Picea rubens(red spruce) populations experienced a synchronous rangewide decline in growth and vigor starting in the 1960’s, which was likely caused by climate change or environmental disturbances (e.g., acid deposition); However, it is yet unknown if populations continue to decline or have recovered. In the context of global warming, red spruce is a species of concern because it is at its southern continuous range margin in Massachusetts. This study uses tree-ring data coupled with population data from permanent plots to quantify the status of red spruce in Massachusetts. Tree cores were extracted from red spruce and used to examine radial growth rates, determine a growth-climate relationship, and document disturbance events. Red spruce at these plots ranged from 90 to 184 years old, and comprised 15 to 29 m2/ha-1 basal area. Over the past 50 years, red spruce has decreased in density, basal area, and relative importance while red maple, yellow birch, and American beech have increased. Red spruce saplings persisted in some plots, but the sapling layer was comprised mostly of American beech or red maple. However, red spruce seedlings were common at red spruce dominant plots indicating that if favorable conditions occur, it could return to its more dominant position in the canopy. Dendroclimatological analyses show that red spruce is sensitive to both temperature and precipitation. Most sites are correlated with temperature, while only twoforests were correlated to precipitation. The general temperature response of the red spruce studied was positively correlated with winter temperatures while the general precipitation response was negatively correlated with precipitation. Temporal analysis of the climate-growth response indicates that red spruce here have not had a temporally-stable, climate-growth relationship. Prior to 1960, radial growth was positively correlated with temperatures from November of the previous growing season to January of the current year. After 1960, all sites showed a shift in growth responses consistent with increased summer temperature stress; narrowed tree rings were formed during warm temperatures in July and August. Precipitation remained relatively constant over the past century, while temperatures have increased up to 2˚C across the study area. Of the two precipitation-sensitive forests, one forest shifted from being positively correlated with current January precipitation to negatively correlated with previous October precipitation while the second forest showed a strong positive relationship with August precipitation. Because the radial growth of red spruce here are mostly constrained by temperatures, there has been negative growth response to regional warming and precipitation has been stable, I suggest the change in climate response is potentially due to warming and a physiological threshold response to increasing temperatures. Interestingly, disturbance frequency and intensity have increased over the same time period, which could be either a trigger or a response to the shift in the growth-climate relationship.

In the summer of 2022, a co-assembly of metagenome was created using the microbes found at Barres Woods in Harvard Forest. 14 samples were taken, and sample was split into the organic and mineral layer, which totals 28 Bulk MAGs. Within this Co-assembly, 4 different genomes were found which were designated with the phylum of FCPU426. Three of which were considered medium quality and one being assigned high quality. The novel phyla first appeared in NCBI and GTDB databases in June 2018. The name FCPU426 dates to 2010 and was named based on the 16s amplicon sequencing. The novel phylum is shown to have common ancestors with the phyla of Goldbacteria and Firestonebacteria. Goldbacteria was determined to have the ability to break down cellulose to further enhance carbon cycling. In this analysis of FCPU426, the taxonomy of the phyla will be further investigated. FCPU426 was then annotated to determine if any of the cellulase genes are shared between itself and Goldbacteria. Further annotations were done to spot any genes of interest that create any distinctions between any of its counterparts.

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic Area Under the Curve (ROC AUC) score in training of 0.998. In multiple rounds of validation, using geographically distinct sets of holdout data, had mean accuracy of 0.998. The trained model was then used to assess tree mortality across a patchwork of different levels of burn severity at a site in Northern California. When applied to the study site significant variations were found in tree mortality across different fire severity treatments and landforms. This model shows potential for incorporation into predictive tree mortality models based on landform and climate.

