The existence of new technologies, implemented in efficient platforms and workflows has made massive genotyping available to all fields of biology and medicine. Genetic analyses are no longer dominated by experimental work in laboratories, but rather the interpretation of the resulting data. When billions of data points representing thousands of individuals are available, efficient computational tools are required. The focus of this thesis is on developing models, methods and implementations for such tools. The first theme of the thesis is multi-dimensional scans for quantitative trait loci (QTL) in experimental crosses. By mating individuals from different lines, it is possible to gather data that can be used to pinpoint the genetic variation that influences specific traits to specific genome loci. However, it is natural to expect multiple genes influencing a single trait to interact. The thesis discusses model structure and model selection, giving new insight regarding under what conditions orthogonal models can be devised. The thesis also presents a new optimization method for efficiently and accurately locating QTL, and performing the permuted data searches needed for significance testing. This method has been implemented in a software package that can seamlessly perform the searches on grid computing infrastructures. The other theme in the thesis is the development of adapted optimization schemes for using hidden Markov models in tracing allele inheritance pathways, and specifically inferring haplotypes. The advances presented form the basis for more accurate and non-biased line origin probabilities in experimental crosses, especially multi-generational ones. We show that the new tools are able to reconstruct haplotypes and even genotypes in founder individuals and offspring alike, based on only unordered offspring genotypes. The tools can also handle larger populations than competing methods, resolving inheritance pathways and phase in much larger and more complex populations. Finally, the methods presented are also applicable to datasets where individual relationships are not known, which is frequently the case in human genetics studies. One immediate application for this would be improved accuracy for imputation of SNP markers within genome-wide association studies (GWAS). / eSSENCE

Background: Primary aldosteronism (PAL) has emerged as the commonest specifically treatable and potentially curable form of secondary hypertension. With its propensity towards cardiovascular complications above that expected from hypertension alone, PAL is a potentially highly detrimental state which should be detected as early as possible in the course of the disease and treated appropriately. The detection of earlier, milder, normokalaemic forms of PAL using the aldosterone/renin ratio (ARR) as a screening test has significantly enlarged the clinical spectrum of PAL and facilitated identification of a new familial variety (familial hyperaldosteronism type II, FH-II). Unlike familial hyperaldosteronism type I (FH-I), FH-II is not glucocorticoid remediable and is not caused by the CYP11B1/CYP11B2 “hybrid” gene mutation. The genetic defects underlying FH-II have not yet been elucidated and hence, detection of FH-II still involves complicated and time-consuming biochemical screening by ARR testing and confirmation by carefully performed suppression testing such as fludrocortisone suppression testing. Diagnosing PAL by currently available biochemical methods is tedious. Finding a simple and reliable genetic test for FH-II which could be applied to all members of a family with known FH-II and also to apparently sporadic PAL would simplify patient management. A genome-wide search has already demonstrated linkage of FH-II to chromosome 7p22, consistent with this locus harbouring the causative gene/s for FH-II. Three candidate genes [retinoblastoma-associated Kruppel-associated box gene (RBaK, involved in tumorigenesis and cell cycle control), postmeiotic segregation increased 2 (PMS2, involved in DNA mismatch repair and tumour predisposition) and guanine nucleotide-binding protein alpha-12 (GNA12, a transforming oncogene)] within this linked locus have been examined in an attempt to find the causative mutations for FH-II, but no clear causative mutations have so far been found. PAL continues to be a challenging yet rewarding disease to manage. Although much has been learnt about PAL, there are still many areas which have not been explored. PAL considered due to bilateral autonomous production of aldosterone is usually treated medically because unilateral adrenalectomy has been considered ineffective. Since medical treatment may cause adverse effects or fail to control hypertension, defining the role of unilateral adrenalectomy in bilateral PAL is an important clinical issue, but quality outcome data are lacking. The candidate therefore peformed a retrospective study of the efficacy of unilateral adrenalectomy in patients with bilateral PAL. In patients with unilateral PAL, unilateral laparoscopic adrenalectomy has been shown to correct hypokalaemia and lead to cure or improvement in hypertension control. While most studies have focused on clinical and biochemical outcomes, to the candidate’s knowledge, there are no data on the effects of adrenalectomy on quality of life (QOL). Assessing the QOL in patients with unilateral PAL before and after unilateral laparoscopic adrenalectomy (which cured hypokalaemia in all and hypertension in the majority) provided an insight