Microphytobenthos (MPB) generally dominates total autotrophic biomass in temporarily open/closed estuaries (TOCEs) of South Africa. A comparative study of MPB biomass was undertaken in two KwaZulu-Natal TOCEs, the Mdloti and the Mhlanga. Both estuaries receive different volumes of treated sewage waters. The Mdloti receives 8 ML.d-1, while the Mhlanga receives 20 ML.d-1, resulting in a capping flow of 0.092 and 0.23 m3.s-1, respectively. Through these effluents, eutrophication is enhanced and periods of mouth opening are also increased and prolonged, particularly at the Mhlanga. The aim of this study was to investigate fluctuations in MPB biomass in the Mdloti and the Mhlanga systems, with emphasis on freshwater flow and the alternation of closed and open phases. Sediment samples for MPB biomass were collected on a monthly basis, between March 2002 and March 2003, in the lower (mouth), middle, and upper (head) reaches of the two estuaries. MPB biomass ranged from 1.33 to 391 mg chI a m-2 and from 1.7 to 313 mg chI a m-2 in the Mdloti and the Mhlanga, respectively. A I-way ANOVA revealed no significant differences in MPB chI a concentrations between the two estuaries for the entire data set (Fl, 76 =1.48, P > 0.05). At the Mdloti, MPB biomass varied considerably, with values ranging from 1.33 to 131 mg chI a m-2 during the open phase, and from 18 to 391 mg chI a m-2 during the closed phase. A Mann-Whitney U test confirmed the high significance of these differences between open and closed phases (U= 29, P < 0.001). At the Mhlanga, MPB biomass ranged from 7.0 to 313 mg chI a m-2 during the open phase, and from 1.7 to 267 mg chI a m-2 during the closed phase. Unlike what was observed at the Mdloti, the higher MPB values at the Mhlanga were not always associated with the closed mouth state. In relation to key physico-chemical and biological factors, grazing pressure exerted by the zooplankton community appeared to have played a major role in controlling MPB biomass. Zooplankton biomass was consistently and positively correlated to MPB biomass throughout the study period both at the Mdloti (r = 0040, P < 0.001) and at the Mhlanga (r = 0.33, p < 0.05). Unlike what was shown in previous studies, light attenuation was not significantly correlated with MPB biomass during the period ofthe study, either at the Mdloti or the Mhlanga. These results show that the opening and closing of the mouth play a key role on the MPB biomass of both estuaries. The Mdloti seems to function as a typical TOCE, with prolonged open and closed phases. The Mhlanga, on the other hand, lacks a prolonged closed phase. This, in turn, affects its entire trophic structure and functioning. / Thesis (M.Sc.)-University of KwaZulu- Natal, 2004.