Mountaintop removal mining (MTR) is a notorious stressor of stream ecosystems in the Central Appalachians. Valley fills (VF) lead to reduced occupancy, abundance, and species richness of stream salamanders. Multiple factors may be responsible for these reductions, but specifically habitat fragmentation and degradation may reduce colonization rates and increase local extinction rates. From 2013-2015, repeated counts of salamanders were conducted in stream reaches impacted by MTR/VF and compared to counts in reference reaches to answer the question: do stream salamander population dynamics differ between stream reaches impacted by MTR/VF and reference stream reaches? I also investigated dynamics of stream habitat using measures relevant to stream salamander persistence. Accordingly, I examined number of cover objects, percent detritus, hydroperiod, and specific conductance. From the salamander capture data, colonization and survival probabilities were lower in MTR/VF reaches than reference reaches. MTR/VF reaches also had fewer cover objects, higher percent detritus, constant stream flow, and elevated specific conductance. Although specific conductance was increased in MTR/VF reaches, it was not strongly correlated with colonization and survival. I suggest reduced rates of colonization and survival in MTR/VF stream reaches are driven by inhibited dispersal and reduced individual survival due to degraded terrestrial and aquatic environments.

This study quantifies the changes in vegetation composition and structure of a fire-excluded Pinus palustris (longleaf pine) wetland savanna restoration site in southeastern in comparison to a proximate contemporary reference site. The restoration site was invaded by hardwood species and off-site pines, and never underwent extensive soil disturbance. The restoration treatments involved logging across portions of the site and the reintroduction of fire across the entire site. All species present in 10m2 quadrats were recorded prior to treatment and throughout the 17 year study at reference and treatment sites. The community composition of both logged and unlogged sites converged over time, and became more similar to the reference site. We conclude that logging of off-site pine coupled with the reintroduction of frequent fires can be effective in restoring ground cover in remnant longleaf pine savannas withdisturbance.

The Black Mountain range of western North Carolina supports some of the most extensive, but threatened high elevation forests in the southern Appalachians. Of particular note, the insect pathogen, balsam woolly adelgid (Adelges piceae Ratzeburg) has been present on Mt. Mitchell for over fifty years. In anticipation of potential changes in forest composition, vegetation surveys were first conducted in 1966 on nine one-acre plots near the summit of Mt. Mitchell. These plots were re-surveyed in 1978, 1985 and 2002. The purpose of this study was to re-census those plots and use those data to analyze long-term trends in forest composition for fir, spruce-fir, and spruce-fir-hardwood forest types. Since the 1960s and 1970s, all three forest types have experienced a transition away from an understory with a preponderance of Fraser fir (Abies fraseri (Pursh) Poir.) seedlings and saplings, to forests with higher densities of canopy and sub-canopy fir. Canopy red spruce (Picea rubens Sarg.) has similarly increased in density in the fir and spruce-fir types but declined in the spruce-fir-hardwood forest type. In all types, there has been a sharp decline in hardwood seedlings/saplings since a hardwood seedling explosion in 1978. The current analyses indicate that fir and spruce-fir forests have regenerated since the most severe die-offs and that each forest type will experience future impacts from balsam woolly adelgid but these will occur in a non-synchronous pattern.

Phytophthora cinnamomi is a soil-borne oomycete pathogen causing root rot in susceptible host species. P. cinnamomi is thought to have originated in Southeast Asia, but has since been introduced to many regions around the world, where it causes dramatic declines in many forest tree species. In the eastern US, the primary susceptible tree species of concern are American chestnut (Castanea dentata), white oak (Quercus alba), and shortleaf pine (Pinus echinata). American chestnut, functionally eliminated in the early 1900s by the rapidly acting chestnut blight (Cryphonectria parasitica), has been the subject of decades-long breeding efforts aimed at improving chestnut resistance to chestnut blight. To improve chestnut restoration success, and restoration of other susceptible species, the distribution patterns of P. cinnamomi on a landscape scale must be better understood. This project was initiated to develop an improved method for detecting P. cinnamomi to permit high-throughput screening of forest soils, and to implement the improved detection approach in characterizing the distribution patterns of P. cinnamomi in developing soils on reclaimed surface mines in eastern Kentucky, as well as mature forest soils within an undisturbed watershed in a reference-quality eastern Kentucky forest. We developed an improved detection method using a molecular DNA-amplification approach (PCR), which demonstrated similar sensitivity to traditional culture-based methods, but required less time and space than traditional methods. We used this detection approach to screen soils from a chronosequence of reclaimed surface mines (reclaimed at different points in time) to evaluate whether reclaimed surface mined sites become favorable for P. cinnamomi colonization over time. Our analysis detected P. cinnamomi at the two older sites (reclaimed in 1997 and 2003), but we did not detect P. cinnamomi at the two newer sites sampled (reclaimed in 2005 and 2007). These results suggest that surface mined sites become favorable for P. cinnamomi colonization over time, and should not be considered permanently “Phytophthora-free.” We also collected ~200 samples from a watershed in UK’s Robinson Forest, from plots representing a gradient of topographic position, slope, and aspect. This survey indicated that P. cinnamomi distribution in forests is complex and can be difficult to predict; however, P. cinnamomi was detected in both drier upslope sites and in moister drainage sites.

