Ellagitannins are plant phenolics characterized by biaryl-coupled gallic acid moieties esterified to a D-glucose core. They are widely distributed through higher plants. In the case of oaks, ellagitannin concentrations in heartwood can reach up to 10% (dry wt. basis). These secondary metabolites are not only important physiologically but also influence the economic value and quality of wood products that contain them. Efforts were made to develop and validate the methods used to quantify both soluble and insoluble ellagitannins. First, the efficiencies of the two commonly used extraction solvents, aqueous acetone and aqueous methanol were evaluated. The results showed that aqueous acetone is superior to aqueous methanol in obtaining higher vescalagin and castalagin yields. In a separate study, the method used for determining insoluble ellagitannins was found to under-estimate the contents of insoluble ellagitannins in wood products. Anhydrous methanolic HCl was found to be an excellent reagent for releasing insoluble ellagic acid and gallic acid (as methyl gallate) from biomass substrates. Optimization of both the reaction conditions and the gradient HPLC analysis has led to the development of a robust and reliable protocol. The chemical stability of the two predominant ellagitannins in oaks (vescalagin and castalagin) were evaluated in aqueous methanol and water. It was found that oxygen, pH and higher temperature (60 °C) affect their stability with higher temperature being the most prominent factor. Both vescalagin and castalagin were found unstable in methanolic solutions. Vestalagin, however, is less stable than castalagin. In the course of finding alternative models for ellagitannin biosynthesis study, both callus tissues and suspension cell cultures of white oak (Quercus alba) and sweetgum (Liquidambar styraciflua) were investigated for their possible use as models for ellagitannin biosynthesis. It was found that oak callus tissue cultures (Quercus alba) are capable of producing ellagitannins, and the production and profile of ellagitannins can be modified by adjusting the media composition. Comparison of extracts from the heartwood of Quercus alba with those from callus tissue reveals that they have similar ellagitannin profiles. Through manipulation of the media nitrogen and copper concentrations the callus tissue produced almost 3 times as much castalagin and vescalagin. Suspension cells of Quercus alba and Liquidambar styraciflua were found to be unsuitable for the study of biosynthesis of ellagitannins. These cells either did not produce any detectable level of ellagitannins or the production was unstable. Although the suspension cells could be elicited to produce ellagic acid with glycanases (Driselase), the levels of ellagic acid were too low for quantitative metabolic studies. A method using high performance liquid chromatography – mass spectrometry was developed and optimized with purified ellagitannins. Ellagitannins analyzed under the optimal conditions all provide base peaks of (M-H)- from which the molecular weights of the ellagitannins can be determined. Mild fragmentation was also achieved to give fragments characteristic of ellagitannins (loss of ellagic acid and gallic acid if present). These characteristic peaks allow for rapid identification of ellagitannins from other secondary metabolites present in the samples. Application of the HPLC/ESI-MS in the identification of monomeric ellagitannins in white oak heartwood extracts revealed that it can unambiguously identify the two monomeric ellagitannins, castalagin and vescalagin, and their degradation product, ellagic acid. The key fragmentation pathways of the ellagitannins are also described. Finally, preliminary work using proteomics to study the heartwood formation was conducted. Proteins from transition zone and sapwood were determined and resolved with two-dimensional electrophoresis. It was found that both sapwood and transition woods contain active enzyme(s) capable of catalyzing formation of ellagic acid from pentagalloylglucose. Preliminary results from the 2-D gel separation of sapwood and transition wood proteins showed more protein spots in sapwood than in transition wood, suggesting that sapwood not only had higher protein levels but also a great total number of proteins. The lower complexity of the transition wood proteome suggests that this material may be a good substrate for studying the biaryl-coupling process. / Ph. D.

Lysophosphatidic acid (LPA) is a bioactive lipid with a plethora of biological functions, including roles in cell survival, proliferation, and migration. Although high-performance liquid chromatography electrospray ionization tandem mass spectrometry (HPLC ESI-MS/MS) technology has been used to measure the levels of LPA in human blood, serum and plasma, current methods cannot readily detect the minute levels of LPA from cell culture. In this study, a novel HPLC ESI-MS/MS method with enhanced sensitivity was developed which allows accurate measurements of LPA levels with a limit of quantitation at approximately 10 femtomoles. The method was validated by quantitation of LPA levels in the media of previously characterized cell lines ectopically expressing autotaxin. Autotaxin overexpression induced an increase in several subspecies of LPA while others remained unchanged. Lastly, this HPLC ESI-MS/MS method was validated via biological assays previously utilized to assay LPA production. Hence, this new HPLC ESI-MS/MS will allow researchers to measure in vitro LPA levels and also distinguish between specific LPA subspecies for the delineation of individual biological mechanisms.

