Le complexe Scar/WAVE génère la formation des lamellipodes par l'intermédiaire du complexe Arp2/3 responsable de la polymérisation de réseaux d'actine branchés. Dans le but d'identifier de nouveaux régulateurs du complexe Scar/WAVE, nous avons conduit un crible en cellules de Drosophiles combinant une approche protéomique à une approche de génomique fonctionnelle. La chaîne lourde de la clathrine a été identifiée au cours de ce crible comme une protéine interagissant avec le complexe Scar/WAVE et dont la déplétion affecte la formation des lamellipodes. Ce rôle de la clathrine dans la formation des lamellipodes peut être découplé de son rôle classique dans le transport vésiculaire en utilisant différentes approches. De plus, la clathrine est localisée au lamellipode en l'absence d'adapteurs et des protéines accessoires de l'endocytose. La surexpression de la clathrine affecte le recrutement membranaire du complexe WAVE réduisant ainsi la vélocité des protrusions membranaire et la migration cellulaire. Par opposition, lorsque la clathrine est envoyée artificiellement à la membrane plasmique par une fusion à une séquence myristoylée, on observe une augmentation du recrutement membranaire du complexe Scar/WAVE, de la vélocité des protrusions membranaires et de la migration cellulaire. L'ensemble de ces résultats montrent que la clathrine envoie le complexe Scar/WAVE à la membrane plasmique et donc contrôle la formation des lamellipodes en plus de son rôle plus classique dans le traffic membranaire. / The Scar/Wave complex (SWC) generates lamellipodia through Arp2/3-dependent polymerization of branched actin networks. In order to identify new SWC regulators, we conducted a screen in Drosophila cells combining proteomics with functional genomics. This screen identified Clathrin Heavy Chain (CHC) as a protein that binds to the SWC and whose depletion affects lamellipodium formation. This role of CHC in lamellipodium formation can be uncoupled from its role in membrane traffic by several experimental approaches. Furthermore, CHC is detected in lamellipodia in the absence of the adaptor and accessory proteins of endocytosis. We found that CHC overexpression decreased membrane recruitment of the SWC, resulting in reduced velocity of protrusions and reduced cell migration. In contrast, when CHC was targeted to the membrane by fusion to a myristoylation sequence, we observed an increase in membrane recruitment of the SWC, in protrusion velocity and in cell migration. Together these data suggest that CHC brings the SWC to the plasma membrane, thereby controlling lamellipodium formation, in addition to its classical role in membrane traffic.

Clathrin-mediated endocytosis is a process by which cells can internalise diverse molecules such as nutrients, antigens and signalling-surface receptors. The creation of clathrin-coated vesicles demands interplay between the plasma membrane lipids, cargo molecules and the proteins that build up the coat. This thesis deals with the identification and characterisation of sorting nexin 9 (SNX9) as a novel component of the endocytic machinery. SNX9 belongs to a large family of proteins based on the presence of a PX domain. In addition, SNX9 harbours an SH3 domain followed by a region with predicted low-complexity and a C-terminal BAR homology domain. Binding studies demonstrated that SNX9 interacted with the endocytic core components clathrin and AP-2 and dynamin-2, a GTPase known to be crucial for vesicle scission. The C-terminal region bound to phosphatidylinositols and targeted SNX9 to artificial liposomes and cellular membranes. Consistent with a role in endocytosis, a large portion of SNX9 co-localised with AP-2 and dynamin-2 but not with markers for early endosomes, Golgi. Over-expression of truncated variants of SNX9 in K562 and HeLa cells interfered with the uptake of transferrin. SNX9 recycles between a membrane-bound and a cytosolic pool. In cytosol, SNX9 formed a resting complex together with dynamin-2 and the metabolic enzyme aldolase. Activation for membrane binding involved ATP hydrolysis and correlated with phosphorylation of SNX9 and the release of aldolase. Aldolase bound to a tryptophan-containing acidic region near the clathrin and AP-2 motifs and blocked lipid binding of purified SNX9 derivatives. SNX9 was required for membrane targeting of dynamin2 in vitro and knockdown of SNX9 in HeLa cells by RNAi resulted in impaired membrane localisation. Together these results argue strongly for a role of SNX9 in recruiting and linking of dynamin-2 to sites of vesicle creation.

