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Le but de notre étude était de mettre en place une méthode qui puisse nous permettre d’identifier, en aveugle, des perturbateurs de voies biologiques, et qui soit d’une part généralisable pour toute espèce de poissons et d’autre part applicable quel que soit le cours d’eau considéré. Nous nous sommes intéressés aux gènes différentiellement exprimés dans le foie, en utilisant la technologie du séquençage Illumina de banques ADNc. Nous avons étudié trois espèces de cyprinidae (C. nasus, P. toxostoma, S. cephalus) dans le bassin de la Durance, servant à l’alimentation en eau de plusieurs millions de personnes. Nous avons mis en place une suite logicielle pour inférer un transcriptome pour chacune des trois espèces étudiées, et effectué un travail en bioinformatique pour l’identification des spécimens hybrides. Cette méthode nous permet d’assigner les 596 millions de séquences générées (293 spécimens) à l’une des trois espèces et à 16606 gènes identifiés. Les résultats biologiques montrent des variations de l’expression de gènes touchant des voies biologiques associées à des réponses aux xénobiotiques le long de l’axe amont-aval de la rivière. Ils montrent aussi que les spécimens échantillonnés dans le canal EDF présentent des réponses atténuées aux xénobiotiques par rapport aux individus en rivière. Ce résultat peut s’expliquer par l’effet de dilution des polluants dans une masse d’eau plus importante. Cette étude met en évidence les capacités adaptatives des populations de poissons à court terme, via des modifications de l’expression des gènes à un ensemble de perturbateurs environnementaux. Ce travail permet d’envisager la mise en place d’un outil de gestion incontournable. / The aim of our study was to establish a method that allows the identification (in blind) of biologicalpathway disrupters, for all species of fish and applicable regardless of the watercourse considered. Wefocused on differentially expressed genes (and the biological pathways in which they act) in the liver,using the Illumina sequencing technology of cDNA libraries. We studied three species of cyprinidae (C.nasus, P. toxostoma, S. cephalus) in the Durance basin that constitutes water resource for several millionpeople. We have implemented a pipeline to infer the transcriptome for each of the three species studied,and developed a bioinformatics framework for the identification of hybrid specimens. This methodallows us to assign the 596 million sequences generated (representing 293 specimens) to one of the threespecies and to 16,606 identified genes. The biological results display variations in the expression of genesaffecting biological pathways associated with xenobiotic responses (estrogens, Hap, heavy metals) alongthe upstream-downstream axis of the river. They also yield that the specimens sampled in the EDFchannel displayed an attenuated responses to xenobiotics, in comparison to individuals that inhabitethe river, possibly a benefit of the dilution effect of pollutants in a larger body of water. This studyhighlights short-term adaptive capacities (acclimation) of fish populations to a set of environmentaldisrupters via changes in gene expression levels. It will open a way to an essential tool for managementpolicies.

Thesis (M.SC. (Aquaculture)) --University of Limpopo, 2011 / The present MSc dissertation emanates from seasonal surveys conducted by the fish parasitological group of the Department of Biodiversity and Aquaculture Research Unit of the University of Limpopo, Turfloop Campus. The first part of the present study was aimed at investigating the metazoan parasites of three cyprinids occurring in the Nwanedi-Luphephe Dams. The main purpose of it was to determine temporal changes in the intensity of infestation in terms of prevalence, mean intensity and abundance of parasite species parasitizing the cyprinids studied over a two year period. Ecological parameters including species host-specificity, seasonality, and gender preference and host size versus species intensity are discussed for each parasite. Altogether 152 specimens were examined for parasites and a total of 2 432 metazoan parasites of ten species were recorded. At the sampling site, all three hosts co-occurred, however, a substantial proportion of Barbus radiatus was collected from the perennial stream feeding one of the twindams. Fish were sampled by means of gill nets and electrofishing or seine netting in accordance with the habitat conditions. Hosts were killed and organs investigated for metazoan parasites. After collection of parasites, standard methods for processing individual parasites were followed. The results obtained revealed the following groups of parasites; monogeneans (ectoparasites) included Dactylogyrus spinicirrus, D. afrolongicornis afrolongicornis, D. afrolongicornis alberti, Afrodiplozoon polycotyleus, Gyrodactylus sp., and Dogielius sp. (all recorded from the gills); Crustacea, Dolops ranarum was found from the mouth cavity, gills and skin of Labeobarbus marequensis. Of these, only two specialists, both monogeneans, were found on Barbus trimaculatus namely, D. afrolongicornis