into the degree to which the disease process and/or its treatment affects the life of an individual with PAL. Aims: The overall aims of this thesis were to further explore the genetic basis of FH-II, to examine the role of adrenalectomy in patients with bilateral PAL and the effects of unilateral adrenalectomy on QOL in unilateral PAL as a first step in dissecting out the effects of medical and surgical treatment on QOL in the more common bilateral PAL. In order to address the overall aims, the specific aims of the thesis were (1) to narrow the linked region at 7p22 by phenotyping and genotyping additional FH-II families from Italy, using more closely spaced microsatellite markers at 7p22, and then assess the combined multipoint logarithm of odds (LOD) score for these Italian as well as two Australian and one South American families; (2) to sequence candidate genes in the narrowed linked region for FH-II associated mutations; (3) to assess the role of unilateral adrenalectomy in bilateral PAL and identify predictive parameters; and (4) to assess the quality of life following unilateral adrenalectomy in patients with unilateral PAL. Methods and Results: Two Italian families with FH-II were genotyped using seven closely spaced microsatellite markers at 7p22. All known affected individuals from each of the two Italian families were found to share identical haplotypes for the seven markers, consistent with linkage of the disease locus with the 7p22 region. The multipoint LOD score of the now five known families with FH-II which demonstrate linkage at 7p22, calculated using MERLIN linkage analysis was highly significant at 5.22. Three candidate genes in this linked region were then examined for mutations causing FH-II; the replication protein A 3 (RPA3), zinc finger protein 12 (ZNF12) and glucocorticoid induced transcripts 1 (GLCCI1) genes were selected as they are involved in cell cycle control, and adrenal hyperplasia and adenomas are common in FH-II. Using the method of polymerase chain reaction-sequencing, coding regions, splice sites, proximal promoter, 5’ and 3’ untranslated regions (UTR) were sequenced in affected and unaffected subjects from the 7p22-linked FH-II families. Identified single nucleotide polymorphisms (SNPs) were genotyped to assess significance. For RPA3, four different SNPs were initially found to segregate with the affectation status, that is, they were present in the two affected and not the two unaffected subjects from the largest Australian family (family 1, eight affecteds) with FH-II. However, only two SNPs (rs2024374 G/C and rs17169194 T/G) were further genotyped as that they were in functionally important positions of the gene (that is, in regulatory regions within the promoter and 5’ UTR) and because of the relatively low allele frequency reported in the literature for these two SNPs in controls. Further genotyping of these SNPs was carried out in another six affecteds and four unaffecteds from the same family and a complete segregation of these two SNPs with affectation status was seen in family 1. The G/C mutation rs2024374 in the RPA3 promoter results in the loss of three transcription factor binding sites and creation of one new site. The factors for which the binding sites in the RPA3 promoter and 5’UTR were altered by these two SNPs were involved in regulation of cell differentiation, proliferation and apoptosis. Hence, it is possible that altered activity of the RPA3 promoter and 5’UTR in family 1 could result in predisposition to adrenal hyperplasia or neoplasia, altered ARR and/or hypertension. Genotyping of these SNPs was then carried out in another two pedigrees (families 2 and 3) that showed linkage to 7p22, and in 75 normotensive, non-PAL control subjects. However, neither of these two SNPs segregated with the affectation status in family 2 and 3, and they were present in 30% and 20% of controls, respectively. For ZNF12 and GLCCI1, no evidence of causative mutations was found in the coding regions, splice sites, proximal promoter region and proximal 5’ and 3’ UTR. Between 1984 and 2004, 51 of 684 patients diagnosed with bilateral PAL underwent unilateral adrenalectomy. Forty patients fulfilled the inclusion criteria and were followed for at least 12 (median 56.4) months. Hypertension was cured in 15% and improved in 20%, usually within one year of unilateral adrenalectomy. The proportion with controlled hypertension was significantly (p<0.001) higher after adrenalectomy (65%) than before (25%). Mean systolic (p<0.001) and diastolic (p<0.001) blood pressure, left ventricular mass index (p<0.05) and aldosterone/renin ratio (p<0.001) fell. Serum creatinine independently predicted hypertension cure. From 2007 through 2008, QOL was evaluated prospectively using the internationally validated SF-36 questionnaire before and 3 and 6 months post-operatively in 22 patients [14 males, 8 females; mean age 50.0 ± 2.0 (range 27-69) years] with unilateral PAL who underwent adrenalectomy within the Endocrine Hypertension Centre, Greenslopes and Princess Alexandra Hospitals. Pre-operatively, the SF36 score for each QOL domain was lower for PAL patients than reported for the Australian general population, significantly so for physical functioning (p<0.05), role physical (p<0.001), vitality (p<0.001) and general health (p<0.05). Compared with pre-adrenalectomy, there were significant increments in mean scores at 3 months for physical functioning (p<0.05), role physical (p<0.05), general health (p<0.001), role emotional (p<0.05), social functioning (p<0.05), mental health (p<0.001) and vitality (p<0.001); and at 6 months for physical functioning (p<0.05), role physical (p<0.05), general health (p<0.05), role emotional (p<0.05), mental health (p<0.05) and vitality (p<0.001). Mean SBP and DBP improved significantly (p<0.001), with 86% of these patients cured (BP≤140/90, no drugs) and the remaining 14 % improved. Mean plasma potassium (p<0.001) and renin concentration rose (p<0.01), whereas mean upright plasma aldosterone (p<0.001), aldosterone/renin ratio (p<0.001) and number of antihypertensive agents fell (p<0.001). Conclusion: In the Italian families with FH-II available for study, work by the candidate included in this thesis confirmed linkage of FH-II to chromosome 7p22. The combined multipoint LOD score of 5.22 for the five families showing linkage at 7p22 was highly significant. Linkage to 7p22 in Italian families with FH-II extends the previous positive findings to a third geographical area, bringing greater certainty regarding the importance of this locus in identifying causative mutations. Although no clear causative mutations were found in the three 7p22 candidate genes examined, it is conceivable that the rs2024374 G/C and/or rs17169194 T/G SNPs in RPA3 could act in conjunction with another 7p22 mutation in family 1, resulting in the FH-II phenotype. Examination of the outcome of unilateral adrenalectomy in patients with bilateral PAL suggests that this surgical approach can be beneficial in certain carefully selected patients and should not be automatically excluded as a treatment option. Unilateral adrenalectomy in patients with unilateral PAL has positive impacts not only on clinical and biochemical parameters but also on QOL. The findings of this thesis provide new insights into the genetic basis and therapeutic options and treatment outcomes of PAL and further highlight its importance as a common, genetically based, specifically treatable and potentially curable cause of hypertension and cardiovascular disease. It also points the way to potentially very useful studies in future by exploring longer term effects of unilateral laparoscopic adrenalectomy as treatment for PAL on QOL, to compare unilateral adrenalectomy in those with unilateral versus bilateral PAL, and to compare surgery with specific medical treatment.

[Truncated abstract] The primary aims of this thesis were to investigate health indicators of child maltreatment, as well as pathways into the child protection system using routinely collected government databases, enabling a preventative health approach to child abuse and neglect. This thesis aims to improve understanding of the trends in child maltreatment and the factors, at the child and family level, which increase or reduce vulnerability to child maltreatment so more effective prevention policies and practices can be developed. This project uses longitudinal de-identified population data from the Western Australian Government Departments of Child Protection, Health and Disability Services. These data contained information on demographic, clinical, social and child protection outcomes of children and their families. Record linkage of administrative data was undertaken to: investigate health indicators of abuse and neglect using Hospital Morbidity data to enable the monitoring of population trends in abuse and neglect; compare proportion of cases obtained using health indicators with the Department of Child Protection data, and describe the physical, psychological and social characteristics of abused and/or neglected children and families. Statistical techniques utilised include logistic and Cox regression to investigate risk of adverse child outcomes, taking into account potential confounding and time to event. The main findings include: There has been an increase in assault and maltreatment related hospital admissions over the last 25 years. ... There has been a marked increase in the birth prevalence of Neonatal Withdrawal Syndrome (NWS) in Western Australia over the last 25 years, from 1 per 10,000 live births in 1980, to 31 per 10,000 live births in 2005. Specific maternal characteristics associated with having a child with NWS are identified and these children have an increased risk of child protection involvement. A population level analysis of child and parental factors determined the estimated increase in risk of substantiated child maltreatment for child intellectual disability, parental admissions for mental health, substance use, and assault, as well as greater socio-economic disadvantage. Conclusions This is the first body of research which has extensively used longitudinal, population level linked health and child protection data to investigate health indicators of child abuse and neglect and antecedent causal pathways. Monitoring injuries and conditions associated with child abuse and neglect in routinely collected data and using multiple sources of ascertainment are important initiatives in child maltreatment surveillance. Health indicators of child abuse and neglect are not subject to the same definitional and policy issues as child protection data and therefore provide a more valid comparison over time and between jurisdictions. The identification of factors which increase vulnerability for children and families to child maltreatment is essential in the implementation of prevention strategies including universal public health approaches as well as the identification of at-risk families for targeted intervention.

