Effective conservation strategies for imperiled species require an understanding of processes that influence fitness throughout the organism's life cycle and across the range of habitats needed to complete that cycle. I evaluated factors that affect population viability of bull trout Salvelinus confluentus, a threatened freshwater char species, throughout individual life stages and over the entire life cycle. I assessed the relationship between bull trout egg incubation success and environmental variables. Egg survival was negatively related to the percent of fine sediment in redds and positively related to hydraulic conductivity and the strength of downwelling. Next, I quantified juvenile bull trout survival rates and described movement patterns for this life stage. Juvenile bull trout emigrated from natal headwaters into larger rivers throughout the entire year and across a range of sizes. Estimates of juvenile survival rates improved dramatically when emigration was incorporated into the analysis. I integrated my observations of bull trout survival, growth, and movement to create a life-cycle model, which I used to better understand how populations respond to changes in specific demographic rates. Bull trout populations were particularly sensitive to changes in juvenile growth and survival. The relative effect of changes to fertility rates and adult survival varied depending upon whether a population was composed primarily of large, migratory, or smaller, resident individuals. Dispersal helped to lower the probability of extinction for small or declining populations when neighboring populations were stable. My research demonstrates that bull trout require access to habitats throughout entire watersheds to maintain population viability. My results suggest that limiting anthropogenic sources of fine sediment and maintaining areas of channel complexity that promote downwelling can be important for bull trout embryo survival. Management decisions should also consider the diverse behavior of juvenile bull trout and the wide range of habitat they use. Additionally, connectivity between populations is likely to be important for declining populations to persist. The diversity of life-history strategies expressed by bull trout helps maintain demographic stability within and among populations. As such, preservation of habitat integrity and full life-history diversity is imperative for conservation and recovery of bull trout populations range-wide.

Sailfish, Istiophorus platypterus, are commonly taken by the recreational and commercial fisheries in the Gulf of Mexico (Gulf) and larvae are frequently reported in the region, indicating the Gulf's potential role as spawning and/or nursery ground of sailfish. Five ichthyoplankton surveys were conducted in shelf and slope waters of the northern Gulf during the summers of 2005 (May, July, September) and 2006 (June, August). Surveys were conducted off the Texas and Louisiana coasts from 27 - 28N and 88 - 94W. During the two year study, 2,426 sailfish larvae were collected, ranging in size from 2.0 - 24.3 mm standard length (SL). Sailfish larvae were collected in 45.0% of collections with a peak density ranging of 51.5 larvae per 1000 m-2 of water sampled, and the highest larval abundances were observed within frontal features of the Loop Current. Sagittal otoliths were extracted from 1,236 larvae, and otolith microstructure analysis indicated sailfish ranged in age from 5 - 25 days post-hatch. Hatch-date distributions indicated fish were from early May to mid September spawning and/or hatching events. Instantaneous growth coefficients (g) ranged from 0.113 to 0.127 with intra- and inter-annual variations in growth observed. Growth coefficients correspond to a 10.7 - 11.9% increase in length per day. Instantaneous daily mortality rates (Z) were estimated from regressions of the decline in loge-transformed abundance on age and ranged from 20.4% to 29.2% per day suggesting large losses during the early life interval. Instantaneous weight-specific growth coefficients (G) ranged from 41.5% to 45.9% per day and were indexed to daily mortality to assess intra- and inter-annual variation in recruitment potential. Recruitment indices > 1.0 were observed during all surveys, suggesting cohort biomass was increasing and that conditions were favorable for growth, survival and recruitment. The results of this study indicate that the northern Gulf represents viable spawning and nursery habitat of sailfish and the sustainability of Atlantic sailfish populations may be linked to spawning in the Gulf.

A high degree of physical functioning is necessary for independently performing the numerous routine and valued tasks of daily life. Poor functioning not only hinders independent living, it can lower the quality of life, impede full social participation, and elevate the risk of death. However, not all adults are at equal risk of poor functioning: women experience worse functioning and live a greater number of years functionally impaired compared with men. Studies of this gap have focused on inequities in adult circumstances, such as socioeconomic status, but have generally fallen short of fully accounting for it. Recasting this research within a life-course, epidemiological framework points to the potential role of early-life circumstances. Early-life circumstances may impart a biological imprint, and they may also launch long-term trajectories of social circumstances, that could differentially shape functioning for men and women. Thus, this dissertation examines the life course origins of the gender gap in functioning and active life expectancy among older U.S. adults using two nationally-representative datasets: the National Survey of Midlife Development in the United States and the Health and Retirement Study. In sum, the findings reveal that: (a) a host of early-life circumstances, such as parents’ education levels, leave an indelible stamp on functional ability and active life expectancy for women and men, irrespective of adult circumstances, (b) while some early-life adversities, such as extreme poverty, were marginally more consequential for women’s than men’s functioning, they appear to be primarily more consequential for precipitating metabolic conditions such as diabetes and obesity rather than directly impacting functioning, (c) explanations of the gap must incorporate endogenous biological differences between men and women; explanations that focus exclusively on socially-structured inequities are insufficient, and (d) exposures to socioeconomic resources accumulate across the life course to shape functioning differently for men than women; particularly between white men, who enjoy better functioning with higher educational attainment irrespective of early-life socioeconomic exposures, and white women whose functioning gains plateau if they experienced early-life socioeconomic adversities. Overall, the results underscore the importance of a life course perspective in explicating gender disparities in functioning, longevity, and active life expectancy. / text

Various organic compounds, including graphitic carbon, can be formed abiotically in hydrothermal systems, such that evidence for early life must necessarily combine geological, morphological and geochemical data to be compelling. Carbonaceous materials (CM) have been isolated from three rock packages of mid to early Archaean age from the Pilbara Craton of Western Australia. This CM has been subjected to a multidisciplinary approach utilising a variety of analytical and observational techniques, in an attempt to establish the occurrence, associations, mineral affinities, historical environments of growth, and the metamorphic/thermal history experienced by what may be some of the earliest, relatively pristine record of 3500 million year old life on this planet. CM isolated from drillcore obtained from the first of these localities, the 3.24 Ga Sulphur Springs volcanic hosted massive sulphide (VHMS) deposit, occurs as isotopically light (δ13C values of −34.0 ‰ to −26.8 δ13C) finely striated, lenticular to banded material emplaced parallel to original sedimentary bedding planes within the fine-grained silicified epiclastic hanging wall sediments. Petrological and transmission electron microscopy (TEM) observations have revealed well-preserved bundles of filamentous and tubular structured microbial remains closely resembling both modern-day and more ancient microbial forms documented from sea floor hydrothermal environments. Total organic carbon (TOC) has a range of <1.0 to 2.3 %, while the thermal maturity (%Ro) of the filamentous bundles points to maximum temperatures since deposition of around 90–100 °C, a factor that has enabled the preservation of their morphology. These results are suggestive of a well-developed Archaean sediment-hosted microbial community, situated within a basinal environment associated with an active centre of seafloor hydrothermal activity. The majority of the CM isolated from drillcore samples of the second locality, the 3.46 Ga Salgash Subgroup, a lower member of the Apex Basalt, also appears as in situ, bedding parallel bands intercalated with foliated altered argillaceous sandstone beds. TOC of the samples ranges from 1.25 to 11.48 %, while carbon content varies from 2.05 to 32.17 %. δ13C results are relatively heavy, varying from -30.4 to -22.5 ‰. Thermal maturity indicators of 10-13 %Ro suggest the CM having been subjected to temperatures greater than normally obtained from processes associated with burial. Electron paramagnetic resonance (EPR) results showed this CM in a highly ordered graphitic state. Optically, the graphite lacks the typical pronounced anisotropy characterising graphites in metamorphic terranes. Graphitisation therefore, is likely the result of rapid heating at very high temperature. HRTEM of this material revealed an extremely high level of molecular ordering contemporaneous with the presence of the C60 fullerene molecules within carbon nanotubes. These forms are a key to the distinction between biologically and abiotically synthesized CM, both by their small size and their resistance to thermal degradation. The occurrence of these carbon forms in terrestrial deposits is rare, and usually associated with wildfires, lighting strike or meteoritic impact. In the case of the Salgash CM, the formation of these molecules and the isotropic graphitised state of the CM is interpreted as a result of emplacement under pressure of very high temperature (komatiitic/ peridotite) lavas. The thermal overprint of the CM by such a high temperature process resulted in the volatilisation of the organic material, destruction of any primary biological morphology and the subsequent reorganisation of the residual CM, resulting in increased molecular ordering. In the third part of the study, CM isolated from drillcore samples of the ca. 3.5 Ga Dresser Formation bedded black chert-barite units, occurs in both dispersed and layered forms, interlayered with fine-grained silica. The intimate association of the CM and silica strongly resembles silicified microbial colonies from active hydrothermal systems, which have been previously proposed as analogues of Archaean hydrothermal sites. Isotopically light δ13C values from -38.2 to -32.1 ‰, and the association of C, H, and N, are highly indicative of a biological origin for the material. Palaeotemperatures calculated from δ18O isotope analysis of quartz chips indicate a depositional temperature for the hydrothermal veins ranging from ~120 °C to ~200 °C. 207Pb-206Pb isotope analyses conducted on pyrites extracted from the interbedded barite units reveal a dual MORB and Erosion mix source for the Pb, which gives an average 207Pb/206Pb age of 3531±42 Ma for the deposit. Ro measurements reveal four distinct CM populations, defined as ACM, A1CM, BCM, and CCM, which represent temperatures ranging from 170 °C to potentially >400 °C. TEM and HRTEM observations of the lower temperature CM population show morphological entities strongly suggestive of microbial remains, including possible cell wall remnants. Higher Ro rank CM commonly fills or coats mineral grains and lacks distinguishable structures, which is consistent with an increased thermal degradation /hydrothermal overprint. The geological setting and mineralogy of the Dresser Formation endorse its formational history as a silica-barite dominated seafloor hydrothermal deposit, most likely analogous to modern “white smokers”. The occurrence of the predominant CM (type ACM) in more or less continuous bands and laminae within the sedimentary rocks suggest an in situ, syndepositional source for the majority of this material, whereas the dispersed nature of type BCM particles indicates a recycled nature. The occurrence of type CCM within fluid inclusions gives an insight into the primary morphology of the non-degraded original microbial cells that may have existed at that time. These observations, combined with the carbon isotopic heterogeneity and fractionations are suggestive of chemosynthetic microbes occupying a seafloor hydrothermal system where rapid silicification at relatively low temperature preserved the CM. Finally, in an effort to further understand the CM structures observed in the rocks of the Dresser Formation in the context of present day microbial colonies in similar environments, a comparative morphological study was conducted using a potential modern analogue derived from an active seafloor hydrothermal environment. Such methodology utilises the standard classification used in biological species identification, which is initially based on visual identification of specific features, whether by the naked eye, light microscopy or electron microscopy. The extant hyperthermophilic microbe Methanocaldococcus jannaschii was cultured under conditions similar to the Archaean seafloor, simulating an increased thermal maturity by artificially induced autoclaving at 100 °C (1 atm) and 132 °C (2 atm). A striking resemblance to the early Archaean forms observed in the Dresser CM was evident in both wall structure and thermal degradation mode of the cultured microbe. Cell disintegration of the cultures occurred at 100 °C marking the limits of life, whereas complete disintegration, deformation and shrinkage of the cells occurred at 132 °C. These comparative observations present as a feasible way of understanding the structural features in CM identified in Archaean sedimentary packages.

Rehabilitation of sturgeon populations requires an understanding of sturgeon autecology during all life stages, especially during early life when high mortality occurs. To begin to understand sturgeon early-life history I determined river of origin on a multi-basin scale (i.e., potential rivers of origin). I then determined habitat needs and early life demographics on a more localized scale (i.e., specific river). Trace elements differ between river reaches of the central US and may be used to determine origin of age-0 sturgeon. My trace element analyses suggested that age-0 sturgeon captured in the Middle Mississippi River, which extends from the confluence of the Missouri River downstream to the confluence of the Ohio River, drifted from as far upstream as the Gavins Point Dam on the Missouri River (> 1200 km), while other individuals originated locally in the Middle Mississippi River. On a more refined scale of habitats, I used trawling to identify habitat features used. Age-0 Scaphirhynchus sturgeon catch rates were highest around artificial structures (i.e., wing dikes) and island areas while main channel habitat comprised the lowest catch rates. Within these habitats, young sturgeon frequently occupied low velocities (i.e., ~0.1), moderate depths (i.e., 2 to 5 m), and sand substrate. Although determination of river of origin and specific habitats used are imperative for restoration, sturgeon populations are likely regulated by factors within habitats that affect early-life dynamics. Mean sturgeon growth rates ranged from 1.42-1.50 mm/d over the four years but did not differ among years. Individuals hatched over a 25 to 50-d period and peak hatch dates were between 10- 20 May during all years. Hatching coincided with optimum spawning temperatures of 17-20oC and a rise in river stage. Abundance was positively related to river stage, with longer durations of high water related increasing abundance. Mortality of age-0 sturgeon increased with the number of days where water temperature exceeded 28 oC. In the end this study has set benchmarks for understanding factors affecting the early-life ecology of Scaphirhynchus sturgeon.

Early experience critically shapes cognitive, affective, and behavioral development, and experiences of early life stress (ELS) have been documented to negatively impact developmental trajectories. An increasing need exists for innovative intervention development to ameliorate negative impacts of ELS. Translational neuroscience approaches hold promise for addressing the needs of individuals who have experienced ELS through the development and testing of targeted intervention strategies grounded in neuroscientific knowledge. The current dissertation work employed a translational neuroscience approach to improve inhibitory control (IC) in a group of adolescents (N=20) exposed to a range of ELS via a brief, computerized training paradigm. Baseline analyses of the association between ELS and IC revealed a positive relationship (i.e., increased ELS, increased IC performance), counter to hypotheses. The IC training did not significantly improve IC in the training group compared to the control group over time, contrary to hypotheses and previous work demonstrating the effectiveness of this IC training in young adults. Transfer of training effects to a non-trained IC task and to real-world risk-taking behavior were limited. ELS demonstrated some moderation of neural effects of IC training. The use of neuroimaging in this dissertation work allowed for further investigation of neural mechanisms even in the absence of significant behavioral training, transfer, and moderation effects. Results are discussed in the context of the utility of such IC training approaches for adolescents with ELS exposure and of translational neuroscience approaches more broadly. Future directions for IC training, translational neuroscience intervention approaches, and the incorporation of neuroimaging in this work are explored. This dissertation includes unpublished co-authored material. / 10000-01-01

Early life stress (ELS) affects the developing brain and impacts capacity for self-regulation and risk for psychopathology. The high spatial resolution of functional magnetic resonance imaging (fMRI) confers an advantage for studying specific neural regions posited to link ELS with subsequent functioning. The first chapter in this dissertation reviews the literature establishing the feasibility and utility of fMRI research with infants and young children. This chapter examines methodological issues and outlines the potential for this technique to make unique contributions to understanding how ELS influences brain development. The next two chapters present results from a study that employed a functional activation paradigm and resting state functional connectivity MRI (rs-fcMRI) to examine associations between a common source of ELS, non-physical interparental conflict, and neural functioning during infancy. The functional activation paradigm focused on emotional tone of voice as a stimulus relevant to interparental conflict, which is likely salient to infants. Higher levels of interparental conflict (as reported by mothers) were associated with infants (6 to 12 months of age) showing greater reactivity to very angry versus neutral tone of voice in neural regions associated with processing and regulation of stress and emotion (hypothalamus and rostral anterior cingulate cortex). The rs-fcMRI analysis examined coordinated neural functioning in the absence of stimuli, focusing on the amygdala as a key region for understanding the impact of ELS and the posterior cingulate cortex as part of a group of regions that show higher levels of activity in the absence of stimuli (the default network). The results replicate previous work characterizing the default network in infants and provide novel evidence for the functional connectivity of the amydgala and amygdala subregions during infancy. Interparental conflict was associated with variation in the connectivity of both regions. Thus levels of interparental conflict were associated with neural reactivity to a stressor-relevant stimulus and with patterns of coordinated neural functioning in the absence of such stimuli. These results provide support for the utility of using fMRI with infants to examine early emerging associations between common forms of ELS and brain functioning. This dissertation includes previously published and co-authored material. / 2016-10-17

D’après le dernier rapport du groupe d'experts intergouvernemental sur l'évolution du climat (GIEC), le réchauffement climatique devrait se poursuivre au cours du siècle prochain. La température atmosphérique moyenne pourrait augmenter de 0,3°C à 4,8°C avec des valeurs extrêmes allant de 1°C à 6°C en 2100. Ces changements de température auront des conséquences directes et indirectes sur l’ensemble de la biodiversité et plus particulièrement sur les poissons qui sont des animaux poïkilothermes. Dans cette étude, trois espèces ont été choisies en prenant en compte leur stratégie de reproduction et leur différence de tolérance thermique : la truite commune (Salmo trutta), le brochet (Esox lucius) et la carpe commune (Cyprinus carpio). Nous avons, pour chacune des trois espèces, appliqué les mêmes différences de température par rapport à leur température de référence (-4, -2, Tref, +2, +4°C) et étudié les effets sur la survie et le développement des embryons et des larves au cours de l’ensemble de la période d’alimentation endogène. Ce travail a confirmé la loi générale de l’impact de la température sur la période d’incubation (Q10 ~3). La truite commune montre une forte diminution de sa survie lors d’une augmentation de quatre degrés, néanmoins les larves survivantes sont plus grandes et ont un contenu énergétique plus important. La survie des larves de brochet augmente avec la température, ces larves sont les plus grandes et leur contenu énergétique est plus important à la température la plus élevée. La survie de la carpe n’est pas affectée par la température ; néanmoins les larves élevées à basse température sont les plus petites et présentent un faible contenu énergétique. Les résultats de survie pour les premiers stades de vie sont en concordance avec les modélisations des aires de répartition actuelle. Dans le futur, la prise en compte de la niche thermique théorique des premiers stades de vie pourrait permettre d’affiner les prévisions des aires de répartition / According to the latest report of the Intergovernmental Panel on Climate Change (IPCC), global warming is expected to continue over the next century, the average temperature could increase by 0.3 ° C to 4.8 ° C with extreme values ranging from 1 ° C to 6 ° C by 2100. These temperature changes will have direct and indirect consequences on the overall biodiversity and specifically fish which are poikilotherms. In this study three species were selected taking into account their reproductive strategy and their thermal tolerance: brown trout (Salmo trutta), pike (Esox lucius) and common carp (Cyprinus carpio). We have applied for all three species the same temperature range of from their referential temperature (-4, -2, Tref °C, +2, + 4 ° C). To carry out this study, we investigated biological traits related to survival and development during the endogenous feeding period. This work confirmed the general law of the impact of temperature during incubation phase (Q10 ~ 3). For brown trout, the results show a collapse of its population with an increase of four degrees; nevertheless surviving larvae were the longest and had a more energetic content. The survival rate of pike larvae increased when temperature increased, these larvae were the longest and the had more energetic content. The survival of the carp was not affected by temperature; nevertheless, at the lowest temperature (16°C), the larvae were smaller and had a lower energetic content. The survival results for the early stages of life are an agreement with the current distribution models. In view of this study the theoretical thermal niche species of early live stage should be undertaken to continue to refine prediction models from range

