior of Tea1 as a polarity landmark. I hypothesized that Tea1 transfer from the microtubules to the cell tip was regulated by phosphorylation. Tea1 phosphorylated residues were mapped using mass spectroscopy (MS), and identified to be mostly enriched within a central region of the protein. Using a combination of mutagenic analysis and live-­‐cell imaging I demonstrate that Tea1 phosphorylation might be required for its dissociation from the cluster-­‐network at the cell tip. This suggests that Tea1 interactions within the cluster network are phospho-­‐regulated by one of the several tip-­‐localized kinases. It has been shown in other organisms and in this thesis that comparison among MS samples requires quantitative MS methodologies. Thus, I developed a robust SILAC (Stable Isotope Labeling in Cell Culture) method to perform quantitative MS in S. pombe. As a proof-­‐of-­‐principle of the method I performed a proteome-­‐wide comparison between the late G2 and the G1/S transition of the cell cycle. The cell cycle proteome-­‐wide analysis not only quantified variation in expression levels of cell cycle regulated proteins but also identified novel cell cycle regulated proteins. It has been previously shown that Tea1, Tea3 and Mod5 can interact simultaneously, with each pair interacting independently of the third protein. I describe here a Mod5 mutagenic analysis screen designed to separate Tea1 and Tea3 binding site on Mod5. The Mod5-­‐mutants obtained from this analysis indicate that the Tea3-­‐Mod5 interaction may play a role in cell polarity establishment. Moreover, although Tea3 is non-­‐essential for the cluster-­‐network formation, Tea3 might be important for its compaction, which may be particularly important during de novo formation of cell polarity.

Les éponges (Porifera) sont l'une des premières lignées d'animaux à avoir émergé. De ce fait, elles sont considérées comme des espèces clés pour retracer l’origine et l'évolution des gènes et des voies de signalisation qui ont sous-tendu l'apparition de la pluricellularité chez les métazoaires. Entre autres, les voies Wnt ont été décrites comme des cascades génétiques essentielles du control de nombreux mécanismes cellulaires (prolifération, communication, adhésion, motilité, etc.) au cours du développement précoce des bilatériens et des cnidaires. C’est pourquoi, l'étude de ces voies, chez les lignées d’émergences plus anciennes sont essentielles afin de comprendre l'origine des plans d’organisation des animaux.J’ai alors entrepris de nombreuses analyses bioinformatiques sur différentes bases de données d’éponges. Il apparait alors que l’ancêtre commun des éponges possédait déjà certainement tous les composants des voies Wnt. Néanmoins, à ce jour, puisque l’intégralité de ces composants n’a été identifiée que dans le genre Oscarella (lignée des Homoscleromorpha), différentes pertes secondaires sembleraient s’être produites chez les démosponges, les éponges calcaires et les hexactinellides. Afin de tester si ces gènes orthologues sont impliqués dans la mise en place du plan d’organisation des éponges, des études fonctionnelles ont été mises en œuvre. Ces approches fonctionnelles réalisées sur deux lignées d’éponges différentes tendent alors à confirmer la conservation des voies de signalisation Wnt dans les processus de mise en place des plans d’organisation des animaux, à la fois au cours de l'embryogenèse mais aussi lors du renouvellement cellulaire chez l'adulte. / Sponges (Porifera) are one of the earliest emerged animal lineages. They are thus considered as key species to retrace early evolution of genes and pathways underlying the emergence of multicellularity in metazoans. Among others, the Wnt pathways have been described as crucial modules controlling cell proliferation, cell communication, cell adhesion and cell motility during the early development of Bilaterians and Cnidarians. Therefore the study of these signaling pathways in more basally branching lineages is essential for unraveling the origin of animal body plans. I performed numerous bioinformatic analyses on different poriferan databases. One of my main results is that the last common ancestor of Porifera probably already possessed all the components of the Wnt pathways. Nevertheless, because, to date, all these components were only retrieved in the Oscarella genus (Homoscleromorpha lineage), several secondary gene losses would have occurred in other sponge lineages, namely Demospongia, Calcarea and Hexactinellida.In order to test whether or not these retrieved orthologous genes, are involved in patterning sponge body plan (as they do in Bilateria and Cnidaria), functional studies were implemented. These functional studies performed on two different lineages tend to confirm that Wnt signaling pathways were conserved from sponges to vertebrates to pattern animal body plan during both embryogenesis and cell renewal in adult.