Pedestrian movement is unconstrained. For this reason it is not amenable to mathematical modelling in the same way as road trac. Individual pedestrians are notoriously difficult to monitor at a microscopic level. This has led to a lack of primary data that can be used to develop reliable models. Although video surveillance is cheap to install and operate, video data is extremely expensive to process for this purpose. An alternative approach is to use passive infrared detectors that are able to track individuals unobtrusively. This thesis describesthe use of a low cost infrared sensor for use in tracking pedestrians. The sensor itself, manufactured by a British company, is designed to count people crossing an arbitrary datum line. However, with the development of additional software, the functionality of these sensors can be extended beyond their original design specication. This allows the trajectories of individual pedestrians to be tracked. Although the field of view of each sensor is relatively small (44 m), five were deployed in a busy indoor corridor, covering most of its length. In this research, the technical challenges involved in using the sensors in this way are addressed. Statistics derived from the data collected are then compared to other studies at this scale.

Effective linkage to HIV care and treatment for all people diagnosed with HIV is crucial if positive treatment outcomes are to be realised. The study used the client records for all those newly diagnosed with HIV through the two entry points for HIV testing between January 2016 and December 2016. The aim of the study was to determine the proportions between the linkages to HIV care and treatment as per entry point for the people diagnosed with HIV at a Norton Health Centre in Zimbabwe. More importantly, the study sought to make recommendations to improve linkage per entry point. This was achieved through determining the proportion of individuals diagnosed with HIV that had documented evidence of linkage to HIV care and treatment by entry point. The study also evaluated the association between the entry point of HIV diagnosis and the linkage to HIV care and treatment.. In total, 239 clients’ records were reviewed who were over the age of 16 years. Overall, 144 (60%) had documented evidence of being linked to HIV care while about 95 (40%) of the client records had no documented evidence of linkage to HIV care. 143(60%) had documented evidence of initiation on antiretroviral therapy (ART) while about 96 (40%) had no documented evidence of initiation on ART. A statistically significant association between entry point for HIV diagnosis and the linkage to HIV care and treatment was demonstrated. A statistically significant higher proportion of females was demonstrated to be linked to HIV care and treatment than for males. The Prevention of Mother to Child Transmission of HIV (PMTCT) entry point showed higher linkages than OPD and wards entry point. Therefore, there is need to make put measures in place that encourage all clients that are diagnosed with HIV through the various entry points at the health centre to be linked to HIV care and treatment. The study made recommendations based on the findings. It is also recommended that male partners be encouraged to accompany their female expectant partners when attending PMTCT sessions. Youth were found to be lower in terms of linkages and the youth user friendly centre is recommended so as to attract more youths to come for testing. / Health Studies / M.A. (Public Health)

Les protéoglycanes sont des macromolécules composées de glycosaminoglycanes (GAGs), liés de manière covalente à une protéine porteuse. Les GAGs sont impliqués dans de nombreux processus biologiques, comme la croissance et la prolifération des cellules, et également dans de nombreuses pathologies, incluant l’arthrose, la maladie d’Alzheimer et des cancers. Leur biosynthèse fait intervenir des O-glycosyltransférases et commence par la formation de la zone de liaison tétrasaccharidique. Celle-ci initie la formation de deux types de chaînes de GAGs, les héparines / sulfates d’héparine avec l’action de l’EXTL3 et les sulfates de chondroïtines ou de dermatanes avec l’action de la CSGalNAcT-1. Dans cette biosynthèse, la zone de liaison peut être sulfatée mais le rôle de ces sulfatations est encore peu connu.L’objectif de ce travail était de synthétiser des disaccharides de la zone de liaison ainsi que les trisaccharides de transfert, avec le premier sucre aminé