afrolongicornis and D. afrolongicornis alberti. Based on morphology of the haptoral hard parts, these two species were almost similar to each other than to D. spinicirrus. The appreciable difference between D. afrolongicornis afrolongicornis and D. afrolongicornis alberti was mainly in the shape of the marginal bar. Both D. spinicirrus and A. polycotyleus were widely distributed and recorded on the gills of all hosts during all seasons. Both species were recorded for the first time on B. radiatus. Also, D. spinicirrus was recorded for the first time on the gills of B. trimaculatus. Based on comparison with the original material, the species could be identified to species level. These analyses provided sufficient evidence for restoration of Afrodiplozoon polycotyleus as a valid taxon. The existence of two species, Gyrodactylus sp. and Dogielius sp. were recorded for the first time on B. radiatus in South Africa, and this possibly represents new species. The endoparasites included the following groups: digeneans- Diplostomulum metacercariae from the eyes of Lb. marequensis, Ornithodiplostomum sp. and black spot (grubs) were recorded from B. trimaculatus. The latter was also recorded in the muscle of B. radiatus. Unidentified digenean cysts were recovered from the gills and in the body cavity of both Lb. marequensis and B. trimaculatus; nematodes were represented by Contracaecum larvae in the body cavity of both Lb. marequensis and B. trimaculatus; cestodes were represented by gryporynchid larvae from the intestine of B. radiatus. The general high prevalence and intensities of ectoparasites recorded is an indication that the Nwanedi-Luphephe Dams has a biotic mechanism which might have enabled it to sustain the growth rate of ectoparasite intra-population. There was no correlation between either fish length or condition factor and the number of parasites. The study indicated that the abundance of monogeneans is partly influenced by season and that of endoparasites was principally governed by the presence of intermediate hosts and definitive hosts. The second part of this dissertation dealt with the health status of Lb. marequensis. Fish health was assessed using condition-related indices including condition factor and a modified Health Assessment Index (HAI) and the associated Parasite Index (PI). The HAI was performed to determine and examine any macroscopic abnormalities regarding external features and internal organs. The purpose of combining the two indices was to use the infestation of the metazoan parasites found on and/or in Lb. marequensis to determine whether or not the environment they live in was healthy. Both indices together with the condition factor provided relatively simple and rapid indications of how well fish were coping in their environment. The HAI score varied amongst the four sampling seasons. The highest individual mean value was 63 in winter, followed by a score of 50 in autumn, while the lowest were 42 and 33 in summer and spring respectively. To authenticate the HAI and PI data, certain water quality variables were measured and are discussed in detail in this dissertation. The Nwanedi-Luphephe Dams are generally believed to have good water quality. This was supported in this study; conditions assessed in fish using the aforementioned indices did not differ greatly between seasons, nor did the conditions deviate appreciably from normality. The HAI values were low overall which signifies a healthy fish profile for the system. The present investigation showed the existence of differences in the occurrence of individual parasite to be linked to water temperature changes. Thus, seasonal changes do influence parasite developmental stages to a certain degree. Tested heavy and trace metals were within the permissible limits as provided by the Department of Water Affairs and Tourism (DWAF, 1996).

Vision plays a key role in life of many vertebrates, and the performance of visual system is often adapted to specific environments inhabited by individual species. Fish colonized a wide range of habitats and adjusted their visual abilities to maximize their success rates in hunting, reproduction and predator avoidance. This thesis is focused on molecular mechanism of visual system, namely on genes for photoreceptor proteins, opsins, of two major groups of teleost fishes: African riverine cichlids (family Cichlidae, order Cichliformes, part of larger taxa Percomorpha), and European freshwater cyprinids (family Cyprinidae, order Cypriniformes, part of larger taxa Ostariophysi). Two types of photoreceptor cells are present on retina: the cones and the rods. Actinopterygian fishes in general have four cone opsin types (SWS1, SWS2, RH2 and LWS) used for colour (photopic) vision, and one rod opsin type (rhodopsins) for vision in deteriorated light conditions (scotopic vision). In the present thesis, I focus on 1) DNA sequence and amino acid substitutions of the opsin genes, and on 2) gene expression levels of opsins sensitive to various wavelengths of light spectrum. The results of my work show that both cichlids (family Cichlidae) and cyprinids (family Cyprinidae) have a complete set of opsin genes in...

