Herbivorous reef fish are a key functional group for the ecological resilience of coral reefs. Asthey feed on algae, a major resource competitor of coral polyps, they can prevent and reversecoral-macroalgal phase shifts. The resilience of the reefs against such phase shifts is given bythe ability of herbivores to keep the system in a cropped state from filamentous algae or bytheir capacity to feed on macroalgae. Most of the management plans that aim to protect coralreefs have been focusing on the establishment of marine protected areas or no-take areas wherefishing activities are strictly restricted or prohibited. In low-income countries, such managedareas can be difficult to accept from a fisher´s perspective and lack of money also tends to leadto limited surveillance capabilities and lowered compliance. These challenges are important toaddress when managing small-scale fisheries and where fish are considered as both, amarketable commodity and a subsistence good.A perhaps less contentious strategy for fishers is gear-based management, where the use offishing gears that are detrimental to coral reef resilience are restricted and at the same timegears that do not compromise resilience are promoted. This study aims to investigate how ninedifferent fishing gears (i.e. different lines, traps, nets and spears) used in the coral reef fisheriesof Zanzibar (Tanzania) capture herbivorous reef fish that can prevent (preventers) or reverse(reversers) coral-macroalgal phase shifts. Two interesting findings emerged from the study.First, different fishing gears had different impacts on these two functional groups where lines,large traps and seine nets fisheries had most impacts. Second, there were monsoonaldifferences in the catch of preventers and reversers. These findings are discussed in relation toi) similar studies conducted in different reef environments and ii) the feasibility of gear-basedmanagement in Zanzibar.

Please read the abstract in the 00front part of this document / Dissertation (MSc Agric)--University of Pretoria, 2007. / Animal and Wildlife Sciences / unrestricted

The blue duiker, Philantomba monticola and common or grey duiker, Sylvicapra grimmia represent two of the three duiker genera as well as two of the three species occurring in Southern Africa. The two species have not been adequately studied in their habitats within the Eastern Cape Province of South Africa, and this thesis centres around their biology with focus on diet and dental microwear. Faecal analysis was used to study the diet of blue duiker at Salem in the Albany district, and of common duiker on two farms, one a predominantly cattle farm at Kasouga and the other a farm for cultivation of chicory at Grants valley, both in the Bathurst district. The validity of faecal analysis was reviewed, and its applicability to blue and common duiker assessed. The method was appropriate for diet analysis of both species, as the common duiker is shy and secretive and the blue duiker is a rare and protected species which does not habituate readily. Results showed that the blue duiker was mainly folivorous with a seasonally stable diet of 79 percent dicot foliage and only 17 percent fruit. Common duiker diet at both study sites comprised mostly dicot foliage, with only two monocotyledonous plant species. Twenty-seven and nineteen plant species were identified in the diets of common duiker at Kasouga and Grants valley respectively and the annual percentage occurrences of dicot foliage in the diets were about 99 percent at both study sites. The predominantly browsing common duiker, therefore offered negligible competition for food resources to the grazing cattle on Kasouga farm. Both blue and common duiker fed selectively, with approximately one third of the total number of plant species identified in their diets providing at least 50 percent of the food eaten annually. Ehretia rigida was the most important plant species in the diets of both duiker species. Chicory, Chichorium intybus provided more than one third (35.6 percent) of the winter diet and a substantial proportion (14.4 percent) of the spring diet of common duiker at Grants valley, thereby confirming earlier reports of this species feeding on chicory and other cultivated crops. The diet of common duiker at Kasouga did not vary seasonally but that of common duiker at Grants valley did vary and this was attributed to utilisation of chicory. Results from the dental microwear analyses did not show any significant differences in dental microwear between blue and common duiker, but supported and confirmed that the two were browsing species, characterised by many pits and few scratches on their dental surfaces. A high incidence of pits was found on the dental surfaces of both duiker species, and was attributed to utilisation of fruit in the diet.