des chaînes de GAGs, diversement monosulfatés ou non, dans le but de comprendre le rôle de ces sulfatations sur les enzymes de bifurcation.Différentes méthodes d’activation, micro-ondes et chimie en flux continu, ont également été testées pour sulfater des mono-, di- et trisaccharides. / Proteoglycans are macromolecules composed of glycosaminoglycans chains (GAGs) covalently linked to a core protein. GAGs are implicated in many biological processes, such as cells growth and proliferation, and they are also involved in several diseases including osteoarthritis, Alzheimer’s disease and cancers. Their biosynthesis involves the action of O-glycosyltransferases and starts with the formation of a tetrasaccharidic linkage region. This GAGs linkage region initiates the formation of two types of GAGs chains, heparin/heparan sulfates with the action of EXTL3 and chondroitin sulfates/dermatan sulfates with the action of CSGalNAcT-1. In this biosynthesis, the linkage region may be sulfated, but the role of these sulfations is still poorly understood.The objective of this work was to synthetize disaccharides of the linkage region and transfer trisaccharides, with the first aminosugar of the GAGs chains, variously monosulfated or not, in order to study the role of sulfations on the bifurcation enzymes.Different activation methods, microwaves and flow chemistry, were also tested to sulfate mono-, di- and trisaccharides.

As consequências do uso de substâncias psicoativas na saúde da população mundial são questões de preocupação - a maioria dos problemas dos usuários continua sendo a falta de acesso ao tratamento. Estudos longitudinais buscam identificar desfechos de recaída, mas são de alto custo. Como alternativa, estudos epidemiológicos com bases de dados secundários têm sido implementados em todo o mundo utilizando técnicas de record linkage. No Brasil, tem havido aumento do uso de registros médicos; porém, há pouca literatura sobre seu uso para seguimento de pacientes psiquiátricos, especialmente para estudos sobre usuários de drogas. Há muitos sistemas de informação na área de saúde pública sem um identificador único que possa ser utilizado para localizar um paciente em múltiplas bases de dados, condição de aplicação prática para o uso da técnica. O objetivo desse estudo foi o de produzir informações com base em dados secundários para mapear a trajetória dos usuários de crack na rede de atenção à saúde, utilizando metodologia de record linkage para o seguimento dos pacientes após sua alta hospitalar. Para isso, foi realizada a análise dos dados de atendimento disponibilizados pelos sistemas de informação em saúde pública para identificar a viabilidade de produzir informação para o seguimento dos usuários de crack na rede de atenção à saúde após a sua alta hospitalar. Com a impossibilidade de realizar esse seguimento com os dados disponíveis, a metodologia de record linkage probabilístico foi utilizada para rastrear as hospitalizações de usuários de crack e a continuidade de seu tratamento ambulatorial para estudo de seguimento desses usuários. A parcela da informação pública disponível pelos Sistemas de Informação em Saúde, não permitiu o acompanhamento de usuários entre os dispositivos de atendimento da rede de atenção. Utilizando uma amostra de 293 pacientes em tratamento para o uso de crack em duas instituições foi utilizada a metodologia e localizados 217 pacientes nos dados de internação hospitalar e 180 na base de atendimento ambulatorial; 55% foram identificados como pares verdadeiros na primeira base, enquanto apenas 12% na base de atendimento ambulatorial. Entre os dados hospitalares e ambulatoriais, demonstrou-se que dentre os usuários que realizam tratamento hospitalar, apenas 10 foram atendidos na rede ambulatorial, nesse período. Produzir informação para mapear a trajetória de usuários de crack utilizando as bases de dados dos sistemas de informação em saúde é possível por meio da metodologia de record linkage, como alternativa aos estudos longitudinais desta população de difícil acesso. Este estudo tem especial importância, pois pode contribuir também para a avaliação de programas de tratamento, por meio de indicadores de reinternação, tempos de permanência, curva de sobrevida e outros. A informação é fundamental para a implantação dos modelos de gestão que garantam as intervenções necessárias aos usuários com transtornos por uso de substâncias, especialmente no caso dos usuários de crack. / The consequences of use of psychotropic