Patterns in 0+ fish distribution along longitudinal and depth profiles were studied in five canyon-shaped reservoirs in the Czech Republic. In two canyon-shaped and one shallow well-mixed reservoirs the efficiency of fry trawls was investigated during late summer for juveniles and in one canyon-shaped reservoir the efficiency of ichthyoplankton trawls was investigated during spring for larvae and early juveniles.

The need for more sustainable protein sources is growing globally due to the significant climate impact from the food system and the estimated population growth. Although vegetarian protein sources have been proven to be sustainable alternatives, there may exist additional resources that currently are not utilized but potentially could contribute as sustainable protein sources. Life Cycle Assessment (LCA) is an internationally standardized tool used to assess the potential environmental impacts of a product or service throughout its entire life cycle. The results from a recently conducted LCA for Swedish carp species showed that the average potential climate impact was 0.77 kg CO2-eq per kg of edible product, which is significantly lower than more commonly consumed protein sources. The bream is a carp fish that previously was consumed in Sweden, but now is caught only as a by-catch that is released back.  This study aims to assess the potential environmental impacts of minced bream produced in Stockholm and utilizing bream caught as by-catch to wild capture fishery in Mälaren. The study also investigates how the potential environmental impacts may change in alternative systems and how the potential climate impact compares to the potential climate impact of other protein sources consumed in Sweden. The results of the study confirm many of the conclusions made in reviewed literature, such as the wild capture fishery and transports being identified hotspots. The results also show a low potential environmental impact of the minced bream in the current system but significant increases in the potential environmental impacts if the minced bream was produced in the alternative systems. In comparison to other protein sources, the minced bream shows great potential, both now and in the future when the carbon budget may be limited to 0.5 kg CO2-eq per meal if we are to limit global warming to 1.5°Cabove pre-industrial levels.  Further studies are encouraged to collect more data and provide a better understanding of the environmental impacts of fish products. However, the results could function as an important benchmark that also highlights the potential of currently underutilized species of fish. / Behovet av mer hållbara proteinkällor ökar globalt till följd av matproduktionens stora klimatavtryck samt uppskattningar om en snabbt växande befolkning. Även om vegetariska proteinkällor har visats vara hållbara alternativ, finns en möjlighet att även andra resurser som i dagsläget inte utnyttjas har potential att bidra som hållbara proteinkällor. Livscykelanalys (LCA) är ett internationellt standardiserat verktyg som används för att utvärdera den potentiella miljöpåverkan från en produkt eller tjänst under hela livscykeln. En nyligen genomförd LCA visar att svenska karpfiskar har ett genomsnittligt potentiellt klimatavtryck på 0.77 kg CO2- ekvivalenter per kg ätlig produkt, vilket är avsevärt mycket lägre den potentiella klimatpåverkan hos många av de proteinkällor som idag konsumeras i större utsträckning. Braxen är en karpfisk som tidigare konsumerats i Sverige men som numera fångas enbart som en bifångst som släpps tillbaka.  Denna studie syftar till att utvärdera den potentiella miljöpåverkan av braxenfärs som produceras i Stockholm på braxen fångad som bifångst till gösfiske i Mälaren. Studien undersöker också hur den potentiella miljöpåverkan kan förändras i alternativa system och hur den potentiella klimatpåverkan kan jämföras med den potentiella klimatpåverkan från andra proteinkällor som konsumeras i Sverige. Resultaten från studien bekräftar många av slutsatserna i litteraturen som granskats, som att fisket och transporter identifierats som hotspots. Resultatet visar också en låg potentiell miljöpåverkan från braxenfärsen i det nuvarande systemet men en betydande ökning av den potentiella miljöpåverkan om braxenfärsen produceras i de alternativa systemen. Jämfört med andra proteinkällor visar braxenfärsen stor potential både nu och i framtiden när koldioxidbudgeten kan begränsas till 0.5 kg CO2-ekvivalenter per huvudmåltid om den globala uppvärmningen ska begränsas till 1.5 °Cöver förindustriella nivåer.  Ytterligare studier uppmuntras för att samla in mer data och ge en bättre förståelse för fiskprodukters miljöpåverkan. Resultatet kan dock fungera som ett viktigt riktmärke som också belyser potentialen hos för närvarande underutnyttjade fiskarter.