Regulated secretion of hormones, digestive enzymes and other biologically active molecules requires formation of secretory granules. However, the molecular machinery required for secretory granule biogenesis is incompletely understood. I used powerful genetic approaches available in the fruit fly Drosophila melanogaster to investigate the factors required for biogenesis of mucin-containing ‘glue granules,’ which form within epithelial cells of the third-instar larval salivary gland. I discovered that clathrin and the clathrin adaptor protein complex (AP-1), as well the enzyme type II phosphatidylinositol 4-kinase (PI4KII), are indispensable for glue granule biogenesis. Clathrin and AP-1 are necessary for maturation of exocrine, endocrine and neuroendocrine secretory granules in mammalian cells. I found that Drosophila clathrin and AP-1 colocalize at the TGN and that clathrin recruitment requires AP-1. I further showed that clathrin and AP-1 colocalize with secretory cargo at the TGN and on glue granules. Finally, I demonstrated that loss of clathrin or AP-1 leads to a profound block in secretory granule biogenesis. These findings establish a novel role for AP-1/clathrin-dependent trafficking in the formation of mucin-containing secretory granules. Type II phosphatidylinositol 4-kinase (PI4KII) generates the membrane lipid phosphatidylinositol 4-phosphate (PI4P) at the trans-Golgi network and is required to recruit cargo to endosomes in mammalian cells. I generated null mutations in the sole Drosophila PI4KII and demonstrated a role for PI4KII in both glue granule and pigment granule biogenesis. PI4KII mutant salivary gland cells exhibit small glue granules and mislocalize glue protein to abnormally large late endosomes. Additionally, PI4KII mutants exhibit altered distribution of the granule specific SNARE, SNAP-24. These data point to a crucial role for PI4KII in sorting of regulated secretory products during granule biogenesis. Together, my results indicate that the larval salivary gland is a valuable system for investigating molecular mechanisms involved in secretory granule biogenesis, and provide a framework for future studies using this system.

Synucleins represent a conserved family of small proteins that include α-, β-, and γ- isoforms, which are highly expressed in neurons of the vertebrate nervous system. The normal function of these proteins is not well understood. However, in humans α- synuclein dysfunction is causatively linked to Parkinson’s Disease (PD), where it abnormally accumulates in neuronal cell bodies as protein aggregates that are associated with neuronal death. Although the associations between synuclein accumulation and cellular death are established in PD, the extent to which this occurs in other contexts, such as neuronal injury, is unknown. Furthermore, the effects of synuclein aggregation on the function of synapses, where synuclein is normally localized, are not well understood. To address these questions I took advantage of the experimentally accessible nervous system of the sea lamprey (Petromyzon marinus). I used molecular cloning and phylogenetic analyses to characterize three lamprey synuclein orthologues, one of which is highly expressed within a class of neurons called the giant reticulospinal (RS) neurons. Spinal cord injury induces the accumulation of synuclein protein only within a population of poor surviving RS neurons, and this accumulation is correlated with cellular death. Thus, similar to PD, the abundance of synuclein protein is associated with neuronal toxicity. In a related project, I demonstrated that elevating synuclein levels at synapses, such as occurs in PD, is deleterious to synaptic function through an inhibition of synaptic vesicle (SV) recycling. By injecting excess synuclein protein directly into the axons of giant RS neurons, and analyzing the ultrastructural morphology of synapses, I have shown that clathrin-mediated synaptic vesicle endocytosis was greatly inhibited. The conserved N-terminal domain was sufficient to inhibit vesicle recycling, and injecting synuclein mutants with disrupted N-terminal α-helices caused reduced defects in SV recycling. Therefore the α-helical structure of the N-terminus is necessary to inhibit SV recycling at early stages of clathrin-mediated endocytosis. Binding interactions with clathrin-mediated endocytosis components, such as the phosphoinositide lipid PI(4)P support this hypothesis. These studies provide a better understanding of the mechanisms by which synuclein dysfunction leads to neuronal death after injury and synaptic dysfunction in PD and other synuclein-associated diseases. / text

