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Characterizing the physical and hydraulic properties of pine bark soilless substratesWolcott, Caroline Courtney 06 November 2023 (has links)
Soilless substrates, such as peat, pine bark, and coir, are widely used as growing media in containerized crops for their favorable characteristics, including low bulk density, balanced air exchange and water retention, disease resistance, and low pH and salinity. However, improper irrigation of these media can have negative outcomes such as root asphyxia, pathogen development, and reduced plant growth. Understanding pore size distributions, water dynamics, and gas diffusivity of these substrates is essential to promote plant growth. The effects of different particle sizes of soilless media on processes such as infiltration, hydraulic conductivity, and gas diffusivity are also not well understood. The characterization of these effects is important for the overall improvement of container crop production.
This thesis presents three studies that aimed to characterize the physical and hydraulic properties of pine bark substrates, both unamended and amended with peat or coir. The first study looked at three substrate types: unamended, unscreened pine bark, peat-amended pine bark, and coir amended pine bark. Three methods were employed to quantify pore distributions: non-equilibrium infiltration measurements, equilibrium water retention characterization, and scanning electron microscopy. We characterized pore distributions during wetting and drainage for the three substrates. Coir-amended bark had the largest water-conducting porosity, highest hydraulic conductivity, and most water retention. Unamended pine bark had the highest microporosity, and the addition of peat and coir lowered macroporosity, with peat having the greater effect. The total porosity inferred from the infiltration method was significantly smaller than that inferred from drainage experiments due to assumptions related to pore shape.
The second study focused on defining hydraulic conductivity and water retention for pine bark substrates of five different particle sizes, <1 mm, 1-2 mm, 2-4 mm, 4-6 mm, and an unscreened fraction. We utilized the same methods from the first study. The resulting data showed that the smallest particle sizes (i.e., <1 mm and 1-2 mm) had the highest hydraulic conductivity and greatest water retention. The three larger sizes had lower hydraulic conductivity and poor water retention, including the unscreened fraction, which more closely followed the results of the 2-4 mm size.
The final study examined gas diffusivity of the five pine bark particle sizes at different moisture levels: 60% moisture content (initial conditions), saturated at the bottom of the sample, near-saturated at the sample bottom, and drained from saturation to container capacity. We used a one-chamber gas diffusion setup to find gas diffusion coefficients (Ds). The results displayed an inverse relationship between Ds values and substrate water content. In addition, the larger particle sizes were less sensitive to changes in water content due to their well-draining large pores.
Proper balance of aeration and water retention is necessary for the success of soilless growing media. Overall, the smaller particle size fractions had the best water retention and hydraulic conductivity rates while the larger fractions had the largest Ds coefficients. This work contributes valuable knowledge on the physical and hydraulic properties of different size fractions of pine bark substrates, which can assist nursery growers in optimizing water usage for sustainable container crop production. / Master of Science / Since the 1950's soilless substrates have been an important resource for growing a variety of fruits, vegetables, flowers, and ornamental plants. Soilless growing media have become more popular choices for containerized plant production compared to natural soils due to improved air exchange, increased disease resistance, and more plants per acre. They are also favored because they help conserve resources, reduce agricultural waste, and minimize transportation requirements as compared to traditional cropping methods. The most popular types of soilless media include peat, coir, compost, and pine bark. In the U.S., pine bark is the main substrate used, as it is renewable and widely available.
Growers still face many issues when using containerized crop production. For example, pine bark is susceptible to water runoff which can cause environmental problems and increase costs from this loss of water and fertilizer. Further characterizing of water and gas dynamics in of pine bark growing media is important for conserving water and fertilizer resources while optimizing plant growth in this container cropping industry. Pore characteristics, aeration, and water movement are key factors of substrates to be described to solve these challenges.