Migration occurs among many animal species for the purpose of, among other things, finding food or to reproduce. Spawning migration is a form of migration that occurs among many fish species where they move to another site for reproduction. The movement can be obstructed by migration barriers like road culverts. Barriers to migration pose one of the greatest threats to biodiversity and ecosystem functions in freshwater. They impair the connectivity of watercourses and may prevent fish from improving reproductive success or completing their life histories altogether. There are both benefits and costs with migration, benefits such as increased survival for the adults and offspring, and costs such as increased energy consumption and increased mortality. The costs are often dependent on the morphological traits of the individual, like body shape and size. In this study, the spawning migration of two species of fish of the family Cyprinidae, ide (Leuciscus idus) and roach (Rutilus rutilus) was investigated. Few studies have been made on ide or on roach compared to other cyprinids and salmonids. This study might therefore enhance the overall knowledge of these two species. The overall aims of this project are to study and compare phenotypic correlates of spawning migration behaviour of ide and roach. The field studies were performed in Oknebäcken, Mönsterås (SE632310-152985), Sweden in March and April 2020. To describe the watercourse and define the location and characteristics of different potential migration barriers, a simplified biotope mapping method was used. The fish were caught in a hoop net and then measured, weighted, sexed, and injected with passive integrated transponder using the bevel down method. In order to register in stream movement of fish, reading stations with antennas were placed, at two locations upstream from the marking station and one downstream at the estuary. The sex ratio differed from the expected 1:1 with a majority of females for both species. This might be a result of fluctuations in survival of spawn coupled with different age-at-maturity between sexes. We found that individuals that arrived early to the stream were larger for both study species, as other studies also reported. Also, male ide was both larger and arrived before female ide. There might be an energy cost associated with early arrival to the stream and therefore, larger individuals arrive first. For roach, there was no difference in arrival time between the sexes although female roach were larger. There was no difference in the time spent in the stream between the species. For ide, females stayed for a longer period of time in the stream than males. However, the opposite was true for roach. This may be because male roach might benefit from more fertilization events when staying longer. There might therefore be a trade-off between the energy cost in staying in the stream and the increased fitness advantage in fertilization events. We found no correlation between any of the morphological traits and migration distance. However, since very few individuals were registered at the upstream reading stations, there might be an effect of migration barriers on the spawning migration. The mortality after spawning was higher for roach than for ide. For ide, a larger proportion of females than males died. For roach, individuals that arrived early was classified as alive to a greater extent than those who arrived late. Both similarities and differences between the species were discovered in this study which concludes that even closely related species might differ substantially from each other.

<p>Месо шарана, најзаступљеније врсте рибе на рибњацима у<br />Републици Србији, али и других ципринидних врста, представља<br />значајан нутритивни извор n-3 високо незасићених масних киселина,<br />које имају важну улогу на здравље људи. У раду су испитани<br />фактори који делују на хемијски и маснокиселински састав меса<br />шарана и других ципринидних врста које се гаје на подручју Србије.