Dans les cellules eucaryotes, le trafic intracellulaire de nombreuses protéines est assuré par des vésicules de transport tapissées de clathrine. Les complexes adaptateurs de clathrine (AP) sont responsables de l’assemblage de ces vésicules et de la sélection des protéines qui seront transportées. Nous avons étudié cinq familles atteintes du syndrome neurocutané MEDNIK qui est caractérisé par un retard mental, une entéropathie, une surdité, une neuropathie périphérique, de l’icthyose et de la kératodermie. Tous les cas connus de cette maladie à transmission autosomique récessive sont originaires de la région de Kamouraska, dans la province de Québec. Par séquençage direct des gènes candidats, nous avons identifié une mutation impliquant le site accepteur de l’épissage de l’intron 2 du gène codant pour la sous-unité σ1 du complexe AP1 (AP1S1). Cette mutation fondatrice a été retrouvée chez tous les individus atteints du syndrome MEDNIK et altère l’épissage normal du gène, menant à un codon stop prématuré. Afin de valider l’effet pathogène de la mutation, nous avons bloqué la traduction de cette protéine chez le poisson zébré en injectant une séquence d’oligonucléotides antisenses spécifique à AP1S1. À 48 heures après la fertilisation, les larves knock down pour AP1S1 montrent une réduction de la pigmentation, une désorganisation de la structure de l’épiderme et une perturbation du développement moteur. Alors que la surexpression de l’AP1S1 humain dans ce modèle a permis la récupération du phénotype normal, l’expression de l’AP1S1 mutant fut sans effet sur les phénotypes moteurs et cutanés des larves knock down. Les résultats obtenus montrent que la mutation du AP1S1 responsable du syndrome de MEDNIK est associée à une perte de fonction et que la sous-unité σ1 du complexe AP1 joue un rôle crucial dans l’organisation de l’épiderme et le développement de la moelle épinière. / Intracellular protein transport between organelles is mainly mediated by clathrin coated vesicles. Clathrin adaptor protein (AP) complexes participate in clathrin coated vesicle formation and in sorting protein cargo. We studied 5 families with MEDNIK syndrome, which is characterized by mental retardation, enteropathy, deafness, neuropathy, ichtyosis and keratoderma. All families affected with this autosomal recessive syndrome originate from an isolated population in the Kamouraska region of Quebec. The candidate genes identified in the positive region were sequenced and a founder mutation was identified in the acceptor splice slice of intron 2 of the AP1S1 gene. This gene encodes for the small subunit σ1 of the complex adaptor 1 (AP1). This splicing mutation leads to a premature stop codon, which is predicted to alter the normal function of this protein. To validate the pathogenic effect of this mutation we blocked the AP1S1 protein translation in zebrafish by injecting an anti-sense oligonucleotide designed against AP1S1. At 48 hours post fertilisation, the knockdown larvae showed reduced pigmentation, perturbation of skin formation, and severe perturbation of motor development and function motor development. Over expression of the human AP1S1 rescued the normal phenotype whereas the expression of the mutant AP1S1 did not. These results show that this mutation is causative for MEDNIK syndrome and demonstrates a critical role of the small subunit σ1 in epidermal organisation and in the development of the spinal cord.

Regulated secretion of hormones, digestive enzymes and other biologically active molecules requires formation of secretory granules. However, the molecular machinery required for secretory granule biogenesis is incompletely understood. I used powerful genetic approaches available in the fruit fly Drosophila melanogaster to investigate the factors required for biogenesis of mucin-containing ‘glue granules,’ which form within epithelial cells of the third-instar larval salivary gland. I discovered that clathrin and the clathrin adaptor protein complex (AP-1), as well the enzyme type II phosphatidylinositol 4-kinase (PI4KII), are indispensable for glue granule biogenesis. Clathrin and AP-1 are necessary for maturation of exocrine, endocrine and neuroendocrine secretory granules in mammalian cells. I found that Drosophila clathrin and AP-1 colocalize at the TGN and that clathrin recruitment requires AP-1. I further showed that clathrin and AP-1 colocalize with secretory cargo at the TGN and on glue granules. Finally, I demonstrated that loss of clathrin or AP-1 leads to a profound block in secretory granule biogenesis. These findings establish a novel role for AP-1/clathrin-dependent trafficking in the formation of mucin-containing secretory granules. Type II phosphatidylinositol 4-kinase (PI4KII) generates the membrane lipid phosphatidylinositol 4-phosphate (PI4P) at the trans-Golgi network and is required to recruit cargo to endosomes in mammalian cells. I generated null mutations in the sole Drosophila PI4KII and demonstrated a role for PI4KII in both glue granule and pigment granule biogenesis. PI4KII mutant salivary gland cells exhibit small glue granules and mislocalize glue protein to abnormally large late endosomes. Additionally, PI4KII mutants exhibit altered distribution of the granule specific SNARE, SNAP-24. These data point to a crucial role for PI4KII in sorting of regulated secretory products during granule biogenesis. Together, my results indicate that the larval salivary gland is a valuable system for investigating molecular mechanisms involved in secretory granule biogenesis, and provide a framework for future studies using this system.