This project aimed to apply soil physics strategies to soilless media, focusing on describing pore sizes, water movement, water holding capacity, and air movement in pine bark substrates. We utilized three methods throughout this study. For the first method, we took infiltration measurements to examine how water moved into the media, while the second utilized controlled drainage experiments to observe how water moved out of the media. The final method was characterizing gas movement through the substrates at different water contents and particle sizes.
The results found showed that the smaller particle sizes and pine bark mixed with peat and coir had increased ability to retain water and allow water movement as compared to the larger particle sizes and unamended pine bark. In contrast, the larger particles had less water retention but improved gas movement. These results could be applied by stacking different particle sizes or mixes over one another could optimize water retention in the top of the container and drainage and gas movement in the bottom of the container. Overall, the application of this work is to create best management practices for growers to be able to balance water retention and gas movement in order to optimize plant growth.
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Stanovení hydraulických charakteristik půdy ve vybraném zájmovém území / Determination of hydraulic characteristics of soil in a selected areaSalač, Jan January 2018 (has links)
The diploma thesis is focused on issues of measurement and evaluation of hydraulic characteristics of soil. In the literary research, the definitions of hydraulic conductivity and retention curve of soil moisture, their measurements in laboratory and field conditions and the prediction of these characteristics by using of pedotransfer functions. In the practical part of the diploma thesis, an evaluation of the hydraulic conductivity of soil from the experimental areas near the village Bohaté Málkovice. Two-cylindrical and mini-disc infiltration meters were used for field measurements, and a constant-gradient permeameter was used in the laboratory. Physical and empirical equations were used to evaluate the hydraulic conductivity. The results were processed numerically, tabulated and then compared.
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Groundwater occurrence and quality in Bulawayo province, ZimbabweNygren, Anton, Nordenskjöld, Edvard, Östblom, Erik January 2016 (has links)
This study focused on determining the groundwater flow paths in the crystalline subsurface rocks of the Bulawayo metropolitan, Zimbabwe, through analysing the discontinuities of the electrical properties of the ground, as well as in the magnetic field of the underlying rocks. Further, borehole water quality was analysed by measuring and mapping several chemical parameters, specifically TDS, salinity and the electrical conductivity. The electrical and magnetic anomalies were measured at two field sites within the Bulawayo province, the Harry Allen Golf Course and the Barbour Fields dumpsite, while 120 boreholes were sampled for water quality in a large part the province. Two magnetometers were used to measure the magnetic field and the time and location of the measurements, which resulted, after processing in SURFER, into the magnetic field map of these areas. This was used, in conjunction with the geologic map of the Bulawayo province, in order to determine useful locations for the electrical resistivity surveys. These included electrical resistivity tomography and vertical electrical sounding and were performed with an earth resistivity/induced polarization (IP) meter in order to measure the electrical resistivity of the ground. Inverse modelling was used in the RES2DINV software program to produce the topographic image of resistivity. The results for the borehole sampling showed that the maps for the three chemical parameters were very similar, with the western and northern parts of the mapped area displaying higher concentration values. The results of the electrical resistivity surveying showed probable areas of groundwater flow with its relationship to electric conductivity.
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The imapct of drought and climate warming on Central European broad-leaved mixed forestsZimmermann, Jorma 09 September 2015 (has links)
No description available.