substances on the world population’s health are a matter of concern – most of the problems faced by users is still related to the lack of access to treatment. Longitudinal studies seek to identify these outcomes, but they are expensive. Alternatively, epidemiological studies based on secondary data have been applied worldwide, using record linkage methods. In Brazil, there has been an increase in the use of medical records. However, literature on its use for the follow-up of psychiatric patients, especially for studies on drug users is scarce. In the public health area, there are several information systems without an identification field that enable the location of a patient in multiple databases – which is one of the practical applications of the record linkage technique. The aim of this study was to produce information based on secondary data for mapping crack users pathway in the public healthcare network based on data linkage method, to follow them up after hospital discharge. For this, analysis of public health information systems was conducted to identify the feasibility of producing information for the follow-up of crack users in the network of health care. With the inability to conduct follow-up with the available data, the probabilistic record linkage methodology was used for tracing out crack users hospitalizations and the continuity of outpatient treatment after their discharge. The available public information from National Information Systems does not allow follow-up of patients of the health system across healthcare services, neither the monitoring of the continuation of treatment within the healthcare network. In a sample of 293 patients in treatment for crack use in two hospitals of Porto Alegre/RS; 217 patients were located in hospital admission data and 180 in the outpatient care database; 55% were identified as exact matches in the first database, whereas the outpatient database provided only 12%. Data from both hospital and outpatient care revealed that, among patients who received hospital treatment, only 10 attended outpatient care during the studied period. To produce information to track patient´s pathway is possible by record linkage method as an alternative to longitudinal studies of hard to reach populations. This study is particularly relevant, because it can also contribute to the evaluation of treatment programs, by means of indicators of rehospitalization, length of stay, survival rate etc. The formulation of public policies requires evidences based on information that, up to now, has not been adequately used, particularly that produced by existing Health Information Systems. Information is crucial for the implementation of administration models able to guarantee the necessary care to individuals with disorders resulting from drug use, especially in cases of crack users.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Um estudo sugere que o fenótipo da periodontite agressiva localizada está ligado a região 1q25. O objetivo do presente estudo foi aperfeiçoar o mapeamento genético da periodontite agressiva na região cromossômica supracitada em famílias clinicamente bem caracterizadas segregando a doença. A hipótese deste estudo é que variações genéticas localizadas no cromossomo 1 entre as regiões 1q 24.2 e 1q 31.3 contribuem para o fenótipo da periodontite agressiva. Como objetivos específicos, determinamos o modo de herança da periodontite agressiva através de análise de segregação, e verificamos a existência de ligação e/ou associação entre a região 1q 24.2-1q 31.3 e a periodontite agressiva. A análise de segregação foi executada no programa SEGREG do pacote SAGE versão 5.4.2 com base nos dados dos pedigrees das primeiras 74 famílias recrutadas neste estudo, totalizando 475 indivíduos (média de 6.4 indivíduos por família) de origem geográfica similar. Assumiu-se a herança Mendeliana como um locus autossômico com 2 alelos A e B, onde o alelo A estava associado ao fenótipo relevante. Cinco modos de transmissão (não homogêneo, Mendeliano homogêneo, homogêneo geral, semigeral, heterogêneo geral) foram testados assumindo que a prevalência da periodontite agressiva é de 1% sob o Equilíbrio de Hardy-Weinberg. Foram coletadas amostras de saliva de 54 das 74 famílias recrutadas, totalizando 371 amostras de saliva para a extração do DNA genômico. 