In this study, we used E. coli strain BL21 (DE3) to express the recombinant protein his-tag streptavidin. To find out the optimal production conditions, we studied on the culture conditions, medium composition, induction conditions and the timing of induction. In the purification processes we tried to find out the difference between hydrophobic column and affinity column. We also tested the effect of heat treatment on the crude extract to increase the recombinant protein yield. The results showed that when cultured in LB medium, the optimal culture conditions of recombinant protein expression are 37¢XC, pH 6.0 to 7.0, and the induction temperature is 37¢XC. The best induction time is at late log phase or the early stationary phase when OD600 values reached to the ranged of 1.1 to 1.8. The inducer, IPTG concentration is 0.1 mM, which can also replaced with 2 mM lactose. The best production medium is TB medium. When cultured in 5 liters fermentor with optimal culture and induction condition, the highest recombinant protein yield could be 81.1 mg /L. To improve the purification process, we used a affinity chromatography. The purified high homogeneous recombinant protein had a high biotin binding activity up to 14 U / mg, and the recovery yield could be as high as 97% in comparing with the hydrophobic column was only 51%. When we treated the crude extract with 75 ¢J for 10 min, the biotin binding activity was 14.1 U / mg, but the recovery rate decreased to 64 %.

Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

<p>Sarcoptes scabiei is a disease-causing parasitic mite of humans and animals that is prevalent worldwide. The parasite lives in burrows in the epidermis of its host. These burrows are formed by a combination of mechanical destruction by the mite and secretion of various factors.</p><p>The enzyme superoxide dismutase (SOD) catalyzes the dismutation of superoxide into oxygen and hydrogen peroxide. As such, it is an important antioxidant defense in nearly all cells exposed to oxygen. In this project, the enzyme was expressed in transformed Escherichia coli cells. The SOD cDNA from S. scabiei was ligated into two different expression vectors: pPU16 and pET-14b. The S. scabiei SOD open reading frame reported here is 696 nucleotides long and yields a protein with a molecular weight of  69.5 kDa. Only one of the constructs was successfully created, using pPU16. The construct was designated pPU110 and has a sequence coding for a hexahistidine tag downstream of the SOD cDNA and has a sequence coding for the maltose binding protein (MBP) upstream.</p><p>The expression plasmid pPU110 was verified by DNA-sequencing and the tested in different expression experiments. Analysis using SDS-PAGE showed that recombinant fusion SOD could be readily expressed in E.coli.</p>

Pseudomonas aeruginosa is a Gram-negative opportunistic human pathogen known to cause a variety of infections that are difficult to treat due to extremely high resistance to almost all antibiotics currently in clinical use. One of the major contributors to this resistance is the active efflux of antibiotics from the cell, primarily by action of the Resistance Nodulation Division (RND) family of efflux pumps. These pumps are composed of three proteins; an inner membrane RND pump, a periplasmic membrane fusion adaptor protein, and an outer membrane protein. The mechanism by which the three proteins interact to form a functional complex is largely unknown and the methods currently available for their study involves expression systems geared for high levels of expression. In the case of membrane proteins which play a role in clinically relevant activities, such as multidrug resistance, an expression system which does not always reflect biologically relevant levels of protein in the cell is not ideal for studying their interactions as correlation of conclusions from interaction studies to true interactions may not be possible. In this study a single copy gene expression system was designed and demonstrated to better reflect clinically relevant levels of overexpression compared to a multi-copy expression system. Quantitative-real time PCR analysis of C-terminally hexa-histidine tagged outermembrane protein, OpmH, expression shows approximately 100-fold and 20-fold overexpression from multi-copy and single-copy expression systems respectively. OpmH-H6 was successfully purified from both multi copy and single copy expression systems with proportionate purification schemes indicating the feasibility of single copy expression systems for the study of membrane bound protein complexes. / UOIT

Sarcoptes scabiei is a disease-causing parasitic mite of humans and animals that is prevalent worldwide. The parasite lives in burrows in the epidermis of its host. These burrows are formed by a combination of mechanical destruction by the mite and secretion of various factors. The enzyme superoxide dismutase (SOD) catalyzes the dismutation of superoxide into oxygen and hydrogen peroxide. As such, it is an important antioxidant defense in nearly all cells exposed to oxygen. In this project, the enzyme was expressed in transformed Escherichia coli cells. The SOD cDNA from S. scabiei was ligated into two different expression vectors: pPU16 and pET-14b. The S. scabiei SOD open reading frame reported here is 696 nucleotides long and yields a protein with a molecular weight of  69.5 kDa. Only one of the constructs was successfully created, using pPU16. The construct was designated pPU110 and has a sequence coding for a hexahistidine tag downstream of the SOD cDNA and has a sequence coding for the maltose binding protein (MBP) upstream. The expression plasmid pPU110 was verified by DNA-sequencing and the tested in different expression experiments. Analysis using SDS-PAGE showed that recombinant fusion SOD could be readily expressed in E.coli.