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Estudo do comportamento hidráulico de mistura solo-bentonita visando alternativa de emprego como sistema de proteção para aterros sanitários / Study of the hydraulic behavior of soil-bentonite mixture seeking employment as protection system for sanitary landfillsSilva, Christopher Fonseca da 27 February 2015 (has links)
Este trabalho apresenta um estudo sobre a influência do acréscimo de 4% de bentonita sódica, da anisotropia inerente, produzida pela compactação, e do estado de tensões no comportamento hidráulico de um solo areno-argiloso encontrado na região Costeira Sul do estado do Rio Grande do Sul. Neste estudo, busca-se não somente viabilizar o emprego do referido solo como barreira mineral em obras de proteção ambiental, mas também verificar seu desempenho, quando misturado ao aditivo, perante as condições de fluxo de água experimentalmente impostas, antes e depois da fase de consolidação, nas direções normal e paralela aos planos de orientação preferencial das partículas e poros a elas associados. Com o escopo de atingir tais objetivos, executaram-se dois métodos de compactação (ensaios Mini e Proctor Normal) para a moldagem de corpos de prova com planos de orientação preferencial das partículas ou de compactação normais (θ = 90º) e paralelos (θ = 0º) à vertical. As amostras de solo e mistura foram compactadas na energia Proctor Normal e submetidas aos ensaios triaxiais de condutividade hidráulica, em permeâmetro de parede flexível à carga constante, e de consolidação. A técnica permitiu determinar a condutividade hidráulica dos materiais para vazões desenvolvidas preferencialmente nas direções normal e paralela aos planos de compactação dos corpos de prova. Os resultados demonstram que o acréscimo de 4% de bentonita sódica provoca uma redução da condutividade hidráulica do solo, que supera o valor mínimo exigido de 10-9 m/s em ambas as direções de fluxo, habilitando o emprego deste material para a aplicação prevista. Além disso, verifica-se que a compactação confere um comportamento hidráulico anisotrópico ao solo, no entanto, quando misturado ao aditivo no teor indicado, seu comportamento se modifica, tornando-se mais isotrópico. Os resultados ainda revelam que o efeito da tensão de confinamento sobre a diminuição da condutividade hidráulica do solo e da mistura se mostra significativo para ambas as modalidades experimentais. / This work proposes to evaluate the influence of the inherent anisotropy, promoted by compaction, and the confining pressure on the hydraulic behavior of a clayey sand from the south coastal region of Rio Grande do Sul state (Brazil), in pure condition and mixed with 4% sodium bentonite content. This study aims to make possible the use of this soil as mineral barrier in environmental protection works, as well as evaluating the hydraulic behavior of both materials (soil and mixture), before and after the consolidation stage, when developed water flow conditions in the perpendicular and parallel directions in relation to the compaction planes of the compacted samples. In order to achieve these objectives, was performed a Standard Proctor Test and an alternative compaction test (Mini-test), intending to get specimens with compaction planes in the perpendicular (θ= 90º) and parallel (θ = 0º) directions in relation to the vertical. The soil and mixture samples were compacted at Normal Proctor energy and subjected to the triaxial consolidation and hydraulic conductivity tests. The technique allowed to evaluate the hydraulic conductivity of the specimens for flow perpendicular and parallel to the directions of the compaction planes. The results indicate that the increase of 4% sodium bentonite content reduces the hydraulic conductivity of the soil in both flow directions, making it suitable for employment as protection system in sanitary landfills or in other similar applications. Furthermore, it is observed that compaction provides anisotropic hydraulic behavior to the soil, however, when it is mixed with 4% sodium bentonite content, its behavior changes, becoming more isotropic. The results also reveal that the effect of the confining pressure on the decrease in hydraulic conductivity of the soil and mixture is significant in both adopted experimental conditions.