21 polimorfismos de um único nucleotídeo (SNPs) foram selecionados dentro da região proposta e analisados por reação em cadeia da polimerase (PCR). Os genótipos foram obtidos pelo método TaqMan. A análise não paramétrica de ligação familial foi executada com o Programa Merlin. As detecções de transmissão (associação) foram executadas com os programas FBAT e PLINK. O modo de herança mais adequado para cada teste de susceptibilidade dos alelos executado foi o modelo semigeral (p=0,31). Este modelo de transmissão sugere que os alelos de risco para a periodontite agressiva são transmitidos pelos pais heterozigotos, fornecendo suporte para a hipótese que variantes genéticas exercem um papel importante na patogênese da periodontite agressiva e que poucos loci com efeitos relativamente pequenos contribuem para a doença, independente da interação com fatores ambientais. Os resultados mostram uma associação estatisticamente significante entre os SNPs rs1935881 (G>A) e rs1342913 (A>G) localizados no gene FAM5C e a periodontite agressiva (p=0,03). O sequenciamento das regiões codificantes de FAM5C não apresentaram mutação, mas foram encontradas duas mutações em íntrons do gene FAM5C próximas aos SNPs rs57694932 (A>G) e rs10494634 (A>T). Estas variantes não estão associadas a periodontite agressiva nesta população. Por outro lado, o haplótipo rs1935881-rs1342913 está associado a periodontite agressiva (p=0,009). Os resultados deste estudo suportam a hipótese de que o gene FAM5C contido na região 1q 24.2 a 1q 31.3 contribui para a etiopatogenia da periodontite agressiva e, portanto, pode ser sugerido como gene candidato. / It has been suggested that the localized aggressive periodontitis phenotype is linked to the region 1q25. The aim of this study was to fine map the chromosome interval suggested as containing a localized aggressive periodontitis locus in clinically well characterized group of families segregating aggressive periodontitis. The hypothesis of this study is that genetic variation located between 1q24.2 to 1q31.3 contributes to the phenotype of aggressive periodontitis. As specific aims, we evaluated the inheritance mode of aggressive periodontitis performing segregation analysis and, we tested the presence of linkage and or association between the target region of chromosome 1 and aggressive periodontitis. Segregation analysis was performed in pedigree data from the first 74 families, comprised of 475 individuals (average of 6.4 individuals per family) with similar geographic origin by the use of the SEGREG program of SAGE v.5.4.2. Mendelian inheritance was assumed to be through an autosomal locus with two alleles A and B, where the A allele was associated with the relevant phenotype. Five inheritance modes (homogeneous no transmission, homogeneous Mendelian transmission, homogeneous general transmission, semi-general transmission, heterogeneous general transmission) were tested assuming the prevalence of aggressive periodontitis as 1% and no deviations from Hardy-Weinberg equilibrium. Saliva samples were collected from 54 families, 371 individuals and DNA was extracted from this biological material. Twenty-one single nucleotide polymorphisms (SNPs) were selected and analyzed by standard polymerase chain reaction. The genotypes were obtained by the TaqMan method. The non-parametric analysis of familial linkage was performed with Merlin software. Analyses of transmission detection (association) were performed by FBAT and PLINK programs. The most parsimonious mode of inheritance in each susceptibility type tested was the semi-general transmission mode (p=0,31). This mode suggests an excess of risk alleles being transmitted from heterozygous parents. This result provides strong support for the hypothesis that genetic factors play a role in aggressive periodontitis and that a few loci, each with relatively small effects, contribute to aggressive periodontitis, with or without interaction with environmental factors. We found a statistically significant association between the SNPs rs1935881 (G>A) and rs1342913 (A>G) in the FAM5C gene and aggressive periodontitis (p=0.03). Sequence analysis of FAM5C coding regions did not disclose any mutations, but two variants in intronic regions of FAM5C gene: rs57694932 (A>G) and rs10494634 (A>T) were found. The two variants are not associated with aggressive periodontitis in this population. A stronger association could has seen between aggressive periodontitis and the haplotypes rs1935881-rs1342913 (p=0.009). This study supports the hypothesis that FAM5C gene might contribute to aggressive periodontitis and then, could be suggested as a candidate gene.