Spiders were sampled at Mpala Research Centre, Laikipia, Kenya by pitfall-trapping and sweep-netting from May 2001 to July 2002, at a Kenyan Long-term Exclosure Experiment. The aim was to establish species composition, checklist and examine spider responses to disturbances caused by cattle, megaherbivores (giraffe and elephants) and mesoherbivores (other ungulates) by looking at three levels of resolution, namely the overall community, guilds and individual species. This is the first controlled replicated experimental study on the effects on invertebrates (spiders) by different land uses (access by large herbivores). A total of 10,487 individuals from 132 species belonging to 30 families were recorded. The family Salticidae had the highest number of species (24), followed by Gnaphosidae (20), Araneidae and Lycosidae (15 each), Theridiidae and Thomisidae (8 each) and Zodariidae (4). Most of the other families had fewer than 4 species. Throughout the study period, species not previously sampled emerged after rainfall peaks. Exclosure treatments affected plant cover, spider diversity and total species mainly through the effects of cattle, whose presence significantly reduced relative vegetation cover. An increase in vegetation cover significantly increased the diversity, total species and species evenness of the overall spider community (total samples data set). Megaherbivores and mesoherbivores had no effects on overall spider diversity. Relative vegetation cover explained approximately 20-30% of variation in community diversity, species richness and species evenness. At the guild level of resolution, the exclosure treatments had no significant effects on diversity, species richness and species evenness of web builders, plant wanderers and ground wanderers. Plant wanderers were significantly and positively correlated with relative vegetation cover, which explained 17% of variation in their diversity. Six individual species responded strongly and in contrasting ways to the same environmental variables, indicating that this level was more sensitive to environmental changes than guilds or the overall spider community. Spider diversity, relative vegetation cover and rainfall varied at a temporal scale of months and not at a spatial scale of hundreds of metres. Only species diversity and species richness from sweep-netting samples and total species from pitfall-trapping varied significantly at a spatial scale of hundreds of metres. Ordination analysis revealed that sweep-netting samples were a better indicator of grazing impacts than pitfalltrapping or combined samples and grouped to reflect cattle grazing, non-cattle grazing and to a small extent the control treatments. Other ordination analyses showed that only samples from sweep-netting and not from pitfall-trapping, were spatially partitioned at a scale of hundreds of metres. This study concludes that the spider fauna of black cotton soil habitats is rich and useful for environmental monitoring and that monitoring of several individual species as indicator of grazing impacts in savanna could be useful and relatively easy.

Economic valuation of the Okavango Delta can support decision making in a complex socio-economic environment in which economic development depends on a deep understanding of the value of biodiversity. The use of a natural resource accounting framework in determining the value of goods and services is crucial. The total economic value of the Okavango Delta was estimated by using primary (household valuation) and secondary data. A natural resource accounting framework was used. The components of the total economic value were the composition of wild herbivores and vegetation, and the functional values, which comprised direct use values of wild herbivores, river reed, thatching grass, wild fruits, fuelwood and palm leaves, indirect consumptive values of honey production, carbon sequestration, livestock grazing, milk production, non-consumptive use of tourism, and existence and bequest values. The values of the composition and function are expressed in per/ha values. The value of the composition of wild herbivores was estimated at P1 444 992 400 (US$ 294 850 699.2) or US$ 27.4/ha, while the functional value was estimated at P185 913 117.4 (US$ 37 527 840.96 or US$ 619.77/ha. Of the estimated direct use values of vegetation, river reed had the highest value of US$ 29.0/ha, while the highest value among indirect use values was that of milk production (US$ 8.5/ha). These values of selected resources reflect the contribution of the value of biodiversity of the Okavango Delta to the overall economy of the country and represent initial estimates of costs to society if these resources are lost. The estimated values can be used to raise awareness among decision makers of the economic benefits of conserving the Okavango Delta. Overall, the findings showed that the various components of the total economic value of the Okavango Delta were comparable to other wetlands in the region. / Thesis (PhD (Agricultural Economics))--University of Pretoria, 2006. / Agricultural Economics, Extension and Rural Development / unrestricted