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Aplicação de métodos geoestatísticos no estudo das distribuições espaciais de condutividade hidráulica em áreas do Sistema Aquífero Guarani (SAG) e do Sistema Aquífero Bauru (SAB) no Estado de São Paulo / Application of geostatistical methods in the study of spatial distribution of hydraulic conductivity at areas of Guarani Aquifer System (GAS) and Bauru Aquifer System (BAS) in state of São Paulo, BrazilSá, Vitor Ribeiro de 23 March 2016 (has links)
A condutividade hidráulica (K) é um dos parâmetros controladores da magnitude da velocidade da água subterrânea, e consequentemente, é um dos mais importantes parâmetros que afetam o fluxo subterrâneo e o transporte de solutos, sendo de suma importância o conhecimento da distribuição de K. Esse trabalho visa estimar valores de condutividade hidráulica em duas áreas distintas, uma no Sistema Aquífero Guarani (SAG) e outra no Sistema Aquífero Bauru (SAB) por meio de três técnicas geoestatísticas: krigagem ordinária, cokrigagem e simulação condicional por bandas rotativas. Para aumentar a base de dados de valores de K, há um tratamento estatístico dos dados conhecidos. O método de interpolação matemática (krigagem ordinária) e o estocástico (simulação condicional por bandas rotativas) são aplicados para estimar os valores de K diretamente, enquanto que os métodos de krigagem ordinária combinada com regressão linear e cokrigagem permitem incorporar valores de capacidade específica (Q/s) como variável secundária. Adicionalmente, a cada método geoestatístico foi aplicada a técnica de desagrupamento por célula para comparar a sua capacidade de melhorar a performance dos métodos, o que pode ser avaliado por meio da validação cruzada. Os resultados dessas abordagens geoestatísticas indicam que os métodos de simulação condicional por bandas rotativas com a técnica de desagrupamento e de krigagem ordinária combinada com regressão linear sem a técnica de desagrupamento são os mais adequados para as áreas do SAG (rho=0.55) e do SAB (rho=0.44), respectivamente. O tratamento estatístico e a técnica de desagrupamento usados nesse trabalho revelaram-se úteis ferramentas auxiliares para os métodos geoestatísticos. / Hydraulic conductivity (K) is one of the parameters controlling magnitude of the groundwater velocity, and consequently, is one of the most important parameters affecting groundwater flow and solute transport. This study aims to estimate hydraulic conductivity values for two distinct areas, one in the Guarani Aquifer System (GAS) and the other in Bauru Aquifer System (BAS) through three geostatistical methods: ordinary kriging, cokriging and conditional simulation by turning bands. Carrying out statistic treatment of the available data in order to increase the database. The mathematical interpolation method (ordinary kriging) and the stochastic one (conditional simulation by turning bands) are applied to estimate directly the K values, while the methods of ordinary kriging combined with linear regression and cokriging allow to incorporate specific capacity (Q/s) values as a secondary variable. Moreover, the declustering by cells technique is applied for each geostatistical method to evaluate if there is improvement in their performance, which can be accessed by cross validation. The results of these geostatistical approaches indicate that the method of conditional simulation by turning bands with declustering technique is more suitable for GAS area (rho=0.55), whereas the ordinary kriging combined with linear regression method without this technique is for BAS area (rho=0.44). The statistical treatment and declustering technique undertaken in this study revealed to be useful tools for the application of geostatistical methods.
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Balanço de água no solo com milho sob sistema plantio direto e diferentes doses de nitrogênio / Water balance in the soil with maize under no tillage system and different nitrogen levelsSilva, Monica Martins da 28 September 2007 (has links)