La polarité planaire ou PCP est un processus dans lequel les cellules et des structures apicales sedéveloppent et s’orientent dans le plan de l’épithélium. Cette polarité est régulée par un ensemble deprotéines incluant Vangl2. Un mutant murin de Vangl2 nommé looptail présente une forme sévèred’absence de fermeture du tube neural. Des pertes de fonctions de Vangl2 sont également retrouvées chezdes enfants atteints de défaut de fermeture du tube neural. Vangl2 possède un motif d’interaction pour desdomaines PDZ et s’organise en protéine à quatre domaines transmembranaires. Malgré de nombreusesdonnées génétiques disponibles concernant la perte de fonction de Vangl2, beaucoup reste à faire pourélucider les mécanismes moléculaires impliqués. Le locus du gène vangl2 humain est localisé dans unerégion fréquemment réarrangée dans différents cancers incluant les cancers du sein. Nous nous sommesintéressés à l’expression de Vangl2 dans les cancers du sein. Nous montrons que Vangl2 est surexprimédans des cancers du sein de sous-type basal (cancers du sein agressifs et de mauvais pronostic) danslesquels le locus génétique de Vangl2 est significativement amplifié et où le niveau d’expression del’ARNm et de la protéine est également élevé. De plus, par des études in vitro et in vivo, nous démontronsle rôle de Vangl2 dans la croissance tumorale et dans les processus de migration cellulaire. Ces effets sontdépendants de son motif d’interaction aux domaines PDZ et sont dépendants de Scrib, une autre protéinede la PCP, étudiée dans l’équipe et impliquée dans les processus de migration cellulaire. Par desexpériences de gain et de perte de fonction dans des cellules de cancers du sein, nous démontrons quel’expression de Vangl2 régule la signalisation JNK via l’activité des GTPases Rac1 et Cdc42 importantespour les processus de réorganisation du cytosquelette d’actine. L’ensemble de nos données indique un rôlerégulateur de Vangl2 dans les processus de tumorigenèse l’impliquant dans la croissance tumorale, laprolifération et migration cellulaires. / Planar cell polarity (PCP) is a process by which cells and apical structures grow in a uniformorientation within the plane of the epithelium. This type of polarity is regulated by a set of “core” proteinsincluding Vangl2. A vangl2 mutant, known as looptail exhibits a severe form of neural tube defect.Mutations of vangl2 associated to neural tube defects were also described in human. Vangl2 possesses aPDZ binding motif and is potentially organized in a four transmembrane domain structure. While geneticdata has very well described the importance of Vangl2 in embryonic development, its molecular functionsare still unknown. The human vangl2 gene is localized in a region with frequent rearrangements involvedin multiple cancers, including breast cancer. We decided to explore the expression of Vangl2 in breastcancer and defined Vangl2 as a PCP “core” protein associated with a signature of poor prognosis basaltypebreast cancer. The Vangl2 genetic locus is amplified in breast cancers, and this amplificationcorrelates with high mRNA and protein levels. Moreover, in in vitro and in vivo studies, we demonstratethe role of Vangl2 in tumor growth and cell migration. These functions are dependent on its PDZ bindingmotif and implicates Scrib, a PCP protein containing PDZ domains and involved in cell migration. Finally,using gain-of-function and loss-of-function approaches in breast cancer cell lines, we demonstrate thatVangl2 modulates the JNK pathway activation via the Rac1 and Cdc42 GTPases which are important forcytoskeleton reorganization. Together, our data reveal that Vangl2 has a role in tumor growth, cellproliferation and cell migration.

The development of organs such as the lung and kidney occurs by branching morphogenesis. Changes in the cytoskeletal architecture, cell-cell adhesion and cell polarity are necessary for the formation of new branches. Interactions and reciprocal signalling between epithelial and mesenchymal cells mediate these organised cell movements that give rise to a complex system of tubes suitable for the transport of gas or fluids. Mutations that disrupt formation of either the correct number, or shape of epithelial branches, affect lung function. This, in turn, can lead to congenital abnormalities such as cystadenomatoid malformations, pulmonary hypertension or lung hypoplasia. Defects in lung architecture are also associated with adult lung disease, particularly in cases of idiopathic lung fibrosis. Identifying the signaling pathways that drive epithelial tube formation will likely shed light on both congenital and adult lung disease. This study shows that mutations in the planar cell polarity (PCP) genes: Celsr1; Vangl2 and Scribble, lead to disrupted lung development and defects in lung architecture. Examination of Vangl2 mutant kidneys reveals similar impairment of branching morphogenesis. Detailed histological and immunocytochemical analysis reveals that lungs from Celsr1Crsh/Crsh, Vangl2Lp/Lp and ScribbleCrc/Crc mice are small and misshapen with fewer branches, and by late gestation exhibit thickened interstitial mesenchyme and defective saccular formation. Moreover, epithelial integrity is disrupted, cytoskeletal remodeling perturbed and mutant endoderm does not branch normally in response to the chemoattractant FGF10. In ex-vivo culture, inhibition of Rho kinase, an important downstream effector of the PCP signaling pathway, can mimic the branching defects observed in these three mouse mutants. Furthermore, all three proteins are present in restricted spatial domains within lung epithelium. ScribbleCrc/Crc lungs, the most severely affected line, exhibit additional defects in components of the tight and adherens junctions; this in turn affects lumen diameter. These findings show that components of the PCP pathway: Celsr1; Vangl2 and Scribble are required for normal foetal lung development, thereby revealing a novel signalling pathway critical for this process. Examination of postnatal mice was not possible as homozygous mutations result in embryonic lethality. However, an assessment of Vangl2Lp/+ mice reveals that loss of a single copy of Vangl2 is enough to cause defects in embryonic lung development that persist into adult life, affecting lung function. Similarly, Vangl2Lp/+ mice show a small but significant reduction in kidney glomeruli.

