Les produits de contraste ultrasonore constituent un véritable apport pour l'imagerie échographique et sont aujourd'hui utilisés en clinique pour l'évaluation de la perfusion cardiaque ou encore la détection de tumeurs. Depuis quelques années, les transducteurs capacitifs micro-usinés (cMUTs) se présentent comme une alternative intéressante aux transducteurs piézoélectriques classiques et offrent certains avantages comme une large bande passante. Nous proposons dans cette thèse d'évaluer le potentiel de cette technologie pour l'imagerie de contraste. Dans un premier temps, notre étude s'est orientée vers l'adaptation des cMUTs à l'imagerie non linéaire. Ensuite, de nouvelles méthodes de détection de contraste, basées sur le comportement spécifique des microbulles, ont été développées pour exploiter les avantages de la technologie cMUT. Comparés aux méthodes conventionnelles, les résultats obtenus montrent une meilleure visualisation des agents de contraste par rapport aux tissus environnants. L'utilisation de cMUTs améliore l'efficacité de ces méthodes démontrant, ainsi, leur intérêt pour l'imagerie de contraste.

Results from models that describe frequency chirps of toroidal Alfvén eigenmode excited by energetic particles are presented here. This structure forms in TAE gap and may or may not chirp into the continuum. Initial work described the particle wave interaction in terms of a generic Hamiltonian for the particle wave interaction, whose spatial dependence was xed in time. In addition, we have developed an improved adiabatic TAE model that takes into account the spatial prole variation of the mode and the nite orbit excursion from the resonant ux surfaces, for a wide range of toroidal mode numbers. We have shown for the generic xed prole model that the results from the adiabatic model agree very well with simulation result except when the adiabatic condition breaks down due to the rapid variations of the wave amplitude and chirping frequency. We have been able to solve the adiabatic problem in the case when the spatial prole is allowed to vary in time, in accord with the structure of the response functions, as a function of frequency. All the models predict that up-chirping holes do not penetrate into the continuum. On the other hand clump structures, which down chirp in frequency may, depending on detailed parameters, penetrate the continuum. The systematic theory is more restrictive than the generic theory, for the conditions that enable clump to penetrate into the continuum. In addition, the systematic theory predicts an important nite drift orbit width eect, which eventually limits and suppresses a down-chirping response in the lower continuum. This interruption of the chirping occurs when the trapped particles make a transition from intersecting both resonant points of the continuum to just one resonant point. / text

Severe flooding events in subtropical southern Africa are not uncommon and can cause damage to infrastructure, lead to huge economic losses, and fatalities. Although extreme rainfall events can have far-reaching negative consequences, they can also provide large amounts of freshwater within a short time span, which supports the rain-fed farming upon which much of the population depends. However, the mechanisms through which extreme rainfall is produced in southern Africa are still not well understood. In particular, relatively little is known about where the moisture, a key ingredient in the rainfall, is sourced and how it is transported into the region. This thesis aims to address some of the gaps in this understanding by examining the moisture sources and subsequent moisture transport moisture into one of the key river basins in southern Africa, the Limpopo River Basin (LRB). The LRB, located in eastern southern Africa and spanning four countries, has experienced a number of extreme flooding events over the last three decades. Using CHIRPS satellite merged rainfall data for 1981-2016, the thesis identified the top 200 heavy extreme rainfall events in the LRB and the associated weather systems. It was found that tropicalextratropical cloud bands account for almost half of the events and tropical lows are responsible for just over a quarter. The remaining quarter of the events are associated with mesoscale convective systems and cut-off lows, the latter more important during transition seasons. Most of the events occur in the late summer when tropical lows and cloud bands are more common. Some relationships between the frequency of heavy rainfall events over the LRB and interannual climate modes of variability such as ENSO, SIOD, and SAM were found. Having examined the annual cycle of the top 200 heavy rainfall events, the analysis