O presente trabalho teve por objetivo: a) avaliar os processos do balanço de água no solo com culturas de milho sob sistema plantio direto e, adubada com diferentes doses de nitrogênio, em sucessão a plantas de cobertura do solo, e b) verificar possíveis alterações de algumas propriedades físico-hídricas do solo neste tipo de prática de manejo. O experimento foi conduzido em uma área experimental da ESALQ-USP, município de Piracicaba-SP. Segundo a classificação internacional de Köppen, o clima da região é do tipo Cwa, denominado "tropical de altitude". O solo do local é do tipo Latossolo Vermelho Amarelo. O delineamento experimental foi o de blocos casualizados com 4 repetições. Os tratamentos constaram de uma testemunha e de três doses de nitrogênio (60, 120 e 180 kg ha-1) na forma de sulfato de amônio, sendo que 30 kg ha-1 de N foram aplicados na semeadura e o restante em cobertura. A área da parcela experimental foi de 36 m2 (5,0 x 7,2 m), observando-se a declividade do terreno. A aveia preta foi semeada manualmente em julho de 2004 e o tremoço branco em junho de 2005, o milho em dezembro de 2004 e novembro de 2005, após manejo das plantas de cobertura do solo. No que diz respeito ao balanço de água o solo foram medidos a precipitação pluvial (P), o deflúvio superficial (R), a drenagem interna (D) (ou ascensão capilar) na profundidade de 0,8 m e a variação da armazenagem (Δh) na camada de solo de 0,0-0,80 m; a evapotranspiração real (ET) foi estimada como a incógnita na equação do balanço. Ainda foi avaliada a eficiência do uso da água (EUA) pela cultura do milho, bem como suas características agronômicas e produção de matéria seca (MS) das plantas de cobertura do solo. As propriedades físico-hídricas do solo avaliadas para atender o segundo objetivo do trabalho foram: porosidade total, macro e microporosidade do solo e densidade do solo. Os resultados obtidos mostraram que: quanto aos parâmetros do balanço de água, de forma geral, verificou-se que as doses de N os alteraram, uma vez que nos tratamentos com aplicação de N, o solo se encontrou com uma Δh relativamente menor que o tratamento sem N, refletindo em menor valor de D nesses tratamentos, sendo traduzido em maior absorção de água pelas plantas, bem como maior EUA e maior rendimento de grãos. Quanto às propriedades físico-hídricas do solo, percebeu-se tendências de mudança, principalmente no que se refere à macro e microporosidade do solo, condicionadas pela alteração estrutural do solo. Entretanto, estas mudanças ocorrem paulatinamente, com o tempo e com a aplicação de N, sendo interessante um estudo em longo prazo no SPD, para se obter resultados mais significativos e conclusivos quanto a essa prática de manejo na região. / The objective of this work was: a) to evaluate the processes of the water balance in the soil with maize plants, under no tillage system (NTS) and different nitrogen levels, in succession to cover crops; b) to verify possible alterations of some soil physico-hydric properties due to the no tillage system practice. The experiment was carried out in Piracicaba, SP, Brazil on a Typic Hapludox, locally called Yellow Red Latosol. According to Köppen's classification, the region climate is of Cwa type, tropical highland. The experimental design was of randomized blocks with four replicates. The treatments consisted of one control and three nitrogen levels (60, 120 and 180 kg ha-1 of N) as ammonium sulphate, 30 kg ha-1 of N being applied in the sowing and the remain in covering. The area of experimental plot was 36 m2 (5.0 x 7.2 m), observing the land slope. Avena strigosa was sown manually in July 2004 and Luppinus albus in June 2005, the maize in November 2004 and 2005, after handling of the cover crops. In relation to the soil water balance, it was evaluated the precipitation (P), the runoff (R), the internal drainage (D) (or capillary rise) at the 0.80 m of depth, soil water storage variation (Δh) at the 0.0-0.80 m layer and the evapotranspiration (ET). The latter, was considered as unknown in the water balance equation. The maize WUE was also calculated, as well as yield components and dry matter cover crops. The soil physico-hydric properties evaluated were: total porosity, macroporosity, microporosity and dry bulk density. The results showed that: for the soil water balance, generally, the N levels changed the equation parameters. As a result, the treatments with N application had lower Δh than the treatment without N, implying in a lower D in these treatments and leading to a higherwater absortion by plants, as well as WUE and yield grain. The soil physico-hydric properties have showed trends of changing, mainly for macro and microporosity, due to the soil structural change. However, these alterations, occur slowly, with the time and the N application. Therefore, it is necessary to study the long-term NTS to have significant and conclusive results for this soil management in this region.