Planar cell polarity (PCP) is a developmental signaling mechanism that establishes a polarity within the plane of an epithelium. PCP has been shown to play a role in guiding numerous neurodevelopmental processes such as convergent extension, neuron migration, and axon pathfinding. Certain commissural neurons in the dorsal spinal cord make a series of guidance decisions en route to the brain: first, a ventral projection along the D-V axis, followed by a midline crossing, and after exiting the floorplate, a dorso-anterior turn along the A-P axis. Here, we provide in vivo evidence that the axons of the Commissural Primary Ascending (CoPAs) neurons in zebrafish require the PCP genes fzd3a, vangl2, and scribble for rostral pathfinding both before and after crossing the midline. Dorsoventral guidance of CoPA axons is unaltered in fzd3a, vangl2, and scribble mutants, suggesting that the PCP signaling pathway only controls A-P guidance of CoPAs. Our results have provided evidence for two potential non- mutually exclusive models: (i) A-P axon guidance is achieved by cell-autonomous Wnt-Frizzled signaling or that (ii) A-P axon guidance is achieved by non-cell-autonomous PCP signaling in the neuroepithelial environment. The single-cell nature of the CoPA axon system allows for simple genetic manipulation and visualization, which will potentially elucidate the validity of either model. Scribble (Scrib), a member of the LAP family, plays a critical role in establishing and regulating cell polarization in epithelia and during cell migration. In zebrafish, Scrib mutants have defects in convergent extension (CE) cell movements and facial branchiomotor neuron (FBMN) migration. Despite our understanding of Scrib’s genetic role in neurodevelopment, little is known about the subcellular localization of endogenous Scrib in vivo during CE and FBMN migration. We have generated a monoclonal antibody against the C-terminus of zebrafish Scrib and have shown that this antibody is specific against endogenous Scrib in both western blot and immunocytochemical applications. Confocal microscopy of Scrib immunocytochemistry shows that at various developmental stages, Scrib distinctly localizes to basolateral membranes of non polarized epithelium, to the membrane in mesodermal cells undergoing CE, and to the membrane of migrating FBMNs. Furthermore, the distribution of Scrib puncta along membranes of FBMN- FBMN contact is significantly altered in the PCP mutant pk1b. Further application of our newly generated Scrib antibody will potentially lead to new insight on Scrib’s role in neurodevelopment.

Extracellular signal-regulated kinases (ERKs) modulate cellular activities in response to extracellular stimuli and play important biological roles. Thus, perturbed kinase pathways induce pathological conditions, such as tumor development. Rit, a novel member of the Ras family GTPases, activase ERK6, and its over-expression confers tumorigenicity. We hypothesized the presence of scaffolding molecules specific to ERK6, similar to other known MAP kinases. We performed yeast two-hybrid assays using ERK6 as bait, and Scribble was identified as a binding partner. Scribble contains 16 LRR domains and four PDZ domains. We performed immunoprecipitation (IP) assays and discovered ERK2 as another binding partner. Surprisingly, no interaction was observed with the highly homologous MAP kinase, ERK1. No other representative kinases showed binding capabilities with Scribble. IP data confirmed that both ERK2 and ERK6 bind to Scribble through its LRR and PDZ domains. Deletion of ten aminoi acids from the C-terminus of ERK2 and ERK6 abolished these interactions. In vitro kinase assays indicated the kinase suppressing ability of Scribble. Focus formation assays were performed with RitQ79L and H-RasV12 as constitutive activators of ERK6 and ERK2, respectively, in the presence of Scribble. Results confirmed the role of Scribble as a tumor suppressor.