then applied the Lagrangian trajectory model HYSPLIT, with NCEP II reanalysis data as input, to backtrack air parcels from the LRB to their moisture source on seasonal scales and in terms of the types of weather systems involved. The resulting trajectories show that the seasonal transport of moisture over the LRB originates from seven moisture source regions; namely, local continental, tropical southeast Atlantic Ocean, midlatitude South Atlantic Ocean, tropical Northwest Indian Ocean, tropical southwest Indian Ocean, subtropical southwest Indian Ocean, and the Agulhas Current. Important differences in moisture source regions and pathways exist between early (OctoberDecember) and late (January-April) summers, with the tropical northwestern Indian Ocean and the northern Agulhas Current sources more prominent during JFMA than OND. Generally, moisture v source regions and transport pathways for LRB tend to be influenced by both the regional summer season circulation and the synoptic systems involved. Thus, it was found that cloud band and tropical low events within the top 200 tend to have the Congo Basin as an important moisture source whereas this source is less evident for cut-off low events. To help assess the robustness of the composite synoptic approach, the final part of the thesis applied the Lagrangian analysis to the most severe case in the top 200 events over the LRB (11- 21 January 2013). It was found that this case was largely linked to three main moisture sources: (1) tropical northwest Indian Ocean, (2) the Agulhas Current / Mozambique Channel, subtropical Southwest Indian Ocean, and (3) continental sources over the Congo Basin and northern Tanzania. Generally, the moisture source regions and pathways for the January 2013 event agreed with the climatological moisture source regions over the LRB, apart from the obvious absence of the tropical southeast Atlantic source in this case. In general, the thesis has provided a better understanding of the characteristics of heavy rainfall events over the LRB in terms of their associated weather systems, seasonality, interannual variability, and moisture source regions and trajectories.

In this thesis, I characterise five species of the bushcricket genus Mecopoda with respect to their acoustic signals and morphology and investigate the phenomenon of acoustic synchrony in one of these five species: Mecopoda ‘Chirper’. In several bushcricket species, individual males synchronise their chirps during acoustic interactions. Synchrony is imperfect and the chirps of the males lead or follow each other by a short duration of time. Imperfect synchrony is believed to have evolved in response to female preferences for leading chirps. This model of the evolution of acoustic synchrony, however, depends on assumptions about the physiological mechanism of acoustic interaction between individual males and also on the presence of selective attention to a restricted number of neighbours. Neither of these two assumptions has previously been investigated in the species Mecopoda ‘Chirper’ and the implications of these for the evolution of acoustic synchrony is unknown. Furthermore, the advantage of leading chirps for males in the field, given trade-offs between the advantages of lead and intensity and the spacing of males has not been investigated in any bushcricket. In this thesis, I address these questions using a combination of behaviour, neurophysiology and computer simulations. Five distinct song types of the genus Mecopoda were found in Southern India. Four were morphologically indistinguishable. Some of them were both sympatric and had synchronous breeding seasons. The songs of these five song types ranged from simple short chirps to highly complex songs with multiple components. The temporal patterns of the songs were very distinctive, whereas their spectral features were similar. Component elements of the different songs were distinct despite overall similarity. The song types possibly represent sibling species. The mechanism underlying synchrony in the species Mecopoda ‘Chirper’ differs from previously reported mechanisms in that it involves both a change in the oscillator’s intrinsic rate and resetting on a chirp-by-chirp basis. The form of the phase response curve differs from those of previously reported firefly and bushcricket species including the closely related Malaysian species Mecopoda elongaa. Simulations exploring oscillator properties showed that the outcome of pairwise interactions was independent of initial phase and alternation was not possible. Solo intrinsic chirp period was a relatively good predictor of leading probability. Changing the intrinsic period during interactions could, however, enable