Afin d'accroître leur survie et leur succès reproducteur, les espèces proies tentent de maximiser leur apport énergétique tout en évitant la prédation, induisant un compromis entre acquisition des ressources alimentaires et détection des prédateurs. Cependant, les ajustements comportementaux des herbivores impliqués dans ce compromis peuvent être influencés par de nombreux paramètres environnementaux, sociaux et individuels et varier entre individus d'une population. Ce travail de thèse a pour objectif de mieux comprendre comment les herbivores proies ajustent leur compromis entre vigilance et approvisionnement en fonction du risque de prédation, du contexte social et de la disponibilité des ressources ; ainsi que d'étudier si ces ajustements varient entre individus. Basées sur l'étude de femelles kangourous gris de l'Est (Macropus giganteus) et de femelles impala (Aepyceros melampus), j'ai tout d'abord observé que bien que de nombreux facteurs influençaient la vigilance et l'approvisionnement à court terme, ces comportements étaient principalement influencés par la variation de la ressource à long terme. Ensuite, j'ai démontré que les variations de contextes écologiques et sociaux tels que le risque de prédation, la ressource alimentaire et la compétition induisaient des réponses comportementales différentes au regard de ce compromis, ainsi que sur la fonction et le coût de la vigilance. Enfin, j'ai observé l'existence de variations entre individus, plus ou moins exprimées dans différentes conditions. Il apparaît que les animaux régulent leur activité de vigilance afin de maximiser l'acquisition de ressources, ou d'informations sociales, tout en assurant leur sécurité / Prey species foraging under a risk of predation have to trade between food acquisition and safety from predation in order to increase their fitness. This trade-off is commonly investigated by studying the trade-off between foraging and vigilance activities. However, vigilance and foraging can be affected by numerous environmental, social, and individual parameters which can also vary seasonally and differ between individuals from the same population. In this context, the overall objective of my PhD was to better understand how herbivorous prey animals manage the feeding/vigilance trade-off at a fine scale, considering the wide range of variables that may affect it, individual variation, and the different functions of vigilance, using female eastern grey kangaroos (Macropus giganteus) and impalas (Aepyceros melampus) as models. I observed that despite the many factors that shape vigilance and feeding rates over short time scales, these behaviours were mainly driven by variation in food resources over longer temporal scales. I also highlighted that predator and social contexts induced different behavioural responses in relation to this trade-off, and that decisions of prey to adjust their vigilance in terms of function and cost were driven by predation risk, food availability, and competition but varied between seasons. Finally, I observed that between-individual variation occurs for this trade-off but that this variation is context dependant. This thesis shows that prey animals constantly adapt their behaviour and strategies according to the situation they experience, in order to balance the acquisition of food and social information with staying safe

No description available.