The aims of the work this thesis is based upon were to develop convenient analytical procedures for determining resin acids in biological and environmental matrices, and apply them to enhance understanding of the occurrence, exposure to and uptake by exposed individuals of resin acids. Particular focus has been on the workplace environment of the Swedish wood pellets industry. Sample extraction procedures and high-performance liquid chromatography/electrospray ionisation-mass spectrometry (HPLC/ESI-MS) methodologies were developed for measuring resin acids in dust, skin and urine samples. Chromatographic separation of abietic (AA) and pimaric acid was achieved by using a polar-embedded C12 stationary phase. The HPLC/ESI-MS method avoids undesirable oxidation of AA, which was found to occur during the derivatisation step in the standard MDHS 83/2 gas chromatography/flame ionisation detection (GC/FID) methodology, leading to false observations of both AA and the oxidation product 7-oxodehydroabietic acid (7-OXO). Personal exposures to resin acids in the Swedish wood pellet production industry were found to be lower, on average, than the British Occupational Exposure Limit for rosin (50 µg/m3). The oxidised resin acid 7-OXO, was detected in both dust and skin samples indicating the presence of allergenic resin acids. A correlation between air and post-shift urinary concentrations of dehydroabietic acid (DHAA), and a trend towards an increase in urinary 7-OXO during work shifts, were also observed. Whether the increase in 7-OXO was due to direct uptake or metabolism of other resin acids cannot be concluded from the results. An efficient HPLC/UV methodology with diode-array detection was developed for screening commercial products for rosin that could be used in laboratories lacking mass spectrometers. Very high concentrations of free resin acids were detected in depilatory wax strips using the method. / At the time of doctoral defense, the following paper was unpublished and had a status as follows: Paper 4: Submitted.

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No description available.

The fatty acid amides, a structurally diverse endogenous congener of molecules active in cell signaling, may prove to have diverse activity due to their interface with a number of receptor systems, including, but not limited to cannabinoid receptor 2 (CB2) and PPARγ. Select extracts of Echinacea spp. contain the fatty acid amides known as alkylamides. These extracts were a previously popular remedy relied on by U.S. physicians, one of the top sellers in the natural products industry and are currently a frequently physician prescribed remedy in Germany. In the series of experiments contained within, Galenic ethanolic extracts of Echinacea spp. root were used for the quantification, identification, degradation and bioactivity studies. On extraction, depending on the ratio of plant to solvent and fresh or dry, the data indicate that there is variability in the alkylamide classes extracted. For example the acetylene alkylamides appear to extract under different concentrations, as well as degrade faster than the olefinic alkylamides. In addition, the alkylamides are found to degrade significantly in both cut/sift and powdered forms of echinacea root. Human liver microsome oxidation of the major alkylamide dodeca-2E,4E,8Z,10Z-tetraenoic acid isobutylamide generate hydroxylated, caboxylated and epoxidized metabolites. The carboxylated metabolite has, thus far, shown different immune activity than the native tetraene isobutylamide. Bioactivity studies, based on cytokine modulation of the alkylamides have been assumed to be due to a classic CB2 response. However, the results of experiments contained herein suggest that IL-2 inhibition by the alkylamide undeca-2E-ene-8,10-diynoic acid isobutylamide, which does not bind to CB2, is due to PPARγ activation. These data, combined with data generated by other groups, suggest that the alkylamides of Echinacea spp. are polyvalent in effect, in that they modulate multiple biochemical pathways.

Thèse numérisée par la Direction des bibliothèques de l'Université de Montréal.