males with longer periods to lead during acoustic interactions. In choruses in the field, chirp period and hence lead probability of males had low repeatability with no consistent ‘leaders’ and ‘followers’ across nights. During acoustic interactions, sixty percent of followers called oftener when leaders were not calling. Spacing enabled some softer males to gain areas where they were the loudest of all males in a chorus. Thus followers in choruses potentially have different strategies at their disposal by which they could offset their disadvantage in attracting mates. In neurophysiological experiments investigating selective attention, louder, leading chirps were preferentially represented in the auditory system but the representation of softer following chirps was not completely abolished. Following chirps that were 20 decibels louder than leading chirps were better represented than leading chirps. During acoustic interactions in response to playback, males synchronised with leading chirps even when the following chirps were 20 dB louder. Males did not restrict their attention to louder chirps during interactions but were affected by all chirps above a particular threshold intensity . In the field, males on average had only one or two neighbours whose calls were above this threshold. Selective attention in this species is thus achieved through spacing rather than neurophysiological filtering of softer signals. A simulation that combined these results to investigate the evolution of synchrony, revealed that the strategy of responding to one’s neighbours and synchronising with them was able to invade a population of males that did not respond to their neighbours only upto a point. The responder strategy was also not evolutionarily stable and could be invaded by the non-responder strategy. In both cases, the population stabilised at a point where the number of males with either strategy were approximately equal. This was true even if a different physiological resetting mechanism was assumed. The results also held true across a range of male aggregation patterns and different possible female preference values for time-intensity trade-off and lead windows. Thus it appears that though a responder strategy can spread in a population up to a proportion of approximately 0.5, it cannot completely take over a population, if the only selective advantage to synchronising males is due to female preference for leading chirps.

Les produits de contraste ultrasonore constituent un véritable apport pour l’imagerie échographique et sont aujourd’hui utilisés en clinique pour l’évaluation de la perfusion cardiaque ou encore la détection de tumeurs. Depuis quelques années, les transducteurs capacitifs micro-usinés (cMUTs) se présentent comme une alternative intéressante aux transducteurs piézoélectriques classiques et offrent certains avantages comme une large bande passante. Nous proposons dans cette thèse d’évaluer le potentiel de cette technologie pour l’imagerie de contraste. Dans un premier temps, notre étude s’est orientée vers l’adaptation des cMUTs à l’imagerie non linéaire. Ensuite, de nouvelles méthodes de détection de contraste, basées sur le comportement spécifique des microbulles, ont été développées pour exploiter les avantages de la technologie cMUT. Comparés aux méthodes conventionnelles, les résultats obtenus montrent une meilleure visualisation des agents de contraste par rapport aux tissus environnants. L’utilisation de cMUTs améliore l’efficacité de ces méthodes démontrant, ainsi, leur intérêt pour l’imagerie de contraste. / Using ultrasound contrast agents, many clinical diagnoses have now been improved thanks to new contrast dedicated imaging techniques. Contrast agents are now used routinely in cardiology and in radiology to improve the detection and visualization of blood perfusion in various organs (e.g. tumors). Since a few years, Capacitive Micromachined Ultrasonic Transducers (cMUTs) have emerged as a good alternative to traditional piezoelectric transducer. cMUTs provide several advantages such as wide frequency bandwidth which could be further developed for nonlinear imaging. In this dissertation, we propose to exploit cMUT for contrast agent imaging. Firstly, the excitation signal was adapted to suppress the inherent nonlinear behavior of cMUT. Then, new detection methods based on specific acoustic properties of microbubbles have been developed and evaluated with a cMUT probe. Results show a good suppression from tissue responses whereas echoes from microbubbles are enhanced. Furthermore, the efficiency of each method is improved by the use of cMUT revealing the potential of this new transducer technology for contrast agent detection.