<br />Установљено је да је садржај масти и маснокисeлински састав риба<br />су под утицајем врсте рибе, чак и када припадају истој фамилији,<br />различитих фактора животне средине, начина гајења, а посебно<br />начина исхране. Утврђен је значај добре технологије производње на<br />рибњаку за одговарајућу структуру планктонских и бентосних<br />организама, што игра велику улогу у добијању меса шарана, али и<br />других ципринидних врста, које се могу гајити у поликултури са<br />њим, доброг хемијског и маснокиселинског састава. Указано је на<br />значај који формулисане смеше имају у исхрани риба на њихово<br />здравствено стање, производне параметре и квалитет меса. Извршено<br />је испитивање замене компоненти анималног порекла са<br />алтернативним компонентама биљног порекла и добијени су<br />задовољавајући резултати у погледу производних перформанси и<br />умерених промена квалитета меса, када је у питању маснокиселински<br />ДВМ Драгана Љубојевић<br />Коришћење репичиног уља у исхрани шарана и лињака као фактора променa квалитета меса<br />iii<br />састав. Анализом седимента, воде у рибњацима, као и меса риба из<br />рибњака и отворених вода установљен је степен загађености животне<br />средине. Представљен је нови производ од меса шарана и других<br />ципринидних риба. По први пут је успостављена ћелијска култура<br />масног ткива шарана, која омогућава анализирање молекуларних и<br />биохемијских механизама који се не могу изучавати на живим<br />рибама, који настају као последица промена у исхрани.</p> / <p>Meso šarana, najzastupljenije vrste ribe na ribnjacima u<br />Republici Srbiji, ali i drugih ciprinidnih vrsta, predstavlja<br />značajan nutritivni izvor n-3 visoko nezasićenih masnih kiselina,<br />koje imaju važnu ulogu na zdravlje ljudi. U radu su ispitani<br />faktori koji deluju na hemijski i masnokiselinski sastav mesa<br />šarana i drugih ciprinidnih vrsta koje se gaje na području Srbije.<br />Ustanovljeno je da je sadržaj masti i masnokiselinski sastav riba<br />su pod uticajem vrste ribe, čak i kada pripadaju istoj familiji,<br />različitih faktora životne sredine, načina gajenja, a posebno<br />načina ishrane. Utvrđen je značaj dobre tehnologije proizvodnje na<br />ribnjaku za odgovarajuću strukturu planktonskih i bentosnih<br />organizama, što igra veliku ulogu u dobijanju mesa šarana, ali i<br />drugih ciprinidnih vrsta, koje se mogu gajiti u polikulturi sa<br />njim, dobrog hemijskog i masnokiselinskog sastava. Ukazano je na<br />značaj koji formulisane smeše imaju u ishrani riba na njihovo<br />zdravstveno stanje, proizvodne parametre i kvalitet mesa. Izvršeno<br />je ispitivanje zamene komponenti animalnog porekla sa<br />alternativnim komponentama biljnog porekla i dobijeni su<br />zadovoljavajući rezultati u pogledu proizvodnih performansi i<br />umerenih promena kvaliteta mesa, kada je u pitanju masnokiselinski<br />DVM Dragana LJubojević<br />Korišćenje repičinog ulja u ishrani šarana i linjaka kao faktora promena kvaliteta mesa<br />iii<br />sastav. Analizom sedimenta, vode u ribnjacima, kao i mesa riba iz<br />ribnjaka i otvorenih voda ustanovljen je stepen zagađenosti životne<br />sredine. Predstavljen je novi proizvod od mesa šarana i drugih<br />ciprinidnih riba. Po prvi put je uspostavljena ćelijska kultura<br />masnog tkiva šarana, koja omogućava analiziranje molekularnih i<br />biohemijskih mehanizama koji se ne mogu izučavati na živim<br />ribama, koji nastaju kao posledica promena u ishrani.</p> / <p>Meat of common carp, the most common fish species which is farmed in<br />the Republic of Serbia and meat of other cyprinid species, represent an<br />important nutritional source of n-3 highly unsaturated fatty acids, which<br />play an important role in human health. This paper examined the factors<br />that affect the chemical and fatty acid composition of carp and other<br />cyprinid species that are grown in Serbia. It was found that the fat content<br />and fatty acid composition of fish are influenced by fish species, even<br />when they belong to the same family, and also by different environmental<br />factors of cultivation, especially by diet. It was established the importance<br />of proper rearing technology in the pond for the appropriate structure of<br />planktonic and benthic organisms, which play a significant role in getting<br />carp meat, and meat of other cyprinid species that can be grown in<br />polyculture with carp of desirable chemical and fatty acid composition. It<br />was pointed out on the significance of formulated feed mixtures in fish<br />nutrition on fish health, production parameters and meat quality. An<br />investigation was done on replacing components of animal origin with<br />alternative components of plant origin and satisfactory results were<br />obtained in terms of production performance and moderate changes in the<br />quality of meat, regarding to fatty acid composition. The degree of<br />environmental pollution was established by analysis of sediment and<br />water in the ponds, and the flesh of fish from ponds and open water. The<br />new food product made from fish meat was presented. For the first time, it<br />was established cell cultures carp preadipocytes, which allows analysis of<br />the molecular and biochemical mechanisms that arise as a result of<br />ДВМ Драгана Љубојевић<br />&nbsp;</p>