L’écologie nutritionnelle des populations de cervidés revêt une grande importance en contexte de population surabondante. L’intense pression d’herbivorie de certaines populations de cervidés nuît à la régénération de la flore endémique et entraîne une baisse de la biodiversité. On explique encore mal la sélection alimentaire chez ces herbivores, ce qui nuit d’une part à notre capacité de prédire d’éventuels changements dans les trajectoires floristiques, et d’autre part à notre capacité d’anticiper la réponse démographique de ces herbivores. Or, notre capacité à acquérir des connaissances sur l’écologie nutritionnelle des herbivores peut être limitée par les contraintes logistiques et méthodologiques nécessaires à l’évaluation de la qualité nutritionnelle dans un contexte d’étude écologique, de même que par un manque d’objectivité dans la définition de devises alimentaires appropriées pour l’animal d’étude. Les principaux objectifs de mon projet de doctorat sont donc de développer de nouvelles méthodologies dans l’étude des interactions entre un grand cervidé, le cerf de Virginie (Odocoileus virginianus) et son habitat, et d’implémenter ces nouveux outils dans le cadre d’études écologiques. J’ai effectué mes recherches à l’île d’Anticosti, qui est un laboratoire naturel bien adapté à l’étude des populations abondantes de cervidés. Le cerf de Virginie y a été introduit en l’absence de prédateurs naturels il y a plus de 100 ans, et cette population de cervidés est l’une des les plus denses au monde. La forte pression d’herbivorie a profondément changé la composition floristique sur l’île. Puisque l’industrie forestière et le tourisme issu de la chasse au cerf y sont les deux activités économique les plus importantes, l’étude des interactions cerf-forêt y est cruciale, tant sur le plan scientifique que pour le développement régional. Cette thèse se décline en 4 chapîtres centraux (i.e. chapitres 1,2, 3 et 4) écrits sous formes d’articles. Les deux premiers articles sont consacrés à l’élaboration de nouvelles méthodes facilitant le monitoring de la nutrition du cerf de Virginie à l’île d’Anticosti. Dans un premier temps (chapitre 1), j’utilise des modèles prédictifs utilisant la spectroscopie dans le proche infrarouge ainsi que certaines propriétés chimiques des fèces de cerf afin de prédire son régime alimentaire. Je compare ensuite (chapitre 2) différentes méthodes afin de prédire des variables alimentaires obtenues par des digestions In vitro de différents fourrages qui utilisent la liqueur ruminale de cerf. Les deux chapitres suivants sont intégrateurs et propose des implémentations de nouvelles méthodes dans le cadre d’études écologiques à l’échelle du paysage. Je propose dans le chapitre 3 un nouvel indice de qualité alimentaire qui utilise la spectroscopie dans le proche infra-rouge, les géostatistiques ainsi que des données d’inventaires floristiques afin d’estimer les patrons de qualité alimentaire à l’échelle du paysage. Finalement, dans le chapitre 4, je cherche à expliquer les patrons de régénération en sapin beaumier dans certains secteurs de l’île d’Anticosti en dépit des densités élevées de cerf de Virginie. Pour ce faire, je teste une hypothèse qui stipule que les conditions édaphiques des parcelles en régénération affectent négativement la qualité alimentaire des tissus foliaires.

Reindeer appear to have strong positive effects on plant productivity and nutrient cycling in strongly nutrient-limited ecosystems. While the direct effects of grazing on vegetation composition have been intensively studied, much less is known about the indirect effect of grazing on plant-soil interactions. This thesis investigated the indirect effects of ungulate grazing on arctic plant communities via soil nutrient availability and plant nutrient uptake. At high density, the deposition of dung alone increased plant productivity both in nutrient rich and nutrient poor tundra habitats without causing major changes in soil possesses. Plant community responses to dung addition was slow, with a delay of at least some years. By contrast, a 15N-urea tracer study revealed that nutrients from reindeer urine could be rapidly incorporated into arctic plant tissues. Soil and microbial N pools only sequestered small proportions of the tracer. This thesis therefore suggests a strong effect of dung and urine on plant productivity by directly providing nutrient-rich resources, rather than by stimulating soil microbial activities, N mineralization and ultimately increasing soil nutrient availability. Further, defoliation alone did not induce compensatory growth, but resulted in plants with higher nutrient contents. This grazing-induced increase in plant quality could drive the high N cycling in arctic secondary grasslands by providing litter of a better quality to the belowground system and thus increase organic matter decomposition and enhance soil nutrient availability. Finally, a 15N natural abundance study revealed that intense reindeer grazing influences how plants are taking up their nutrients and thus decreased plant N partitioning among coexisting plant species. Taken together these results demonstrate the central role of dung and urine and grazing-induced changes in plant quality for plant productivity. Soil nutrient concentrations alone do not reveal nutrient availability for plants since reindeer have a strong influence on how plants are taking up their nutrients. This thesis highlights that both direct and indirect effects of reindeer grazing are strong determinants of tundra ecosystem functioning. Therefore, their complex influence on the aboveground and belowground linkages should be integrated in future work on tundra ecosystem N dynamic.