This dissertation explores the role of brainstem structures in the development and expression of generalized tonic-clonic seizures. The functional consequences of brainstem seizures are investigated using the kindling paradigm in order to understand the behavioral and cognitive effects of generalized seizures. <BR><BR> I begin by investigating the general characteristics of brainstem kindling. The first experiment demonstrates that certain brainstem sites are indeed susceptible to kindling and begins to delineate the features that distinguish brainstem seizures from those evoked at other brain regions. Further investigation of the EEG signal features using wavelet analysis reveals that changes in the spectral properties of the electrographic activity during kindling include significant changes to high-frequency activity and organized low-frequency activity. I also identify transitions that include frequency sweeps and abrupt seizure terminations. The changing spectral features are shown to be critically associated with the evolution of the kindled seizures and may have important functional consequences. The surprising responsiveness of some brainstem structures to kindling forces us to reconsider the overall role of these structures in epileptogenesis as well as in the healthy dynamical functioning of the brain. <BR><BR> In order to study the functional consequences, a series of experiments examines the changes in behavior, cognition and affect that follow these brainstem seizures. Although the results show no effects on spatial learning or memory, there are significant and complex effects on anxiety- and depression-like behavior that appear to be related to motivation. In order to further study the cognitive effects, a second set of behavioral experiments considers how context (i.e., the environment) interacts with the behavioral changes. The results indicate that changes in affect may only be apparent when choice between seizure-related and seizure-free contexts is given, suggesting that the environment and choice can play key roles in the behavioral consequences of seizures. This thesis also includes an appendix that applies synchrotron imaging to investigate the anatomical consequences of electrode implantation in kindling and shows that significantly increased iron depositions occur even with purportedly biocompatible electrodes widely used in research and clinical settings. <BR><BR> Examination of the role of brainstem structures in generalized seizures in this dissertation offers new perspectives and insights to epileptogenesis and the behavioral effects of epilepsy. The changes in EEG features, behavior, affect and motivation observed after brainstem seizures and kindling may have important clinical implications. For example, the results suggest a need to reexamine the concept of psychogenic seizures, a potential connection to Sudden Unexplained Death in Epilepsy (SUDEP), and the contribution of environmental factors. It is hoped that these findings will help elucidate the complex issues involved in understanding and improving the quality of life for people with epilepsy.

This dissertation explores the role of brainstem structures in the development and expression of generalized tonic-clonic seizures. The functional consequences of brainstem seizures are investigated using the kindling paradigm in order to understand the behavioral and cognitive effects of generalized seizures. <BR><BR> I begin by investigating the general characteristics of brainstem kindling. The first experiment demonstrates that certain brainstem sites are indeed susceptible to kindling and begins to delineate the features that distinguish brainstem seizures from those evoked at other brain regions. Further investigation of the EEG signal features using wavelet analysis reveals that changes in the spectral properties of the electrographic activity during kindling include significant changes to high-frequency activity and organized low-frequency activity. I also identify transitions that include frequency sweeps and abrupt seizure terminations. The changing spectral features are shown to be critically associated with the evolution of the kindled seizures and may have important functional consequences. The surprising responsiveness of some brainstem structures to kindling forces us to reconsider the overall role of these structures in epileptogenesis as well as in the healthy dynamical functioning of the brain. <BR><BR> In order to study the functional consequences, a series of experiments examines the changes in behavior, cognition and affect that follow these brainstem seizures. Although the results show no effects on spatial learning or memory, there are significant and complex effects on anxiety- and depression-like behavior that appear to be related to motivation. In order to further study the cognitive effects, a second set of behavioral experiments considers how context (i.e., the environment) interacts with the behavioral changes. The results indicate that changes in affect may only be apparent when choice between seizure-related and seizure-free contexts is given, suggesting that the environment and choice can play key roles in the behavioral consequences of seizures. This thesis also includes an appendix that applies synchrotron imaging to investigate the anatomical consequences of electrode implantation in kindling and shows that significantly increased iron depositions occur even with purportedly biocompatible electrodes widely used in research and clinical settings. <BR><BR> Examination of the role of brainstem structures in generalized seizures in this dissertation offers new perspectives and insights to epileptogenesis and the behavioral effects of epilepsy. The changes in EEG features, behavior, affect and motivation observed after brainstem seizures and kindling may have important clinical implications. For example, the results suggest a need to reexamine the concept of psychogenic seizures, a potential connection to Sudden Unexplained Death in Epilepsy (SUDEP), and the contribution of environmental factors. It is hoped that these findings will help elucidate the complex issues involved in understanding and improving the quality of life for people with epilepsy.