Made available in DSpace on 2015-07-22T20:50:09Z (GMT). No. of bitstreams: 0 Previous issue date: 2010-11-24 / O ultrassom (US) vem sendo amplamente utilizado para melhorar a eficiência de transfecção de vetores não-virais. No entanto, o mecanismo pelo qual o US promove a entrega de DNA nas células ainda é pouco entendido. Este fenômeno é normalmente atribuído a sonoporação. Porém, com base em experimentos anteriores realizados em nosso laboratório, suspeitamos que outro mecanismo esteja envolvido no processo de captação de DNA. Para estudar o mecanismo de entrega, um vetor plasmideal expressando EGFP (pEGFP-N3, 4,7 kb) foi utilizado para transfectar células NIH3T3 com um aparelho de US terapêutico sem a adição de microbolhas. Em condições de insonação de 2 W/cm2, duty cycle de 20% por 30s o US promoveu cerca de 40% de eficiência de transfecção, mas com 1 W/cm2 resultou em níveis muito baixos de transfecção. Fixados esses parâmetros, também foi avaliada a produção de espécies reativas de oxigênio (ROS), o aumento da concentração intracelular de cálcio ([Ca2+]i) e as alterações no potencial de membrana através de microscopia confocal. A produção de ROS foi aumentada durante a insonação, sendo interrompida logo que o US foi desligado. A [Ca2+]i também foi aumentada durante a exposição ao US, mas seus níveis não retornaram ao basal durante os 3 minutos de observação. Porém, 1 W/cm2 não foi suficiente para mobilizar o cálcio durante a insonação, e o influxo de cálcio teve início apenas 12 segundos após o término do US. Quando expostas ao US, as células também apresentaram mudanças no potencial de membrana atingindo um estado de hiperpolarização, retornando ao estado normal logo que o US foi desligado. A alteração desses três parâmetros pelo US sugere que a entrega de DNA plasmideal deva ocorrer por endocitose. Por fim, utilizando DNA plasmideal fluorescente, mostramos que esta molécula entra na célula via endocitose mediada por clatrina. / Ultrasound (US) has been widely used to improve the efficiency of non-viral vector transfection. However, the mechanism that enables the uptake of plasmid DNA in cells by US insonation is poorly understood, but it is typically attributed to sonoporation. Based on our previous results, we hypothesized that other mechanisms, such as endocytosis, are involved in this process. To explore the mechanism of plasmid DNA uptake, a plasmid vector expressing EGFP (pEGFP-N3: 4.7 kb) was used to transfect NIH3T3 cells using a therapeutic US without microbubbles and was monitored in real-time using a confocal microscope. We achieved about 40% transfection efficiency when we applied 2 W/cm2 with 20% of duty-cycle for 30 s, but 1 W/cm2 resulted in a very low level of transfection. In these experiments, the production of reactive oxygen species was augmented during the insonation but was stopped soon after turning off the US. Calcium influx was also augmented during the insonation, but its level did not return to basal levels following the 3-min observation period. However, 1 W/cm2 was not sufficient to mobilize calcium influx during the insonation, and calcium influx began 12 s after turning off the US. US insonation also changed the cell membrane potential to promote a hyperpolarization state, which returned to the normal state soon after turning off the US. The alteration of these parameters by US indicates the uptake of plasmid DNA by endocytosis. Finally, using a fluorescently labeled plasmid, we showed that this molecule enters into cells via clathrin-mediated endocytosis, not via caveolin-1. / TEDE / BV UNIFESP: Teses e dissertações

Toxoplasma gondii, l'agent causal de la toxoplasmose appartient au phylum des Apicomplexes. Comme son nom l'indique, le parasite possède un complexe unique d'organites sécrétoires apicaux, les micronèmes, rhoptries et le conoïde, qui jouent un rôle essentiel dans l’invasion de la cellule hôte et la survie du parasite. T. gondii est devenu un modèle populaire de biologie cellulaire et aussi un outil de référence pour l'étude de l’organisation ultra-structurale et des différentes fonctions des autres parasites du phylum Apicomplexa tel que Plasmodium, l’agent causal de la malaria. Cette thèse porte sur deux facteurs essentiels à la survie du parasite : le complexe adapteur de la clathrine AP1 et la petite GTPase Rab11A qui jouent un rôle crucial dans la régulation de certaines voies du trafic intracellulaire de T. gondii. Ainsi, nos