The largest known marine diamond placer, the Namibian mega-placer, lies along the Atlantic coast of south-western Africa from the Orange River mouth 1,000 km northwards to the Namibian-Angolan border. The most economically viable portion of the Namibian mega-placer (>75 million carats recovered at >95% gem quality) comprises onshore and offshore marine deposits that are developed within ∼100km of the Orange River outfall. For much of the Cainozoic, this long-lived fluvial system has been the main conduit transporting diamonds from kimberlitic and secondary sources in the cratonic hinterland of southern Africa to the Atlantic shelf that has been neutrally buoyant over this period. Highly energetic marine processes, driven in part, by southerly winds with an attendant northward-directed longshore drift, have generated terminal placers that are preserved both onshore and offshore. This study, through detailed field sedimentological and diamond analyses, investigates the development and mineralisation of gravel barrier deposits within the ancestral Orange River mouth area during a major ∼30 m regional transgression ('30 m Package') in the Late Pliocene. At that time, diamond supply from this fluvial conduit was minimal, yet the corresponding onshore marine deposits to the north of the Orange River mouth were significantly diamond enriched, enabling large-scale alluvial diamond mining to take place for over 75 years. Of the entire coastline of south-western Africa, the most complete accumulation of the '30 m Package' is preserved within the palaeo-Orange River mouth as barrier spit and barrier beach deposits. Arranged vertically and laterally in a 16m thick succession, these are deposits of: (1) intertidal beach, (2) lagoon and washover, (3) tidal inlet and spit recurve and (4) storm-dominated subtidal settings. These were parts of larger barrier features, the bulk of which are preserved as highstand deposits that are diamond-bearing with varying, but generally low grades (<13 stones (diamonds) per hundred tons, spht). Intertidal beach and spit recurve deposits have higher economic grades (12-13 spht) due to the energetic sieving and mobile trapping mechanisms associated with their emplacement. In contrast, the less reworked and more sandy subtidal, tidal inlet and washover deposits have un-economic grades (<2 spht). Despite these low grades, the barrier deposits have the largest average stone (diamond) size (1-2 carats/stone, cts/stn) of the entire Namibian mega-placer, given their proximity to the ancestral Orange River outfall. This study demonstrates that barrier shoreline evolution at the fluvial/marine interface was controlled by: (1) a strong and coarse fluvial sediment supply that sustained shoreline growth on a highly energetic coast, (2) accommodation space facilitating sediment preservation and (3) short-duration, high-frequency sea-level cycles superimposed on the∼30 m regional transgression, promoting hierarchal stacking of progradational deposits. During these sea-level fluctuations, diamonds were 'farmed' from older, shelf sequences in the offshore and driven landward to accumulate in '30 m Package' highstand barrier deposits. In spite of the large supply of diamonds, their retention in these deposits was poor due to an incompetent footwall of ancestral Orange River mouth sediment and the inherent cobble-boulder size of the barrier gravels. Thus the principal process controlling diamond entrapment in these barrier deposits was kinetic sieving in a coarse-grained framework. Consequently, at the marine/fluvial interface and down-drift for ∼5 km, larger diamonds (1-2 cts/stn) were retained in low-grade (<2 spht), coarse-gravel barrier shorelines. Smaller diamonds (mostly < I cts/stn) were rejected into the northward-driven littoral sediments and further size-sorted along ∼95 km of Namibian coast to accumulate in finer, high-grade beach placers (> 100 spht) where bedrock footwall promoted such high concentrations. The gravel-dominated palaeo-Orange River mouth is considered to be the ' heart' of the Namibian mega-placer, controlling sediment and diamond supply to the littoral zone further north. Although coarse gravel is retained at the river mouth, the incompetence of this highly energetic setting to trap diamonds renders it sub-economic. This ineffectiveness at the fluvial/marine interface is thus fundamental in enriching the coastal tract farther down-drift and developing highly economic coastal placers along the Atlantic coast of south-western Africa. / KMBT_363 / Adobe Acrobat 9.54 Paper Capture Plug-in