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Desenvolvimento de metodologia para a determinação da mobilidade de água no solo / Development of a method to determine water mobility in soilEngler, Marcela Prada de Campos 27 April 2007 (has links)
As características hidráulicas do solo têm uma importância fundamental relacionada à disponibilidade de água para as plantas e ao transporte de solutos no solo. O modelo bifásico ou "móvel-imóvel" presume que o teor de água no solo (θ) pode ser dividido em duas frações: uma fração móvel (θm) e uma outra imóvel (θim). Define-se mobilidade μ da água no solo como a razão θm/θ. Correlações entre as funções θ(h), K(h) e μ(h) são esperadas, uma vez que essas três propriedades são relacionadas com a mesma estrutura do sistema poroso do solo. O objetivo do presente trabalho foi apresentar uma hipótese correlacionando a função mobilidade com a de condutividade, e testá-la através de dados obtidos segundo uma metodologia de laboratório desenvolvida. O experimento foi realizado em Piracicaba, SP e em Braunschweig, Alemanha. Amostras indeformadas de cinco solos (Latossolo Vermelho-Amarelo, no Brasil e Orthic Luvisol, Stagno-gleyic Luvisol, Dystric Podzoluvisol e Gleyic Podzoluvisol, na Alemanha) foram coletadas para a determinação das propriedades hidráulicas de retenção e mobilidade da água no solo. O método utilizado para a determinação da mobilidade da água consistiu na aplicação de um volume de água contendo o íon Cl- como traçador (um "pulso hidráulico") à amostra de solo sob sucção com o objetivo de simular eventos de chuva ou irrigação, que promovem uma alteração hidráulica rápida no solo. A difusão do íon entre as frações móvel e imóvel foi considerada desprezível, uma vez que o pulso hidráulico foi aplicado em uma única parcela e diretamente no solo, tornando o processo relativamente rápido. Resultados obtidos nos cinco solos avaliados indicam a existência de uma correlação linear entre μ e o valor de K/(dK/dθ), conforme hipotetizado. Utilizando o sistema de equações de Van Genuchten – Mualem, μ(h) pode portanto ser estimado por parâmetros da curva de retenção. A metodologia proposta permitiu a determinação da mobilidade da água em amostras de solo sob condições laboratoriais. A mobilidade da água mostrou ser uma função do volume relativo (v) aplicado podendo a relação μ – v ser parametrizada pelo ajuste de uma equação simples, com apenas um parâmetro. Não foi possível averiguar a existência de uma relação empírica entre esse parâmetro e os parâmetros da equação de Van Genuchten, possivelmente em função do número pequeno de dados disponíveis. / Soil hydraulic properties are essential for the determination of plant water availability and solute transport into the soil. The biphasic or mobile-immobile model concept assumes the soil water content (θ) to be divided in two fractions: a mobile fraction (θm) and an immobile fraction (θim). Soil water mobility, μ is defined as the ratio θm/θ. Relationships between θ (h), K(h) e μ (h) are probable since these properties are related to the same soil pore structure. The objective of this study was to test a hypothesis regarding a correlation between the mobility function and the hydraulic conductivity function, using a new developed laboratory method to determine soil water mobility. The experiments were conducted in Piracicaba, Brazil and in Braunschweig, Germany. Undisturbed soil samples were collected in five soils (Oxisol, in Brazil, Orthic Luvisol, Stagno-gleyic Luvisol, Dystric Podzoluvisol e Gleyic Podzoluvisol, in Germany) to determine hydraulic properties and soil water mobility. The method used to determine water mobility consists in a water volume with Cl- ion as a tracer ("hydraulic pulse") applied to a soil sample under suction, simulating a rainfall or irrigation event leading to abrupt hydraulic changes. The ion diffusion between the mobile and immobile water fractions was negligible as the hydraulic pulse was applied directly to the soil in a relatively short process. Results of five evaluated soils indicate the existence of a linear correlation between μ and K/(dK/d θ), confirming the hypothesis. Using the Van Genuchten – Mualem equation system, μ(h) can therefore be estimated by retention curve parameters. The proposed laboratory method allowed determining soil water mobility in soil samples under laboratory. Soil water mobility showed to be a function of the applied relative volume (v), while the relationship μ – v could be modeled by a simple, one-parameter equation, however, it was not possible to verify the existence of an empirical relation between this parameter and parameters from the Van Genuchten equation, possibly due to small number of available data.
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Partição da extração da água do solo por plantas entre camadas com propriedades hidráulicas distintas / Partition of root water extraction between soil layers with distinct hydraulic propertiesRocha, Marlon Gomes da 08 June 2009 (has links)
A facilidade com que uma raiz pode extrair água do solo é determinada pela condutividade hidráulica do solo e gradiente do potencial energético da água, ambos função do teor de água no solo. Nessa dissertação descreve-se o teste experimental de um modelo de extração e de partição da água do solo pelo sistema radicular de uma planta cujo sistema radicular se divide entre camadas de solo com propriedades hidráulicas contrastantes. O estudo foi conduzido em ambiente protegido com plantas de sorgo (Sorghum bicolor (L.) Moench) cultivadas em lisímetros com dois compartimentos separados fisicamente (splitpot). Quatro desses lisímetros foram construídos, preenchidos com material de dois tipos de solo de diferentes classes texturais (um solo de textura média - AR e outro de textura argilosa - AG). Durante um mês e meio foi aplicado um regime hídrico alternando a irrigação entre os compartimentos. O teor de água nos compartimentos dos lisímetros foi monitorado com TDR e tensiômetros. O material dos dois solos foi analisado conforme metodologia padrão quanto às suas propriedades de retenção e condução da água. A densidade radicular foi determinada por pesagem no fim do experimento, tendo ficado em torno de duas vezes maior no solo AR do que no AG. Foi possível observar que a extração de água ocorreu preferencialmente do compartimento do lisímetro com maior potencial de fluxo matricial. Em certas ocasiões houve transferência de água do lado de maior ao lado de menor potencial de fluxo matricial, com a liberação da água ao solo pelo sistema radicular (hydraulic lift). Em relação ao modelo, para compensar pelo efeito da heterogeneidade da distribuição radicular, da atividade radicular e do contato solo-raiz, incluiu-se um fator empírico f de correção no modelo. O valor de f foi determinado por ajuste numérico procurando-se uma correlação máxima entre modelo e observação nos quatro lisímetros. Para os solos AR e AG, os valores de f assim determinados foram 0,01506 e 0,003713, respectivamente. O modelo testado descreveu razoavelmente bem as observações com a utilização desses valores de f. / Root water extraction is determined by soil hydraulic conductivity and water potential gradients, both dependent on soil water content. In this dissertation the experimental test of a root water extraction and partition model is described for a plant whose root system is divided over soil layers with distinct hydraulic properties. An experiment was conducted in a greenhouse with Sorghum (Sorghum bicolor (L.) Moench) plants growing in split-pot lysimeters containing two physically divided compartments. Four of these lysimenters were built, filled with material from two soils with different texture (a médium textured soil - AR and a clayey soil - AG). During a month and a half a water regime was applied alternating the irrigation among the compartments. The soil water content in the compartments was measured with TDR and tensiometer equipment. Soil hydraulic properties retention and conductivity were analyzed by standard methods. Root density was determined by weighing at the end of the experiment, resulting in values twice as high in soil AR compared to soil AG. It could be observed that water extraction occurred preferentially from the lysimeter compartments with the highest matric flux potential. At certain occasions, water transfer from the compartment with higher matric flux potential to the lower one was observed, transferring water from root to soil (hydraulic lift). Referring to the model, in order to compensate for root distribution heterogeneity, root activity and soil-root contact, an empirical factor f was added to the model. Its value was determined by a numerical fitting procedure aiming the highest correlation between model and observation in the four lysimeters. For soils AR and AG, the values of f determined were 0.01506 and 0.003713, respectively. The tested model described the observations reasonably well using these values of f.