travaux ont permis de démontrer un rôle pour AP1 dans le triage différentiel et le transport vésiculaire des protéines MIC et ROP depuis le Trans-Golgi-Network (TGN) et les compartiments endosomaux, respectivement. D’autre part, nos résultats ont révélé un rôle original de AP1 dans la division parasitaire aux stages tardifs de la cytokinèse. Nous avons également identifié un partenaire de AP1, la protéine unique de T. gondii possédant un domaine ENTH : EpsL (pour Espin-Like Protein). Dans les autres Eucaryotes, les protéines epsines sont connues pour activer la formation des vésicules à clathrine en co-opération avec les complexes AP1 et AP2. Nos résultats ont effectivement démontré un rôle de EpsL, similaire à AP1, pour la biogénèse des rhoptries et micronèmes. Nous avons, dans un deuxième temps, examiné les différentes fonctions de la petite GTPase Rab11A. Notre étude par vidéo-microscopie, semble indiquer que Rab11A régule le transport de vésicules depuis le TGN vers la périphérie cellulaire et en particulier, les pôles basal et apical du parasite. Après sur-production de la forme mutée inactive de Rab11A, nous avons démontré un nouveau rôle de la protéine dans la sécrétion des protéines membranaires de surface et dans l'exocytose des granules denses, lors de l'invasion de la cellule hôte mais aussi durant la réplication parasitaire. Finalement, des expériences de pull-down ont permis d’identifier un partenaire intéressant liant Rab11A seulement sous sa forme activée, la protéine unique de T. gondii contenant un domaine HOOK (TgHOOK), que nous avons caractérisée au niveau fonctionnel. Nos résultats suggèrent que TgHOOK régule le transport des vésicules positives pour Rab11A d’une manière dépendante des microtubules. Par conséquent, cette dernière étude a permis de révéler de nouveaux aspects encore inexplorés, bien qu’essentiels, des mécanismes régulant la sécrétion de molécules à la surface parasitaire. / Toxoplasma gondii, the causative agent for the disease Toxoplasmosis belongs to the phylum Apicomplexa. As the name implies, the parasite possesses a unique complex of apical secretory organelles namely the micronemes, rhoptries and conoid, which favor host cell invasion and intracellular survival. T.gondii has become a popular cell biology model and also a reference tool for studying the structure and functions of other important parasites that belong to the same phylum, such as plasmodium, but also higher eukaryotes. The recent advances in dissecting protein trafficking pathways have led to a better understanding of the biogenesis of apical organelles and also to the identification of crucial protein molecules that could determine the fate of the parasite. This thesis focuses on two different molecules, the Clathrin Adaptor complex AP1 and the small GTPase Rab11A that play a crucial role in distinct trafficking pathways of the parasite contributing to a wide range of functions. First, we reveal a role of AP1 in the differential sorting of microneme and rhoptry proteins at the Tran-Golgi-Network and endosomal level, respectively. Accordingly, depletion of AP1 leads to a defect in apical organelle biogenesis. In addition, we reveal an original role of AP1 in parasite division by regulating late stages of cytokinesis. We also identified and studied a partner of AP1, the unique ENTH domain containing protein of the parasite, EpsL (for Espin-like protein). In other Eukaryotes, epsin proteins are well known regulators of clathrin-mediated vesicular budding in co-operation with AP1 and AP2. We demonstrated that EpsL shares similar functions to AP1 in regulating rhoptry and microneme formation. We next worked on the small GTPase Rab11A and defined the dynamics of the protein within the parasite by live imaging. In addition to its known role in cytokinesis, we unravelled a novel function for the molecule in the secretion of surface membrane proteins and the exocytosis of dense granules during both, parasite invasion and replication. Further, pull down experiments on active Rab11A helped us fish an interesting partner molecule, the unique HOOK-domain containing protein that we functionally characterized for the first time in T.gondii. Our data suggest a role of Rab11A in microtubule-dependent transport of vesicules in a HOOK-regulated manner. Therefore, our study provides novel molecular insights into a yet unexplored but essential aspect of constitutive secretion in the parasite.