The Avon-Heathcote Estuary is of significant value to Christchurch due to its high productivity, biotic diversity, proximity to the city, and its cultural, recreational and aesthetic qualities. Nonetheless, it has been subjected to decades of degradation from sewage wastewater discharges and encroaching urban development. The result was a eutrophied estuary, high in nitrogen, affected by large blooms of nuisance macroalgae and covered by degraded sediments. In March 2010, treated wastewater was diverted from the estuary to a site 3 km offshore. This quickly reduced water nitrogen by 90% within the estuary and, within months, there was reduced production of macroalgae. However, a series of earthquakes beginning in September 2010 brought massive changes: tilting of the estuary, changes in channels and water flow, and a huge influx of liquefied sediments that covered up to 65% of the estuary floor. Water nitrogen increased due to damage to sewage infrastructure and the diversion pipeline being turned off. Together, these drastically altered the estuarine ecosystem. My study involves three laboratory and five in situ experiments that investigate the base of the food chain and responses of benthic microalgae to earthquake-driven sediment and nutrient changes. It was predicted that the new sediments would be coarser and less contaminated with organic matter and nutrients than the old sediments, would have decreased microalgal biomass, and would prevent invertebrate grazing and bioturbation activities. It was believed that microalgal biomass would become similar across new and old sediments types as the unstable new sediments were resuspended and distributed over the old sediments. Contact cores of the sediment were taken at three sites, across a eutrophication gradient, monthly from September 2011 to March 2012. Extracted chlorophyll a pigments showed that microalgal biomass was generally lower on new liquefied sediments compared to old sediments, although there was considerable site to site variation, with the highly eutrophic sites being the most affected by the emergence of the new sediments. Grazer experiments showed that invertebrates had both positive and negative site-specific effects on microalgal biomass depending on their identity. At one site, new sediments facilitated grazing by Amphibola crenata, whereas at another site, new sediments did not alter the direct and indirect effects of invertebrates (Nicon aestuariensis, Macropthalmus hirtipes, and A. crenata) on microalgae. From nutrient addition experiments it was clear that benthic microalgae were able to use nutrients from within both old and new sediments equally. This implied that microalgae were reducing legacy nutrients in both sediments, and that they are an important buffer against eutrophication. Therefore, in tandem with the wastewater diversion, they could underpin much of the recovery of the estuary. Overall, the new sediments were less favourable for benthic microalgal growth and recolonisation, but were less contaminated than old sediments at highly eutrophic sites. Because the new sediments were less contaminated than the old sediments, they could help return the estuary to a noneutrophic state. However, if the new sediments, which are less favourable for microalgal growth, disperse over the old sediments at highly eutrophic sites, they could become contaminated and interfere with estuarine recovery. Therefore, recovery of microalgal communities and the estuary was expected to be generally long, but variable and site-specific, with the least eutrophic sites recovering quickly, and the most eutrophic sites taking years to return to a pre-earthquake and non-eutrophied state. changes in channels and water flow, and a huge influx of liquefied sediments that covered up to 65% of the estuary floor. Water nitrogen increased due to damage to sewage infrastructure and the diversion pipeline being turned off. Together, these drastically altered the estuarine ecosystem. My study involves three laboratory and five in situ experiments that investigate the base of the food chain and responses of benthic microalgae to earthquake-driven sedimen tand nutrient changes. It was predicted that the new sediments would be coarser and less contaminated with organic matter and nutrients than the old sediments, would have decreased microalgal biomass, and would prevent invertebrate grazing and bioturbation activities. It was believed that microalgal biomass would become similar across new and old sediments types as the unstable new sediments were resuspended and distributed over the old sediments. Contact cores of the sediment were taken at three sites, across a eutrophication gradient, monthly from September 2011 to March 2012. Extracted chlorophyll a pigments showed that microalgal biomass was generally lower on new liquefied sediments compared to old sediments, although there was considerable site to site variation, with the highly eutrophic sites being the most affected by the emergence of the new sediments. Grazer experiments showed that invertebrates had both positive and negative site-specific effects on microalgal biomass depending on their identity. At one site, new sediments facilitated grazing by Amphibola crenata, whereas at another site, new sediments did not alter the direct and indirect effects of invertebrates (Nicon aestuariensis, Macropthalmus hirtipes, and A. crenata) on microalgae. From nutrient addition experiments it was clear that benthic microalgae were able to use nutrients from within both old and new sediments equally. This implied that microalgae were reducing legacy nutrients in both sediments, and that they are