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Caractérisation fonctionnelle de protéines en interaction avec l'aquaporine PIP2;1 / Functional characterisation of proteins interacting with the aquaporin PIP2;1Champeyroux, Chloé 29 November 2017 (has links)
La conductivité hydraulique racinaire (Lpr) traduit la capacité de transport d’eau de la racine. Lors de son trajet du sol vers le xylème, l’eau diffuse au sein de l’apoplasme ou au travers des cellules (voie de cellule-à-cellule). Au niveau de l’endoderme, la diffusion apoplasmique de l’eau est bloquée par le cadre de Caspari et des lamelles de subérine. La voie de cellule-à-cellule dépend principalement de l’activité des aquaporines régulées en partie par des interactions protéiques. Ce travail caractérise de nouveaux interactants de l’aquaporine racinaire PIP2;1 : le récepteur kinase RKL1 et 4 protéines de fonction inconnue appartenant à la sous-famille 1 des Casparian Strip membrane domain Protein Like (CASPL1) (CASPL1-B1/B2/D1/D2). RKL1 est exprimée dans l’endoderme, est capable d’interagir physiquement avec PIP2;1 et stimule in vitro le transport d’eau par l’aquaporine. Cependant, l’inactivation de RKL1 n’affecte pas la Lpr sans que cela ne puisse être expliqué par une redondance fonctionnelle avec son plus proche homologue, RLK902. Une étude bibliographique suggère que l’interaction entre RKL1 et PIP2;1 interviendrait dans une voie de signalisation en réponse à une attaque pathogène. Concernant les CASPL, D1 est exprimé dans tous les tissus, alors que B1, B2 et D2 semblent uniquement exprimés dans des territoires subérisés. Ce profil suggère une implication de B1, B2 et D2 dans une régulation des aquaporines et de la subérisation. Au niveau moléculaire, D2, malgré son interaction physique avec PIP2;1, ne module pas le transport d’eau par l’aquaporine. En revanche, B1 interagit préférentiellement avec PIP2;1 sous une forme phosphorylée et stimule le transport d’eau par l’aquaporine. Au niveau de la plante entière, l’inactivation d’un ou deux gènes CASPL n’affecte ni la Lpr., ni la subérisation. Par contre, l’inactivation de PIP2;1 et PIP2;2 révèle un effet inhibiteur de ces aquaporines sur la subérisation. Cette étude a permis de décrire de nouveaux mécanismes originaux de régulation des aquaporines. Elle pose également, la question de l’existence d’une relation entre les transports d’eau par la voie apoplasmique et par les aquaporines. / The root hydraulic conductivity (Lpr) reflects the water transport capacity of the root. During its transfer from the soil to the xylem, water can diffuse in the apoplasm or through the cells (cell-to-cell pathway). At the endodermis, the apoplastic diffusion of water is blocked by the Casparian Strip and suberin lamellae. The cell-to-cell pathway mainly relies on aquaporin activity which can be regulated by protein interactions. This study aims at characterizing new interactants of the root aquaporin PIP2;1: the receptor kinase RKL1 and 4 proteins of unknown function belonging to the Casparian Strip membrane domain Protein Like 1 sub-family (CASPL1-B1/B2/D1/D2). RKL1 is expressed in the endodermis, can physically interact with PIP2;1 and stimulates its water transport function in vitro. However a loss-of-function of RKL1 does not affect the Lpr., independently of a putative functional redundancy with its closest homolog RLK902. Concerning CASPL, D1 is expressed in every tissue of the root whereas B1, B2 and D2 appear to be specifically expressed in suberized tissues. This suggests a putative role of these isoforms in aquaporin regulation and suberisation. At the molecular level, D2 does not modulate PIP2;1 water transport activity despite a physical interaction between the two partners. By contrast, B1 interacts with PIP2;1 preferentially in its phosphorylated form and enhances the water transport activity of the aquaporin. At the plant level, disrupting one or two CASPL genes neither impact the Lpr nor affect the suberisation. However, the loss of function of both PIP2;1 and PIP2;2 reveals a negative effect of these aquaporins on suberisation. In conclusion, this study, uncovered novel regulation mechanisms of aquaporins. It also raises the question of the existence of a putative relationship between water transport by the apoplastic pathway and by aquaporins.
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