Les canaux ioniques sont des déterminants majeurs de la forme et de la durée du potentiel d'action (PA) cardiaque. Leur expression fonctionnelle à la membrane plasmique résulte d'une balance entre les voies antérograde et rétrograde du trafic intracellulaire, ainsi que de leur prise en charge par des compartiments endosomaux afin d'être recyclés ou dégradés. Le canal KV1.5 porte le courant principal de repolarisation atriale chez l'homme, IKur, et est impliqué dans la physiopathologie de la fibrillation atriale (FA). La FA est caractérisée par un raccourcissement de la durée du PA lié à un courant IKur augmenté et un courant ICaL diminué et est favorisée par l'augmentation des contraintes mécaniques. Ainsi, le canal KV1.5 constitue une cible majeure pour le développement d'anti-arythmiques spécifiques de l'oreillette. Ce projet avait pour but de mieux comprendre comment est régulée l'expression fonctionnelle des canaux KV1.5 dans les myocytes atriaux. Dans un premier temps, nous avons montré que le shear stress entraîne une augmentation du courant IKur impliquant la voie de mécanotransduction intégrine?1/FAK et l'endosome de recyclage lent. Dans les cellules hypertrophiées, cette voie de mécanotransduction est hyperactivée et le courant IKur est ainsi augmenté. Dans un second temps, nous avons montré que la voie d'endocytose des canaux KV1.5 est dépendante de la clathrine et que les microtubules sont principalement impliqués dans l'internalisation et la dynamique du canal à la surface des cellules. Ainsi, ce travail a permis de mieux caractériser les acteurs du trafic impliqués dans la régulation de l'expression fonctionnelle du canal KV1.5 dans les cardiomyocytes atriaux. / Ion channels are major determinants of shape and duration of the cardiac action potential (AP). Their functional expression at the sarcolemma is a dynamic process resulting from a balance between anterograde (exocytosis) and retrograde (endocytosis) pathways, and the involvement of the endosomal compartments which direct ion channels towards recycling or degradation. KV1.5 channel carries IKur current which constitutes the main atrial repolarizing current in human and which is involved in atrial fibrillation (AF). Mechanical forces and shortening of the AP duration are linked to an increased in IKur current and decreased ICaL current. Therefore, KV1.5 channel constitutes a major target for the development of atria-selective antiarrhythmic drugs. The aim on this project was to better understand how functional expression of KV1.5 channels in atrial myocytes is regulated. Firstly, we showed that shear stress triggers an increase in IKur current implying the integrinβ1/FAK mecanotransduction pathway. This process requires an intact microtubule network and involves the Rab11-associated recycling endosome. In hypertrophied cells, the mecanotransduction pathway is overactivated. Consequently, IKur is increased. Secondly, we demonstrated that KV1.5 channel endocytosis is mediated by the clathrin pathway. We showed that microtubules are involved in the internalization and dynamics of KV1.5 channel in the membrane. Therefore, this work provides a better understanding of the different players involved in the trafficking of KV1.5 channel and shed new lights on the functional regulation of this atria-specific channel.

京都大学 / 新制・課程博士 / 博士(医学) / 甲第24525号 / 医博第4967号 / 新制||医||1065(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 渡邊 直樹, 教授 中川 一路, 教授 秋山 芳展 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM