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Comparative evolutionary and structural analysis of the avian and mammalian CSF1R systemsGutowska, Maria Weronika January 2015 (has links)
Macrophages, phagocytic cells of the immune system involved in host defence, homeostasis and development, are controlled and influenced by a variety of growth factors. In mammals, the colony stimulating factor 1 (CSF1) is a secreted cytokine that controls macrophages survival, proliferation and differentiation. It acts through the CSF1 receptor (CSF1R), a transmembrane receptor tyrosine kinase, expressed mainly in mononuclear phagocytes. Mammalian CSF1R is found exclusively at the surface of the mononuclear phagocytes and their progenitors. CSF1R-/- knockout mice display more severe phenotypes than the CSF1-deficient mice, thus suggesting the existence of another CSF1R ligand. Indeed, recent studies have shown that interleukin 34 (IL34) also binds to and activates CSF1R and regulates monocyte viability in vitro. While the exact role of this protein is yet to be fully elucidated, studies in mammals thus far implied its involvement in embryogenesis and development. CSF1R system is highly conserved within vertebrates and has been identified in variety of mammals. Chicken has been used extensively as a model for vertebrate development and to identify fundamental biological processes. Previous studies by colleagues in the lab demonstrated that the CSF1R system is conserved in the chicken, where it controls the generation of monocytes and tissue macrophages. This thesis provides a thorough evolutionary and structural analysis to fully demonstrate the similarities and differences between avian and mammalian CSF1R systems. The primary objective of this thesis was the comparative functional and structural analyses of the three proteins in birds and mammals, using evolutionary and experimental approaches. Here the presence of CSF1, CSF1R and IL34 genes and protein products is identified in a number of evolutionary diverse birds, indicating that the system is well maintained within the group. Avian genes were cloned and sequenced or otherwise extracted from different databases, and the mammalian sequences were gathered from available online sources. Whilst the gene regulation and the differential expression of the mammalian CSF1R, CSF1 and IL34 are reasonably well understood, they have not been extensively studied in birds. Preliminary comparison between these two groups provided in this thesis suggests a number of similar patterns are involved in regulation of avian CSF1R system. The mammalian CSF1/CSF1R and IL34/CSF1R ligand:receptor peptide interface has been previously resolved and was used to model similar structures in the chicken. The models were then utilised to determine which amino acids are involved in receptor binding in birds. The apparent lack of cross-species reactivity between the chicken CSF1 and zebra finch CSF1R provided a basis for an experimental validation of the in silico binding site predictions. Altogether the structural modelling, evolutionary analysis and experimental confirmation provided sufficient proof for the location of avian CSF1/CSF1R interface. Finally, an extensive bioinformatics analysis has been performed on both the coding DNA and the protein structures of the CSF1R system. The results uniformly showed that IL34 remains under purifying selection in both groups. CSF1 is diverse amongst most mammalian species, while avian CSF1 is only positively selected along particular lineages. This implies the rapid evolution of mammalian CSF1, probably in response to the selection pressure from pathogens. Contrasting situation is found in the CSF1R. Whilst mammalian CSF1R remains positively selected only along particular branches, avian CSF1R presents a number of pervasively positively selected sites, found mostly in the extracellular domains of the receptor. That suggests that in birds it is the receptor, not CSF1, which remains under strong selective pressure. These indicates that birds employ a unique way of competing in the hostpathogen arms race, suggesting the existence of yet unknown pathogen-encoded protein interacting with the avian receptor.
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O papel da microglia no modelo da doença de Parkinson induzido pela 6-hidroxidopamina. / Microglial role in a model of Parkinsons disease induced by 6-hydroxydopamine.Pereira, Carolina Parga Martins 27 June 2019 (has links)
A doença de Parkinson (DP) é considerada a segunda doença neurodegenerativa mais comum em idosos e é caracterizada pela presença de disfunções motoras decorrentes da redução de neurônios dopaminérgicos na substância negra pars compacta (SNpc). Uma das principais neurotoxinas utilizadas para o estudo de DP em modelos animais é a 6-hidroxidopamina (6-OHDA), que possui como mecanismo de neurotoxicidade a formação de espécies reativas de oxigênio (EROs). A liberação de EROs pela NADPH oxidase (Nox) e a ativação microglial constituem os eventos iniciais da neurodegeneração induzida pela 6-OHDA. A Nox2 está relacionada com a modulação dos fenótipos microgliais e encontra-se superativada na DP, levando a um desequilíbrio redox e a danos celulares. A microglia é o principal componente da defesa imune no sistema nervoso central (SNC) e é dependente do receptor fator 1 estimulador de colônias (CSF1R) para a sobrevivência. O inibidor de CSF1R é utilizado como método para depletar microglia em modelos de neurodegeneração e, consequentemente, compreender o impacto da sua eliminação no processo da doença. Baseado nisso, foram propostas duas abordagens para compreender o papel da microglia na progressão da DP induzida pela 6-OHDA, sendo que o primeiro investigou a modulação da ativação microglial pela Nox2 em camundongos nocautes para a subunidade gp91phox, enquanto que o segundo avaliou o impacto da depleção por meio do tratamento com 1200mg/Kg de PLX5622, um tipo de inibidor de CSF1R. Os animais naïves gp91phox-/- apresentaram aumento da proliferação de microglias e da expressão da enzima iNOS. Quando submetidos à 6-OHDA, os nocautes não apresentaram declínio motor em função do tempo avaliado pelo teste do cilindro, devido à maior sobrevivência de neurônios dopaminérgicos na SN em relação aos selvagens (WT). Um dos possíveis fatores relacionados à perda expressiva de neurônios nos WT foi a indução precoce da enzima iNOS, sugerindo que a ativação de Nox2 conjuntamente com iNOS na microglia aumenta os níveis de EROs tornando os neurônios mais susceptíveis à morte celular. Também foram observadas modulações temporais distintas entre os grupos com relação à expressão de CD86 e Arginase-1, além dos nocautes apresentarem baixos níveis de lesões oxidativas no DNA mitocondrial quando comparado com os WT. Assim, a ativação da Nox2 e da iNOS parecem atuar em sinergia no processo neurodegenerativo causado pela 6-OHDA. Por outro lado, os resultados com PLX5622 mostraram que a depleção microglial acelera o comprometimento da coordenação motora e da bradicinesia avaliado pelo teste do poste, bem como reduz o número de neurônios dopaminérgicos na SNpc. Além disso, a redução de células postivas para GFAP, do marcador CD68 e da regulação de genes ligados a microglia foram observados. O gene MeCP2, que está relacionado à via nigroestriatal e que consiste em um importante modulador da expressão de TH, está pouco expresso no grupo submetido à depleção microglial e a 6-OHDA. Esses achados sugerem que a deficiência na comunicação entre microglias e astrócitos, bem como a redução do nível de transcritos do gene MeCP2 causados pela depleção microglial, podem contribuir para a aceleração do processo neurodegenerativo causado pela 6-OHDA. / Parkinson\'s disease (PD) is considered the second most common neurodegenerative disease in elderly people and is characterized by the presence of motor impairment, which is a consequence of dopaminergic neuron loss in the substantia nigra pars compacta (SN). A major neurotoxin used for PD study in animal models is 6-hydroxydopamine (6-OHDA), which exerts neurotoxic effects through the production of reactive oxygen species (ROS). ROS release by the enzyme NADPH oxidase (Nox) and microglial activation are early events of neurodegeneration induced by 6-OHDA. Nox2 is related to modulation of microglia phenotypes and is overactivated in PD, which can lead to redox imbalance and cellular damage. Microglial cells are the main components of immune defense in the central nervous system and are dependent upon Colony-stimulating factor 1 receptor (CSF1R) for survival. The CSF1R inhibitor is used with a tool to deplete microglia in models of neurodegenerative diseases and, consequently, to understand the impact of its elimination in the disease process. Based on that, we proposed two approaches to evaluate the microglial role in the PD progression induced by 6-OHDA, in which the first one investigated the modulation of microglial activation by Nox2 in gp91phox knockout mice, whereas the second one evaluated the impact of microglial depletion through a treatment with 1200 mg/Kg of PLX5622, one type of CSF1R inhibitor. The gp91phox-/- naïve mice showed an increase of microglia proliferation and in the iNOS expression. When the knockout mice were submitted to 6-OHDA, they did not have motor impairments as a function of toxin exposure as evaluated by cylinder test. This result is due to the increase number of dopaminergic neurons survival in SNpc compared to wild type (WT). One of the possible factors involved in neurons death in WT was the early iNOS induction, which indicates that Nox2 and iNOS simultaneous activation in microglial cells enhance ROS levels, leading to neurons more vulnerable to cell death. Moreover, the expression of CD86 and Arginase-1 have differences in temporal modulation between both groups, as well as knockout mice showed lower levels of oxidative damage in mitochondrial DNA when compared with WT. Thus, the activation of Nox2 and iNOS could act sinergically in the neurodegenerative process caused by 6-OHDA.On the other hand, results with PLX5622 indicated that the microglial depletion aggravates the impairment of bradykinesia and motor coordination evaluated by pole test, as well as the reduction of tyrosine hydroxylase (TH) positive neurons in the SNpc. Moreover, the decrease of GFAP positive cells, of CD68 marker and regulation of genes linked to microglia were observed. The MeCP2 gene, related to the nigrostriatal pathway and an important modulator of TH expression, is down-regulated in the group with microglial elimination and submitted to 6-OHDA. These findings suggest that the deficiency of crosstalk between astrocytes and microglia, as well as the reduced MeCP2 transcript levels may contribute to the acceleration of neurodegenerative process initiated by 6-OHDA.
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Origin and maturation of the pulmonary lymphatic endotheliumNorman Jr., Timothy Alfred 14 June 2019 (has links)
The lymphatic vasculature is composed of lymphatic endothelial cells (LECs) that coalesce into a branched hierarchy of small capillaries and larger collecting vessels that regulate interstitial fluids, lipid uptake and immunity. Few studies have focused on pulmonary lymphatic system. To fill these critical knowledge gaps, we interrogated the fetal maturation program of lymphatic endothelium, and we provide evidence that CSF1R-lineage progenitors contribute to LECs in the lung during a temporally defined period in early postnatal life.
The pulmonary lymphatic system is required for fluid clearance and air breathing at birth, suggesting a prenatal maturation program. To interrogate this, we developed a cell sorting strategy to enrich pulmonary LECs by their unique cell surface immunophenotype (CD45-, EPCAM-, CD31+, VEGFR3+, PDPN+, LYVE1+) for transcriptional profiling. These experiments highlighted the coordinate down-regulation of genes involved in “cell cycle”, and “mRNA processing” along with coordinate upregulation of “complement/coagulation cascade”, “lipid metabolism”, and “angiogenesis” genes from embryonic day E16.5 to E18.5. The most significantly enriched gene set corresponded to the “interferon-alpha/beta signaling” pathway which was confirmed with qRT-PCR and in-situ hybridization. These data provide the first description of the transcriptional landscape of fetal pulmonary LEC maturation.
During development, all LECs are thought to originate from embryonic veins, however multiple studies have suggested a myeloid origin for a subset of LECs. A relationship between myeloid cells and the pulmonary LECs has not been elucidated. Here, we used myeloid-specific inducible CSF1R-CreERtdTomato lineage tracing mice and identified rare, single cells that co-expressed CSF1R- CreERtdTomato and Prox1, the master lymphatic regulator, in the postnatal day 3 lung. This process was temporally restricted to the early postnatal period. Lineage tracing with additional myeloid-Cre mice (CSF1R-iCre and CX3CR1-Cre) also showed contribution to postnatal LECs. To determine the biological significance of CSF1R-derived LECs to postnatal lung biology, we performed conditional Prox1 loss of function experiments. CSF1R-CreER mediated deletion of Prox1 resulted in lymphatic hypoplasia, edematous foci and clotting. These findings suggest that early postnatal CSF1R+ progenitors contribute to the pulmonary lymphatic endothelium and that vascular clotting may result from lymphatic malformation/dysfunction. / 2021-06-14T00:00:00Z
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Investigating the role of microglia in neural development and synaptic maintenanceYeh, Hana 04 February 2022 (has links)
Maternal immune activation (MIA) disrupts the central innate immune system during a critical neurodevelopmental period. Microglia are the primary innate immune cells in the brain and can mediate neurodevelopment, but the direct influence of microglia on the MIA phenotype remains largely unknown. Here, we show that MIA can lead to long-lasting effects on microglial phenotype, neuronal circuitry, and behaviors. Transcriptomic analysis revealed aberrant expression of neurogenic genes in MIA microglia. We found that microglia repopulation by colony-stimulating factor receptor 1 (CSF1R) inhibition reversed MIA-induced social deficits and corrected expression of the newly identified MIA-associated neuritogenic molecules in microglia. In vitro whole-cell patch-clamp recording and immunohistochemistry revealed that microglia repopulation restored MIA-induced changes in intrinsic excitability, dendritic spine density, and microglia-neuron interactions of layer V intrinsically bursting pyramidal neurons in the prefrontal cortex. Maternal inflammation therefore alters microglial phenotypes and changes neuronal functions by mediating microglia-neuron interactions. We found that Wingless-related MMTV integration site 5a (WNT5a) is a critical regulator of this microglia-neuron communication. Studies have shown that the neurotrophic factor WNT5a plays a critical role in neurodevelopment, and here we demonstrate that WNT5a is one of the neuritogenic genes significantly upregulated in embryonic MIA microglia. We showed using microarray analysis that the microglial secretome can promote neural stem cell differentiation through various pathways, including Wnt pathways. Live imaging of neuron-microglia co-culture demonstrated that microglia enhanced neurite development and dendritic spine density and that this was diminished by microglial Wnt5a silencing using siRNA transfection. Multi-electrode array recordings revealed that microglia co-culture increased spontaneous neuronal firing rate. Thus, microglia can secrete WNT5a and regulate dendritic spine development, maintenance, and neural circuitry. These results indicate that altered expression of microglial WNT5a due to pathogenic states such as inflammation can lead to abnormal neuronal activity. To further elucidate microglia biology, we developed an inducible immortalized murine microglial cell line using a tetracycline expression system. The addition of doxycycline can induce rapid cell proliferation for the expansion of cell colonies. Upon withdrawal of doxycycline, this monoclonal microglial cell line can differentiate and resemble in vivo microglia physiology as assessed by expression of microglial genes, innate immune response, chemotaxis, and phagocytic capabilities. This cell line becomes a convenient and useful method to study microglia in vitro. / 2024-02-03T00:00:00Z
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Uncovering triggers of colonization in brain metastasisBlazquez, Raquel 24 January 2017 (has links)
No description available.
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Early Development of Resident Macrophages in the Mouse Cochlea Depends on Yolk Sac Hematopoiesis / マウス蝸牛における組織マクロファージの初期発達は卵黄嚢での造血に依存するKishimoto, Ippei 23 March 2020 (has links)
京都大学 / 0048 / 新制・課程博士 / 博士(医学) / 甲第22324号 / 医博第4565号 / 新制||医||1041(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 髙折 晃史, 教授 竹内 理, 教授 生田 宏一 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM
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The role of the fms-intronic regulatory element (FIRE) in macrophage developmentRojo Gutiérrez, Rocío Patricia January 2018 (has links)
Macrophages belong to the mononuclear phagocyte system and they perform fundamental roles to maintain homeostasis in the organism. Macrophage development, survival, proliferation and functionality depend upon the colony stimulating factor 1 (CSF1) and interleukin-34 (IL-34), which signal through the CSF1 receptor (CSF1R). CSF1R is a type III tyrosine kinase receptor that is present in the plasma membrane of monocytes and macrophages. Mutations in Csf1r in mice produce the loss of many tissue macrophage populations and multiple developmental abnormalities. In humans, abnormal enhancement of CSF1R expression has been correlated to adverse prognosis in a subset of carcinomas; and mutations in the human CSF1R are associated with an autosomal-dominant neurodegenerative disease. CSF1R is encoded by the c-fms proto-oncogene and its expression is partially controlled by the fms-intronic regulatory element (FIRE). The FIRE sequence is highly conserved across species and contains binding motifs for multiple transcription factors, which are relevant for haematopoiesis. Previous results from murine Csf1r transgenes showed that FIRE is essential for driving Csf1r expression, and that interactions between FIRE and multiple myeloid transcription factors contribute to maximal regulatory activity. This project aimed to study the role of FIRE in its normal chromatin context, in vivo. A FIRE knockout (FIRE-/-) mouse model was generated using the CRISPR/Cas9 technology in mouse embryonic stem cells (ESCs) and in mice. In ESCs, the deletion severely compromised the differentiation of macrophages from embryoid bodies generated in vitro. In mice, the frequency of the FIRE- /- genotype in the progeny does not follow a Mendelian distribution and about 5% of the offspring developed hydrocephalus. Unlike Csf1r -/-mice, which die before weaning, most surviving FIRE-/- mice grew normally and were fertile. The impact of the mutation on macrophage populations is selective. FIRE-/- mice are not monocyte deficient (identified as F4/80+ Csf1r+ cells in peripheral blood), although these cells have reduced levels of Csf1r mRNA and do not bind porcine CSF1 Fc fusion protein. The development of peritoneal macrophages and Iba-1+ microglia was abolished, but Adgre1+ (F4/80+) macrophage populations in liver and spleen were unaffected. Csf1r was greatly reduced in bone marrow progenitors, but about 30% of these cells were able to differentiate into macrophages in vitro, upon exposure to recombinant human CSF1 (rhCSF1). This study shows that FIRE is essential for the development of a subset of tissue-resident macrophage populations. In FIRE-/- mice, potential compensation from additional regulatory elements within Csf1r might underlie the development of unaffected tissue-resident macrophages.
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Funktionelle Charakterisierung linien-fremder Signalwege für Wachstum, Überleben und Reprogrammierung lymphatischer ZellenLamprecht, Björn 05 January 2011 (has links)
Cytokine steuern die Kommunikation von verschiedenen Zelltypen untereinander und regulieren deren Überleben, Differenzierung und Wachstum. Kommt es zu einer Deregulation der Expression von Cytokinen oder deren Rezeptoren, kann es zu autoimmunen oder malignen Erkrankungen kommen. Ein besonderes Beispiel der aberranten Cytokinexpression ist das klassische Hodgkin Lymphom. Die malignen Hodgkin/Reed-Sternberg (HRS) Zellen des Hodgkin Lymphoms stammen ursprünglich aus Keimzentrums B-Zellen ab, haben aber ihren B-Zell Phänotyp verloren. Des Weiteren exprimieren sie eine Vielzahl von verschiedenen Cytokinen und Cytokinrezeptoren, die ursprünglich nicht in einem Genexpressionsprogramm von B-Zellen vorkommen. In dieser Arbeit wurden zwei dieser Cytokin-Rezeptorsysteme (IL-21/IL-21R und CSF-1/CSF1R) hinsichtlich ihrer Funktionen für die HRS Zellen des Hodgkin Lymphoms charakterisiert. Die Expression des T-Zell assoziierten Cytokins IL-21 konnte in dieser Arbeit erstmals in HRS Zellen nachgewiesen werden. Für die Expression des myeloiden CSF1R zeigen Ergebnisse dieser Arbeit eine neuartige Regulation durch ein Long Terminal Repeat (LTR) Element, welche zu einem bis dahin unbekannten mRNA Transkript des Protoonkogens CSF1R in den HRS Zellen führt. Sowohl für IL-21 als auch für CSF1R konnte in der Doktorarbeit die Expression und Funktionalität des jeweilig korrespondierenden Rezeptors (IL-21R) bzw. Cytokins (CSF-1) nachgewiesen werden. Die Bedeutung dieser B-Zell fremden Gene für die HRS Zellen lag hauptsächlich in der Stimulation von Wachstum und Überleben und der Induktion von wichtigen Signalwegen (z.B. STAT3). Die Ergebnisse der Dissertation können als Ausgangspunkt für neue Strategien in der Diagnostik und der spezifischeren Therapie von Hodgkin Lymphom Patienten dienen. Der außergewöhnliche Mechanismus der Genregulation des CSF1R Gens über ein endogenes LTR Element kann in anderen Tumorentitäten ebenfalls ein Grund für die Aktivierung von Onkogenen sein. / Cytokines in the human body are responsible for cell-cell communication and regulate survival, differentiation and proliferation of different cell types. Deregulation of expression levels of cytokines might contribute to autoimmune diseases or tumor growth. One of the most prominent examples of aberrant cytokine expression is the classical Hodgkin Lymphoma. The malign Hodgkin/Reed-Sternberg (HRS) cells of classical Hodgkin Lymphoma are derived from germinal centre B cells, however they lost their B cell-specific phenotype. Moreover they express a huge variety of cytokines and cytokine receptors, normally not expressed in B cells. Two of these cytokine-receptor systems (IL-21/IL-21R and CSF-1/CSF1R) and their expression and function in HRS cells are subject of this dissertation. The expression of the T cell-associated cytokine IL-21 has been shown for the first time in HRS cells. The results for the myeloid-specific proto-oncogene CSF1R identified a unique, so far unknown mRNA transcript, expressed due to activation of a long terminal repeat (LTR) element. For both, IL-21 and CSF1R, the expression and functionality of the corresponding receptor (IL-21R) or cytokine (CSF-1), respectively, was demonstrated in this dissertation. Protection from apoptosis, proliferation and stimulation of several pathways are the main functional consequences of auto- and paracrine stimulation of HRS cells with either IL-21 or CSF-1. These results might lead to new diagnostic and more specific treatment strategies for Hodgkin Lymphoma patients. Regarding the unusual expression of CSF1R via LTR activation this mechanism might also be the reason for oncogene activation in several other tumor entities.
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