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To capture the underlying chemistry and physics of a system on electronic structure platform, it is necessary to accurately describe the intermolecular interactions such as repulsion, polarization, hydrogen bonding, and van der Waals interactions. Among these interactions, van der Waals (dispersion) interactions are weak in nature as compare to covalent bonds and hydrogen bonding, but it is physically and chemically very important in accurately predicting condensed phase properties such as Vapor liquid equilibria. This presents a significant challenge in modeling VLE using a first principles approach. However, recent developments in dispersion corrected (DFT-D3) and nonlocal density functionals can model dispersion interactions with reasonable accuracy. Here, we will present some of results that quantify efficacy of recent density functionals in predicting phase equilibria of molecular systems via first principle Monte Carlo (FPMC) simulations. Our aim is to assess the performance of several density functional by determining VLE, critical properties, dimer potential energy curves, vibrational spectra, and structural properties. The functional used in our study includes PBE-D3, BLYP-D3, rVV10, PBE0- D3, and M062X-D3. In addition, we have used the second order Møller-Plesset perturbation theory (MP2) method for computing density of argon at single temperature. The organic compounds considered for this study involves argon, CO2, SO2, and various hydroflurocarbons (R14, R134a, CF3H, CF2H2, CFH3) molecules. Additionally, the development of new materials, ionic liquids, and modification of industrial processes are an ongoing effort by researchers to efficiently capture acidic gases. Our ability to model these sorption processes using a first principles approach can have significant impact in speeding up the discovery process. In our work, we have predicted CO2 solubility in triethyl(butyl)phosphonium ionic liquid via FPMC simulations. Our results reveal the infrared spectra, structural and transport properties for pure ionic liquid and its mixture with CO2 through ab initio molecular dynamics simulations.

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The intent of this thesis is to develop ordinary differential equation models to better understand the mosquito population. We first develop a framework model, where we determine the condition under which a natural mosquito population can persist in the environment. Wolbachia is a bacterium which limits the replication of viruses inside the mosquito which it infects. As a result, infecting a mosquito population with Wolbachia can decrease the transmission of viral mosquito-borne diseases, such as dengue. We develop another ODE model to investigate the invasion of Wolbachia in a mosquito population. In a biologically feasible situation, we determine three coexisting equilibria: a stable Wolbachia-free equilibrium, an unstable coexistence equilibrium, and a complete invasion equilibrium. We establish the conditions under which a population of Wolbachia infected mosquitoes may persist in the environment via the next generation number and determine when a natural mosquito population may experience a complete invasion of Wolbachia.

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京都大学 / 新制・課程博士 / 博士(農学) / 甲第23241号 / 農博第2448号 / 新制||農||1084(附属図書館) / 学位論文||R3||N5331(農学部図書室) / 京都大学大学院農学研究科生物資源経済学専攻 / (主査)准教授 三谷 羊平, 教授 伊藤 順一, 教授 梅津 千恵子 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DGAM

Hydrothermal processes play a major role in transporting mass and energy in Earth’s crust. These processes rely on hydrothermal fluid, which is dissolving, transporting and precipitating minerals and distribute heat. The composition of the hydrothermal fluid is specific for various geological settings, but in most cases it can be approximated by H₂O-NaCl-CO₂ fluid composition. The flow of hydrothermal fluid is controlled by differences in temperature, pressure and/or density of the fluid and hydraulic conductivity of the rock. In my work, I was focused on modeling of the hydrothermal fluid properties and experimental characterization of fluid that formed emerald deposit in North Carolina, USA. The dissertation based on the result of three separate projects. The first project has been dedicated to characterization of the H₂O-NaCl hydrothermal fluid ability to transport mass and energy. This ability of the fluid is defined by a change in fluid density and enthalpy in response to changing pressure or temperature. In this project we quantified the derivatives of mass, enthalpy and SiO₂ solubility in wide range of pressure, temperature and composition (PTx) of H₂O-NaCl fluid. Our study indicated that the PT region in which fluid is most efficiently can transport mass and energy, located in the critical region near liquid-vapor phase boundary and the sensitivity to changing pressure-temperature conditions decrease with increasing salinity. In second project we developed the revised H₂O-NaCl viscosity model. Revised model to calculate the viscosity of H₂O-NaCl reproduces experimental data with ±10% precision in PTx range where experimental data available and follows expected trends outside of the range. This model is valid over the temperature range from the H₂O solidus (~0 °C) to ~1,000 °C, from ~0.1 MPa to ≤500 MPa, and for salinities from 0-100 wt.% NaCl. The third project has been focused on the characterization of formation conditions of the emerald at North American Emerald Mine, Hiddenite, North Carolina, USA. The emerald formation conditions defined as 120-220 MPa, 450-625 °C using stable isotope, Raman spectrometry, and fluid inclusion analysis. Hydrothermal fluid had a composition of CO2-H2O±CH4, which indicates mildly reducing environment of emerald growth. / Ph. D.