abstract: Evidence from the 20th century demonstrated that early life stress (ELS) produces long lasting neuroendocrine and behavioral effects related to an increased vulnerability towards psychiatric illnesses such as major depressive disorder, post-traumatic stress disorder, schizophrenia, and substance use disorder. Substance use disorders (SUDs) are complex neurological and behavioral psychiatric illnesses. The development, maintenance, and relapse of SUDs involve multiple brain systems and are affected by many variables, including socio-economic and genetic factors. Pre-clinical studies demonstrate that ELS affects many of the same systems, such as the reward circuitry and executive function involved with addiction-like behaviors. Previous research has focused on cocaine, ethanol, opiates, and amphetamine, while few studies have investigated ELS and methamphetamine (METH) vulnerability. METH is a highly addictive psychostimulant that when abused, has deleterious effects on the user and society. However, a critical unanswered question remains; how do early life experiences modulate both neural systems and behavior in adulthood? The emerging field of neuroepigenetics provides a potential answer to this question. Methyl CpG binding protein 2 (MeCP2), an epigenetic tag, has emerged as one possible mediator between initial drug use and the transition to addiction. Additionally, there are various neural systems that undergo long lasting epigenetics changes after ELS, such as the response of the hypothalamo-pituitary-adrenal (HPA) axis to stressors. Despite this, little attention has been given to the interactions between ELS, epigenetics, and addiction vulnerability. The studies described herein investigated the effects of ELS on METH self-administration (SA) in adult male rats. Next, we investigated the effects of ELS and METH SA on MeCP2 expression in the nucleus accumbens and dorsal striatum. Additionally, we investigated the effects of virally-mediated knockdown of MeCP2 expression in the nucleus accumbens core on METH SA, motivation to obtain METH under conditions of increasing behavioral demand, and reinstatement of METH-seeking in rats with and without a history of ELS. The results of these studies provide insights into potential epigenetic mechanisms by which ELS can produce an increased vulnerability to addiction in adulthood. Moreover, these studies shed light on possible novel molecular targets for treating addiction in individuals with a history of ELS. / Dissertation/Thesis / Doctoral Dissertation Psychology 2015

abstract: The maternal separation (MS) paradigm is an animal model of early life stress. Animals subjected to MS during the first two weeks of life display altered behavioral and neuroendocrinological stress responses as adults. MS also produces altered responsiveness to and self-administration (SA) of various drugs of abuse including cocaine, ethanol, opioids, and amphetamine. Methamphetamine (METH) causes great harm to both the individual user and to society; yet, no studies have examined the effects of MS on METH SA. This study was performed to examine the effects of MS on the acquisition of METH SA, extinction, and reinstatement of METH-seeking behavior in adulthood. Given the known influence of early life stress and drug exposure on epigenetic processes, group differences in levels of the epigenetic marker methyl CpG binding protein 2 (MeCP2) in the nucleus accumbens (NAc) core were also investigated. Long-Evans pups and dams were separated on postnatal days (PND) 2-14 for either 180 (MS180) or 15 min (MS15). Male offspring were allowed to acquire METH SA (0.05 mg/kg/infusion) in 15 2-hr daily sessions starting at PND67, followed by extinction training and cue-induced reinstatement of METH-seeking behavior. Rats were then assessed for MeCP2 levels in the NAc core by immunohistochemistry. The MS180 group self-administered significantly more METH and acquired SA earlier than the MS15 group. No group differences in extinction or cue-induced reinstatement were observed. MS15 rats had significantly elevated MeCP2-immunoreactive cells in the NAc core as compared to MS180 rats. Together, these data suggest that MS has lasting influences on METH SA as well as epigenetic processes in the brain reward circuitry. / Dissertation/Thesis / M.A. Psychology 2013