Ihis work on the Sado outer estuary (western coast of Portugal) considers its bio-sedimentary characterization, and evaluates the prevailing hydrophysical and sedimentary environmental conditions. The quality status of the estuary is discussed. The thesis is based on the analysis of superficial sediments and benthic macrofauna collected from 133 sites, and on hydrodynamical data obtained from a mathematical model. The environmental variables considered were the superficial sediment temperature, granulometry and organic matter content, together with the water current velocities, flow and shear stress. The macrofaunal characterization and the analysis of the state of disturbance was based on a study of the composition, structure and spatial distribution of faunal assemblages and their relationship to the prevailing environmental conditions. The Sado was shown to be inhabited by an abundant and diversified fauna with high biomass. Two major faunal assemblages have been identified, a marine and an estuarine community, separated by a transition region. The estuarine community comprises the majority of the area and contains important subdivisions. The regions identified have been shown either to be controlled by anthropogenic inputs or to reflect mainly the effects of natural forces. The main structuring factors influencing the benthos are the hydrodynamic conditions, coupled with sediment type, and organic matter of natural and anthropogenic origin. Sedimentary organic enrichment effects have been noted in all the areas studied and in general the Sado outer estuary reveals signs of eutrophic conditions. In the more disturbed regions the macrofauna data also suggest chronic toxicity effects. Although disturbance effects due to anthropogenic inputs are suggested through the biosedimentary approach, the estuary as a whole can not be considered badly polluted. However, defaunated, impoverished and over-enriched areas, appear as a result of localised severe pollution indicating the need to improve effluent treatment systems. The methodological approach followed in this study has been shown to be effective in assessing the quality status of the Sado outer estuary. Multivariate and direct gradient analysis proved to be very useful methods and a detailed analysis of the macrofaunal species has been shown to be effective in the detection of organic enrichment effects in some of the areas. The extreme aspects of the gradients were identified by all the analytical techniques, but the univariate methods were shown to be poor at discriminating the more subtle effects.

The lower St Johns River is a low-gradient coastal river with tidal hydrodynamics that remain active from the Atlantic Ocean through to the upstream end of Lake George (river km 200). Salinity in the lower St Johns River is spatially and temporally variable, whereby the salinity distribution is driven primarily by the combination of ocean processes of tides and storm surges and hydrological processes of watershed runoff. This study examines the probability distributions and modes of behavior of salinity for present-day conditions using data, numerical modeling and eigen-analysis. The hypothesis is that long-term changes (decadal scale) in the ocean processes will cause the probability distributions of salinity to adjust, and therefore there is a quantifiable non-stationarity of salinity in the lower St Johns River (shifts in the probability distribution of salinity, as representative of salinity increase) due to sea-level rise. The numerical modeling is validated against data, then the model is applied to generate synthetic salinity records for the main river stem and tributaries of the lower St. Johns based on present-day conditions. The synthetic salinity records are transformed into probability distribution functions (PDFs) and eigen-functions. The same analysis is performed on synthetic salinity records generated by the model when applied in forecast mode (i.e., sea-level rise). Comparisons of the forecasted PDFs and eigen-functions with those for present-day conditions quantify the non-stationarity (shifts in probability distributions and changes in eigen-structure) of the salinity in the lower St Johns River. The underlying physics of the cause (sea-level rise)-effect (non-stationarity of salinity) relationship are assessed in terms of coastal/river hydrodynamics.

Phragmites australis is a perennial grass presently invading many intertidal and freshwater wetlands throughout much of the Atlantic Coast of North America. The spread of Phragmites into coastal wetlands is in part determined by available freshwater and nutrients, especially nitrogen, within the watershed where Phragmites populations occur. The Eastern Shore of Virginia is an intensive agricultural area, and watershed landcover may play a major role in Phragmites invasion. Forty-five Phragmites patches were sampled in eight VA Eastern Shore mainland watersheds and on a barrier island. Regardless of watershed landcover characteristics, there was little variation in Phragmites australis patch characteristics along the oceanside of the entire Eastern Shore of Virginia. Phragmites is a generalist with broad environmental tolerances. Thus, successful management and eradication plans may have broad scale application for this invasive grass.