Ribosomal stalk proteins are known to play important role in protein synthesis. The ‘stalk’, an extended structure on the large subunit of the ribosome is composed mainly of two to three dimers of L12 and one L10 protein, which forms the base of the stalk. In E. coli, four copies of L12 molecules exist as dimer of dimers forming the pentameric L8 complex together with L10. This thesis is a collection of four interlinked studies on the structure, function and application of the ribosomal stalk protein L12. In the first study, we have mapped the interaction sites of the four major translation GTPase factors (IF2, EF-Tu, EF-G &amp; RF3) on L12 molecule using heteronuclear NMR spectroscopy. Surprisingly, all these factors produced an overlapping interaction map spanning two α-helices on the C terminal domain of L12, thereby suggesting a general nature of the interaction between L12 and the GTPase factors. L12 is known to stimulate GTPase activity of the elongation factors EF-Tu and EF-G. Here, we have clarified the role of L12 in IF2 mediated initiation of protein synthesis. Our data suggest that rapid subunit association requires a specific interaction between the L12 protein on the 50S and IF2·GTP on the 30S preinitiation complex. We have also shown that L12 is not a GAP for IF2 and GTP hydrolysis triggers IF2 release from the 70S initiation complex. The next question we have addressed is why multiple copies of L12 dimer are needed on the ribosome. For this purpose, we created a pure E. coli strain JE105, where the terminal part of rplJ gene coding for the binding site of one L12 dimer on protein L10 was deleted in the chromosomal locus. Using ribosomes with single L12 dimer we have observed that the rate of the initiation and elongation involving IF2 and EF-G gets most compromised, which in turn decreases the growth rate of the bacteria.  This study also indicates that L12 can interact with different GTPase factors in a specialized manner. Lastly, we have developed an application making advantage of the multiple L12 dimers on the ribosome. By inserting a (His)6-tag at the C-terminus of the L12 protein we have created a novel E. coli strain (JE28), where all ribosomes are tetra-(His)6-tagged. Further, we have developed a single step method for purification of the active (His)6-tagged ribosomes from JE28.

京都大学 / 新制・課程博士 / 博士(工学) / 甲第24818号 / 工博第5161号 / 新制||工||1986(附属図書館) / 京都大学大学院工学研究科合成・生物化学専攻 / (主査)教授 浜地 格, 教授 森 泰生, 教授 生越 友樹 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DFAM

Juvenil idiopatisk artrit (JIA) är en autoimmun reumatisk sjukdom som drabbar barn före 16 års ålder. Den vanligaste varianten är oligoartikulär JIA, vilket innebär att den påverkar två till fyra leder med symptom så som svullnad, ömhet, stelhet, rodnad eller nedsatt motorik. Oligoartikulär JIA är även associerad med uveit, vilket är en autoimmun ögonsjukdom som förstör synen. Sjukdomen är i nuläget dåligt förstådd och forskning behövs för att kunna identifiera markörer som kan användas för diagnostik. Enzymkopplad immunadsorberande analys (ELISA) är inom vårdens laborativa arbete en mycket vanlig metod för att undersöka patienters serum och identifiera specifika markörer som tyder på sjukdom. En ELISA kan utföras på olika sätt beroende på om den letar efter antigen eller antikroppar. Syftet med denna studie var att optimera en indirekt ELISA för detektion av autoantikroppar och genomföra en metodjämförelse med en redan väl undersökt kulbaserad autoantikroppsmetod. Studien omfattar 14 serumprov från olika patienter och använder sig av rekombinant framställda protein epitope signature tag (PrEST)-antigener för att identifiera autoantikroppar. PrEST-antigener består av ett humant variabelt proteinsegment och en protein-tag som består av ett albuminbindande protein (ABP) med en N-terminal HIS-tag (His6ABP). För att förhindra ospecifik inbindning till His6ABP-delen av PrEST-antigenerna så framställdes His6ABP, med vilket serum inkuberades innan de undersöktes med ELISA. Då resultatet tolkades binärt kunde stor likhet ses mellan de två olika metoderna för samtliga PrEST-antigener som undersöktes, vilket innebär att metoden kan fortsätta utforskas. Resultatet visade också att His6ABP-delen skulle kunna orsaka korsreaktivitet, vilket dock inte är något negativt för metodens validitet. / Juvenile idiopathic arthritis (JIA) is an autoimmune rheumatic disease that affects children before the age of 16. The most common variant is oligoarticular JIA, which means it affects two to four joints with symptoms such as swelling, tenderness, stiffness, redness, or reduced mobility. Oligoarticular JIA is also associated with uveitis, an autoimmune eye disease which damage eyesight. The disease is currently poorly understood, and research is needed to identify markers that can be used for diagnostics. Enzyme-linked immunosorbent assay (ELISA) is a very common method in healthcare laboratory work to examine patients' serum and identify specific markers that indicate disease. An ELISA method can be performed in different ways depending on whether it is looking for antigen or antibodies. The aim of this study was to optimize an indirect ELISA for detection of autoantibodies and conduct a method comparison with an already well established bead-based autoantibody array method. The study included 14 sera samples from different patients and used recombinantly produced protein epitope signature tag (PrEST) antigens to identify autoantibodies. PrEST antigens consist of a human variable protein segment and a protein tag consisting of albumin binding protein (ABP) with an N-terminal HIS-tag (His6ABP). To prevent non-specific binding to the His6ABP portion of the PrEST antigens, His6ABP were recombinantly produced and used for pre-absorption of serum before being examined by ELISA. When the result was interpreted binary, great similarity could be seen between the two different methods for all PrEST antigens examined, which calls for further exploring of the method. The result also showed that the His6ABP part could possibly cause cross-reactivity, which is interesting but doesn’t affect the validity of the method.