Ce travail de thèse s’inscrit dans l’étude des matériaux moléculaires photo-commutables. L’objectif est le contrôle réversible et persistant des propriétés physiques de la matière par application d’un stimulus externe, tel qu’une excitation optique. Le travail de thèse est constitué de deux parties principales. La première partie traite de la photo-isomérisation des ligands NO dans les complexes de ruthénium di-nitrosyle. Une démarche expérimentale systématique a été effectuée sur trois complexes. La spectroscopie infrarouge et la diffraction des rayons-X ont été utilisées conjointement à basse température. De multiples isomères de liaison photo-induits (PLI) ont été détectés. Il a été montré qu’il est possible de photo-commuter chacun des deux ligands nitrosyles indépendamment. De plus, une double photo-isomérisation a été caractérisée. La deuxième partie présente le développement et la mise en œuvre d’une expérience de diffraction des rayons-X résolue en temps en laboratoire. Le dispositif est un diffractomètre prototype avec un détecteur à pixel hybride XPAD, permettant des mesures à l’échelle de la milliseconde. Un système pompe-sonde est couplé au diffractomètre permettant une excitation périodique de l’échantillon et une caractérisation in-situ de la photo-commutation. Cette expérience a été validée par la mesure de l’état métastable MSII du complexe nitrosyle Na2[Fe(CN)5NO].2H2O, d’une durée de vie de 12 ms à 150 K / This work is part of the study of photo-switchable molecular materials. The objective is the reversible and persistent control of the physical properties of matter by the application of an external stimulus, such as optical excitation. The thesis work consists of two main parts. The first part deals with the photoisomerization of NO ligands in ruthenium di-nitrosyl complexes. A systematic experimental approach was performed on three complexes. Infrared spectroscopy and X-ray diffraction were used together at low temperature. Multiple photoinduced linkage isomers (PLI) were detected. It has been shown that it is possible to photo-switch each of the two nitrosyl ligands independently. In addition, a double photoisomerization was characterized. The second part presents the development and implementation of an in-house time-resolved X-ray diffraction experiment. The device is a prototype diffractometer with a XPAD hybrid pixel detector, allowing measurements on a millisecond time-scale. A pump-probe system is coupled to the diffractometer allowing periodic excitation of the sample and an in-situ characterization of the photo-switching. This experiment was validated by measuring the metastable state MSII of the nitrosyl complex Na2[Fe(CN)5NO].2H2O, with a lifetime of 12 ms at 150 K

Mimer les processus biologiques par des méthodes s'affranchissant de la nécessité d'activation enzymatique est un défi pour la communauté des chimistes. Parmi ces processus nous nous sommes intéressés à la ligation et la polymérisation d'acides nucléiques. Les procédés chimiques existants nécessitent généralement l'emploi d'un activateur et conduisent en majorité à des jonctions internucléosidiques irréversibles, incompatibles avec les systèmes vivants. Pour réaliser la ligation et la polymérisation réversibles d'ADN en l'absence d'activation chimique ou enzymatique, nous avons utilisé des oligonucléotides modifiés par une fonction acide boronique qui a la propriété de se lier de manière covalente et réversible avec des fonctions cis 1,2 diol.Un analogue de la thymidine fonctionnalisé par un acide boronique a ainsi été synthétisé et incorporé à l'extrémité 5' d'un oligonucléotide. En présence d'une matrice et d'un partenaire 3' diol, une jonction boronate peut alors être obtenue. L'influence de la nature des fonctions à l'extrémité 3' du partenaire a été étudiée afin de déterminer les paramètres gouvernant la ligation et a notamment conduit à la formation d'une jonction oxazaborolidine en présence d'un partenaire aminoalcool. Par ailleurs, cette méthodologie a été appliquée à des processus visant à mimer la polymérisation par la formation de multiples jonctions boronates entre des oligonucléotides bifonctionnalisés par un acide boronique et un diol. Enfin l'auto polymérisation d'un duplexe en l'absence de matrice a été évaluée. / Mimicry of biological processes by non enzymatic ways is a challenge for chemists. Among those processes, we have been focusing on the ligation and polymerization of nucleic acids. Reported chemical methods usually require an activator and lead mostly to irreversible internucleosidic linkage which are incompatible with living systems. To perform DNA ligation and polymerization under enzyme free and activator free conditions, we used modified oligonucleotides bearing a boronic acid function able to bind covalently and reversibly cis 1,2 diols.Thus, a thymidine analog functionalized by a boronic acid was synthesized and introduced at the 5' end of an oligonucleotide. In the presence of a template and a 3 end diol partner, a boronate junction can be obtained. Influence of the nature of functions at the 3' end of the partner have been studied to indentify the parameters governing the ligation and allowed the formation of an internucleosidic oxazaborolidine linkage with an aminoalcohol partner. In addition, this methodology has been applied to polymerization mimicking processes by the formation of multiple boronate junctions between bifunctionnal oligonucleotides bearing a boronic acid and a diol. Finally we evaluated the auto polymerization of a duplex in the absence of template.