Conventional Appalachian surface-mine reclamation techniques repress natural forest regeneration, and tree plantings are often necessary for reforestation. Reclaimed Appalachian surface mines harbor a suite of mammal herbivores that forage on recently planted seedlings. Anecdotal reports across Appalachia have implicated herbivory in the hindrance and failure of reforestation efforts, yet empirical evaluation of herbivory impacts on planted seedling vitality in this region remains relatively uninitiated. First growing-season survival, height growth, and mammal herbivory damage of black locust (Robinia pseudoacacia L.), shortleaf pine (Pinus echinata Mill.), and white oak (Quercus alba L.) are presented in response to varying intensities of herbivore exclusion. Seedling survival was generally high, and height growth was positive for all species. The highest herbivory incidence of all tree species was observed in treatments offering no herbivore exclusion. While seedling protectors lowered herbivory incidence compared with no exclusion, full exclusion treatments resulted in the greatest reduction of herbivore damage. Although herbivory from rabbits, small mammals, and domestic animals was observed, cervids (deer and elk) were responsible for 95.8% of all damaged seedlings. This study indicates that cervids forage heavily on planted seedlings during the first growing-season, but exclusion and tree species selection is effective at reducing herbivory.

Invasive exotic species (IES) responses to silvicultural treatments eight years after timber harvesting were examined and compared to one-year post-harvest IES survey in University of Kentucky’s Robinson Forest. The temporal effects of harvesting were further compared between harvested and non-harvested watersheds. Analyses were performed to identify IES spatial distribution and determine the relationships between IES presence and disturbance effects, biological, and environmental characteristics. IES prevalence was higher in the harvested watersheds and was influenced by canopy cover, shrub cover and disturbance proximity. Ailanthus altissima and Microstegium vimineum presence in the study area has decreased over time. Comparing to the 1-yr post-harvest study which only identified direct harvesting effects (e.g. canopy cover and disturbance proximities) as significant predictors, the 8-yr post-harvest survey results suggest that while harvesting effects and disturbance proximity still play an important role, environmental characteristics have also taken precedence in predicting IES presence. Overall IES prevalence has decreased but invasive plant species richness has increased over time. Results indicate that IES eradication may not need to be conducted immediately after harvesting, and when needed, can primarily target IES hotspots where low canopy cover, proximity to disturbance, and southwest facing slopes convene on the landscape.

The objectives of this study were to investigate temporal changes in the diversity of pine rockland Fabaceae, induced by anthropogenic factors. Herbarium collections spanning 170 years were used to analyze species frequency and richness. The results indicated temporal fluctuations in diversity with frequency of native species highest previous to the year 1920, and exotic-invasive species richness peaking after the 1960s. The accompanying species list resulting from the inventory included 122 Fabaceae species, in 56 genera, with an additional 19 species not previously listed for pine rocklands. The results emphasize the damage caused by early and deliberate introductions of exotic species, and reinforces previous knowledge that exotic-invasives seem to be increasingly harmful to local biodiversity. The results also provide evidence of the historical distribution of species, helpful to conservation and restoration efforts. This study provides a needed review and status update for the Fabaceae taxa of the pine rocklands.