Les phytochélatines (PC) sont des polypeptides ayant la structure générale, (alpha-Glu-Cys)n-Gly, où n = 2 à 11. Leur synthèse est induite par un grand nombre de végétaux en réponse à une élévation de la concentration du milieu en métaux, en particulier le cadmium (ci-après, Cd). Le but de cette étude a été de développer un outil pour évaluer la biodisponibilité du Cd dans les eaux douces. Pour ce faire, une méthode analytique a été réalisée afin de déterminer les phytochélatines induites dans les algues C. reinhardtii. Celle-ci consiste à utiliser la chromatographie liquide couplée à la spectrométrie de masse en tandem (LCHP-SM/SM) "on-line". L’ionisation des molécules est celle faite par électronébulisation (IEN) (traduction de electrospray ionisation). L’objectif principal de ce mémoire est la validation de cette méthode : la détermination des courbes de calibration et des limites de détection et l'identification d'interférences potentielles. L’utilisation de dithiothreitol (DTT) à une concentration de 25 mM a été nécessaire à la conservation de la forme réduite des phytochélatines. En effet, suite à la validation de la méthode d’analyse des phytochélatines il a été démontré qu’elle représente un potentiel d’application. Ceci dans la mesure où l’induction des phytochélatines (PC2, PC3 et PC4) dans les algues C. reinhardtii a été possible à deux concentrations de Cd (1 x 10-7 M et 1 x 10 6 M) et ce, après plusieurs temps d'induction (1, 2, 4, et 6 h). Ainsi, l’étude de la stabilité des phytochélatines a été réalisée et toutes les températures examinées ont démontré une diminution des phytochélatines analysées par HPLC-ESI-MS/MS. Il se pourrait que la cause de la dégradation des phytochélatines soit physique ou chimique plutôt que bactérienne. Toutefois, un approfondissement au niveau de la purification de la solution d’extraction serait nécessaire à la mise au point de la dite méthode analytique afin de quantifier les phytochélatines dans l’algue C. reinhardtii. / Phytochelatins (PC) are polypeptides having the general structure, (alpha-Glu-Cys)n-Gly, where n = 2 to 11. Many plants respond to an elevated concentration of metals in environment, particularly Cd, by synthesizing PC. The purpose of this study was to develop a tool to assess the bioavailability of the Cd in fresh water by determining phytochelatins in algae, C. reinhardtii, by online HPLC-ESI-MS/MS. The gold of this work was the validation of the analytical method i.e. the determination of the calibration curves and the limits of detection. The addition of dithiothreitol (DTT), 25 mM, was found to be necessary to maintain the PC in their reduced form for analysis. It was shown that the liquid chromatography coupled to tandem mass spectrometry (HPLC-ESI-MS/MS) technique has excellent potential for PC analysis, however, it will still requires some more work with respect to sample purification. Furthermore, the stability of the PC was evaluated for different sample storage temperatures. At all temperatures studied, some degradation of PC was observed possibly due to physical rather than chemical or bacterial reasons. Finally, the induction of phytochelatins (PC2, PC3 and PC4) was observed in C. reinhardtii for two Cd concentrations (10-7 M and 10-6 M) and for several induction times (1, 2, 4, and 6 h).

La dégradation protéolytique du collagène de type II est considérée comme étant un facteur majeur dans le processus irréversible de dégradation de la matrice cartilagineuse lors d’ostéoarthrose. Outre les collagénases de la famille des métaloprotéinases de la matrice (MMP-1, -8, -13), la cathepsine K est parmi les seules enzymes susceptibles de dégrader la triple hélice intacte du collagène de type II, devenant ainsi un élément pertinent pour les recherches sur l’ostéoarthrose. L’objectif à court terme de notre étude consiste en l’identification et la caractérisation de sites de clivage spécifiques de la cathepsine K sur le collagène de type II équin. La technique d’électrophorèse SDS-PAGE 1D permet la visualisation des produits de digestion et la validation des résultats de la caractérisation moléculaire des fragments protéolytiques. La caractérisation est réalisée en combinant la digestion trypsique précédant l’analyse HPLC-ESI/MS. Les résultats ont permis d’établir les sites, présents sur la carte peptidique de la molécule de collagène de type II équin, des 48 résidus prolines (P) et 5 résidus lysines (K) supportant une modification post-traductionnelle. De plus, 6 fragments majeurs, différents de ceux produits par les MMPs, sont observés par SDS-PAGE 1D puis confirmés par HPLC-ESI/MS, correspondant aux sites suivants : F1 [G189-K190], F2 [G252-P253], F3 [P326-G327], F4 [P428-G429], F5 [P563-G564] et F6 [P824-G825]. Le fragment F1 nouvellement identifié suggère un site de clivage différent de l’étude antérieure sur le collagène de type II bovin et humain. L’objectif à long terme serait le développement d’anticorps spécifiques au site identifié, permettant de suivre l’activité protéolytique de la cathepsine K par immunohistochimie et ÉLISA, dans le cadre du diagnostic de l’ostéoarthrose. / The proteolytic degradation of type II collagen is believed to be mainly an irreversible event in the process of cartilage matrix degradation in osteoarthritis. Cathepsin K is the most active enzyme protease outside the matrix metalloproteinase (MMP) family (MMP 13, -8, -1) capable of degrading the intact triple helical type II collagen. The short term objective of our study was to characterize the specific cleavage sites of CK on type II collagen. Our long term goal is to develop antibodies specific to these sites to develop biomarkers to detect it’s cleavage, for the early diagnosis of OA. Thus, in order to achieve our first goal, Cathepsin K cleavage of equine type II collagen was first examined by SDS-PAGE electrophoresis. Molecular characterization of proteolytic fragments, and therefore cleavage sites, was performed using tryptic digestion followed by LC-ESI/MS analysis to establish a comprehensive peptide map which was used as a template to identify specific proteolytic cleavage by cathepsin K. Comprehensive peptide mapping provided information on post-translational modifications and permitted the identification of 48 proline (P) and 5 lysine (K) residues that were subject to post translational modification. Six major fragments were observed on 1D SDS-PAGE and confirmed by HPLC-ESI/MS including F1 [189-190], F2 [252-253], F3 [326-327], F4 [428-429], F5 [563-564] and F6 [824-825]. The observed F1 fragment showed that cleavage was three residues N-terminal to the site reported previously for bovine type II collagen. These new findings will be used to develop new analytical methods to quantify biomarkers associate to equine type II collagen degradation in osteoarthritis patient and/or to support the development of new treatments.