The growing demand for meat worldwide by the increasing human population (6.8 billion) calls for an increase in livestock production as well as attention to environmental sustainability. Production increases are critical especially in Africa with the highest annual population growth rate (2.5%), where most communities rely on livestock for protein supply. Attempts by intensive livestock farming to optimize production are limited by fibrous quality feeds (roughages) and their unavailability in both developed and developing countries. The overall objective of this study was to scan both domestic and wild herbivores in search for microbial ecosystems with superior fibrolytic potential that can be used as feed additives. It was hypothesized that microbes from wild herbivore can improve fibrous feed breakdown in domesticated ruminants. Experiment 1 evaluated the use of fresh or in vitro cultured faecal inoculum (FF) from two Jersey cows as a potential substitute for rumen fluid (RF). Cultured FF was a better substitute for fresh RF as demonstrated by percentage differences in exocellulase activity (0.4%) and true degradability (TD) (7%), compared to the differences observed between fresh RF and FF for exocellulase activity (33%) and TD (14%). It was applied in subsequent experimentation because it was cost effective (no surgery and reduced sample collection time). The second experiment compared the fibrolytic competence of cultured faecal inocula from three hindgut fermenters (miniature horse (mH), horse (H) and Zebra (ZB)) in summer and winter grazing in their natural environment. Both cellulase enzyme assays (exocellulase, endocellulase and hemicellulase) and in vitro maize stover digestibility study ranked the herbivores according to their fibrolytic competence as ZB > H > mH. The effect of cultured faecal inocula from H, ZB and wildebeest (WB) and its combined systems (N1=H+WB, N2=H+ZB, N3=WB+ZB and N4=H+WB+ZB) on the fermentation of maize stover were also evaluated in vitro. Both enzyme assays and MS degradability studies showed that the combined systems were higher (P<0.01) in fibrolytic activities compared to the individual systems. The microbial ecosystems were ranked as N1 > N2 > N4 > H > ZB > WB >N3; and N3 > N1 > N4 > WB > N2 > ZB >H by their exocellulase activity and degradability parameters, repetitively. The diversity of microbial ecosystems was confirmed by numerous active carboxymethyl cellulase bands present on a carboxymethy cellulose zymograms in experiment 4. The combined microbial ecosystems contain more active and variable bands of cellulases than in the individual microbial ecosystems. Systems N3 and N1 were considered as the best inocula for rumen transinoculation studies. Experiment 5 assessed the in vivo effect of direct-fed microbials from N1 and N3 on MS degradation, ruminal fermentation characteristics and cellulase enzyme profile in sheep. Feed dry matter intake increased (P<0.03) in N1 but tended to increase when inoculated with N3. The treatments, N1 and N3 increased (P<0.05) rumen exocellulase (9.4 and 33.2%, respectively) and endocellulase (82.1 and 47.1%, respectively) specific activities but not hemicellulase activity. Maize stover degradability parameters for N3 (TD, degradability of the insoluble fraction of MS, effective degradability, total SCFA and propionate) measured after 96 h of incubation tended (P>0.05) to be numerically different (1.1, 5.4, 7.1 and 7.9%, respectively). Increase in propionate for N3 was accompanied by higher total SCFA and lower CH4. A decrease in CH4 and no difference in CO2 allow both systems to be environmentally friendly since they have been associated with global warming. These studies showed that direct-fed microbials from N1 and N3 inocula have the potential of improving the utilization of maize stover feeds in ruminants, particularly in view of its simplicity and availability which allows it to be implemented at a relatively lower cost compared to other specific strains or microbial cultures. However, more research is required to identify, purify and classify the superior fibrolytic microbes in the most active ecosystems. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2012.