With the global rise in frequency of harmful algal blooms in estuarine environments comes an increase in prevalence of toxic metabolites, such as microcystin (MC), that some of the cyanobacteria involved will produce. At high concentrations, MC may accumulate in consumer tissues and have deleterious effects on organisms; however impacts of the toxin on aquatic living resources at ecologically relevant concentrations have not been widely documented. We analyzed the effects of MC on juveniles of five fish species from the James River, Virginia to determine if MC has the potential to impede growth. Using three separate experimental approaches, it was shown that exposure to concentrations of the toxin currently observed in the James River estuary do not appear to significantly impact the growth or survivorship of tested fish species. Extraneous factors in parts of the study led to an inability to draw clear conclusions on mortality or growth impacts; however it is evident from the experiments that at least some of the fish species have biological mechanisms in place that allow them to effectively eliminate the toxin from their systems. An ability to extricate the toxin suggests the possibility for fishes to withstand MC exposures and sustain few negative health impacts at low MC concentrations.

This research examined effects of hypoxic environments on blue crabs, Callinectes sapidus in an estuarine environment. Hypoxic conditions were treated as a multiple stressor involving low dissolved oxygen (D.O.), increased carbon dioxide (hypercapnia), and low pH concurrently. The objectives were to: 1) identify hypoxiahypercapnia by monitoring D.O. and pH as an indicator of hypercapnia in shallow regions of the York River, 2) measure blue crab abundance, and 3) describe blue crab responses to hypoxiahypercapnia via field work at Taskinas Creek and lab measurements of respiration. Ambient D.O. and pH were positively correlated in the Taskinas Creek and York River sites (r= .73). Crab abundance (CPUE) was not significantly different among D.O. and pH ranges. It was concluded that hemolymph blood lactate concentration was not considered a good in situ biomarker for exposure to hypoxickypercapnic conditions. Oxygen uptake was not significantly different between normoxic and hypoxic conditions but was significantly affected by pH.

A 12-month study (January to December 2015) focused on the effects of tidal forcing on nutrient fluxes in the tidal, freshwater segment of the James River Estuary (JRE). Discrete sampling of nutrient chemistry and continuous monitoring of tidal discharge were used to determine the volume and timing of the tides, and differences in nutrient concentrations between incoming and outgoing tides. The goal of this study was to improve understanding of tidal influence on nutrient fluxes and their role in nutrient transport to the lower estuary. Results suggested that differences in nutrient concentrations between incoming and outgoing tides were small throughout the year. This finding suggests that nutrient fluxes at the study site, near the tidal fresh-oligohaline boundary of the James, are largely determined by tidal volume owing to weak concentrations gradients. Changes in water quality during seaward and landward tidal excursions into deeper versus shallower segments were analyzed to infer biogeochemical processes. Differences in oxygen production and nitrate utilization suggest greater autotrophy during landward excursions, consistent with more favorable light conditions. This work was conducted as a collaborative effort between Virginia Commonwealth University, the USGS, Randolph-Macon College, and Washington and Lee University participating in the “Mountains to the Sea” project.

Master of Science / Department of Geology / Allen W. Archer / Turnagain Arm is the hypertidal (commonly exceeding 9 m) west-east trending extension of Cook Inlet in south-central Alaska. The inlet formed from a drowned glacial valley that was subsequently filled with tidal deposits of silt and fine sand. The tidal system is semidiurnal with a prominent diurnal inequality. There are also variations due to spring and neap tides. Turnagain Arm is home to a tidal bore generated during spring tides that can reach heights of up to 2 m and travel at speeds of up to 5 m/s. Current reversals can be dramatic with ebb tidal velocities of 6 m/s changing to flood velocities of 10 m/s over a period of a few minutes. During the initial flood tide, highly turbid water can rise as fast as 10 cm/min. This combination of elements results in a highly dynamic depositional setting. Measurements taken in the inner estuary during several neap-spring cycles in the summers of 2007-08 documented deposition upon mud bars of as much as 8.9 cm per tidal event. Conversely, erosion of up to 13.5 cm per tidal event has been measured. The highest rates of deposition and erosion occurred during the spring tides while much lower rates occur during the neap tides. Some portions of the inner estuary are only submerged during the extreme high tides. The magnitude of the high tide needed to cover each site increases with increasing distance into the upper estuary. Even if submerged, deposition does not always occur. Such a high percentage of non-depositional events has real implications when interpreting tidal cyclicity of the rhythmites found at these sites.