La dégradation protéolytique du collagène de type II est considérée comme étant un facteur majeur dans le processus irréversible de dégradation de la matrice cartilagineuse lors d’ostéoarthrose. Outre les collagénases de la famille des métaloprotéinases de la matrice (MMP-1, -8, -13), la cathepsine K est parmi les seules enzymes susceptibles de dégrader la triple hélice intacte du collagène de type II, devenant ainsi un élément pertinent pour les recherches sur l’ostéoarthrose. L’objectif à court terme de notre étude consiste en l’identification et la caractérisation de sites de clivage spécifiques de la cathepsine K sur le collagène de type II équin. La technique d’électrophorèse SDS-PAGE 1D permet la visualisation des produits de digestion et la validation des résultats de la caractérisation moléculaire des fragments protéolytiques. La caractérisation est réalisée en combinant la digestion trypsique précédant l’analyse HPLC-ESI/MS. Les résultats ont permis d’établir les sites, présents sur la carte peptidique de la molécule de collagène de type II équin, des 48 résidus prolines (P) et 5 résidus lysines (K) supportant une modification post-traductionnelle. De plus, 6 fragments majeurs, différents de ceux produits par les MMPs, sont observés par SDS-PAGE 1D puis confirmés par HPLC-ESI/MS, correspondant aux sites suivants : F1 [G189-K190], F2 [G252-P253], F3 [P326-G327], F4 [P428-G429], F5 [P563-G564] et F6 [P824-G825]. Le fragment F1 nouvellement identifié suggère un site de clivage différent de l’étude antérieure sur le collagène de type II bovin et humain. L’objectif à long terme serait le développement d’anticorps spécifiques au site identifié, permettant de suivre l’activité protéolytique de la cathepsine K par immunohistochimie et ÉLISA, dans le cadre du diagnostic de l’ostéoarthrose. / The proteolytic degradation of type II collagen is believed to be mainly an irreversible event in the process of cartilage matrix degradation in osteoarthritis. Cathepsin K is the most active enzyme protease outside the matrix metalloproteinase (MMP) family (MMP 13, -8, -1) capable of degrading the intact triple helical type II collagen. The short term objective of our study was to characterize the specific cleavage sites of CK on type II collagen. Our long term goal is to develop antibodies specific to these sites to develop biomarkers to detect it’s cleavage, for the early diagnosis of OA. Thus, in order to achieve our first goal, Cathepsin K cleavage of equine type II collagen was first examined by SDS-PAGE electrophoresis. Molecular characterization of proteolytic fragments, and therefore cleavage sites, was performed using tryptic digestion followed by LC-ESI/MS analysis to establish a comprehensive peptide map which was used as a template to identify specific proteolytic cleavage by cathepsin K. Comprehensive peptide mapping provided information on post-translational modifications and permitted the identification of 48 proline (P) and 5 lysine (K) residues that were subject to post translational modification. Six major fragments were observed on 1D SDS-PAGE and confirmed by HPLC-ESI/MS including F1 [189-190], F2 [252-253], F3 [326-327], F4 [428-429], F5 [563-564] and F6 [824-825]. The observed F1 fragment showed that cleavage was three residues N-terminal to the site reported previously for bovine type II collagen. These new findings will be used to develop new analytical methods to quantify biomarkers associate to equine type II collagen degradation in osteoarthritis patient and/or to support the development of new treatments.