Aim of this diploma thesis was to prepare two protein antigens and two monoclonal antibodies, all based on VP2 minor protein of human polyomaviruses BK virus and Merkel Cell Polyomavirus. One monoclonal antibody was being prepared against unique part of VP2 protein (N-terminal epitope, not present in VP3 protein). A cell line producing such monoclonal antibody has never been established before due to low immunogenicity of the epitope. Our approach was successful in terms of mouse immunization, however, serious problems with hybridoma line stability appeared later during the preparation process. Preparation of antibody targeted to the sequence of VP2 protein of Merkel Cell Polyomavirus was another aim of this thesis. Mouse immunization and hybridoma fusion were performed successfully. After four rounds of cloning in order to purify an established clone, nine clones were cultivated in larger scale. This cultivation probably led to diminished antibody specificity and loss of production ability in most of the hybridoma cells. One more cloning should give rise to an established clone with sufficient production. Two preparations of protein antigens were performed in two expression systems. DNA encoding C-terminally truncated protein VP2 of BK virus fused with His-tag was cloned into a vector suitable for...

Enquanto as células humanas sintetizam purinas pela via de novo e pela via de recuperação, protozoários parasitas as sintetizam somente pela via de recuperação. Por essa razão, as enzimas que compõem essa via são importantes alvos para o desenvolvimento de novas drogas antiparasitárias. A enzima APRT converte adenina e &#945-D-5-fosforibosil 1-pirofosfato (PRPP) a AMP na via de recuperação de purinas. Nesse trabalho, a APRT e a APRT-His recombinantes foram caracterizadas por métodos bioquímicos e espectroscópicos. As expressões do gene aprt contidos nos vetares pET29+ (Novagen) e pQE30 (Qiagen) renderam 5 e 10 mg.mL-1 de APRT e APRT-His, respectivamente, na forma solúvel. A APRT permaneceu estável e homogênea in vitro em Tris pH 7,5 contendo 5 mM de MgSO4 e 150 mM de KCl mas a APRT-His mostrou-se instável e insolúvel nesse pH e acima de 0,5 mg.mL-1. O estudo de solubilidade revelou que a APRT-His é parcialmente estabilizada em Tris pH 8,5 contendo 150 mM de KCl devendo ser purificada e mantida nesse tampão durante os ensaios espectroscópicos e a adição de 50 mM de histidina mostrou-se eficiente para a concentração da enzima até 8mg.mL-1. A caracterização bioquímica da APRT e da APRT-His revelou que elas são diméricas nos seus tampões e têm PI igual a 6,45 &#177 0,20 e 7,7 &#177 0,16, respectivamente. Os ensaios de atividade enzimática indicaram que a APRT é duas vezes mais ativa do que a APRT-His. Os espectros de CD da APRT-His foram mais intensos do que os espectros da APRT e mostraram perfil de hélice &#945 . Os resultados da desconvolução revelaram que a APRT-His tem cerca de 10% mais hélice-&#945 do que a APRT. O valor de teor de estrutura secundária da APRT equivale aos valores extraídos dos dados cristalográficos da APRT de L donovani e de L tarentolae. Os espectros de emissão de fluorescência mostraram que a APRT-His e a APRT possuem máximos de emissão em 342 e 332 nm, respectivamente. Além disso, eles indicaram que o PRRP e o AMP suprimem a fluorescência do Trp presente na APRT. A supressão foi relacionada à posição dos ligantes localizados no sítio ativo da enzima e a ausência de supressão nas amostras de APRT-His foi relacionada à presença de Mg2+. Os resultados indicam que a presença dos resíduos de histidina na região N-terminal da APRT-His induziu a modificação estrutural da enzima levando a precipitação contínua. Nesse sentido, a ausência dos resíduos de histidina incorporados à enzima favoreceu a estabilidade da proteína in vitro. / Human cells synthesize purine nucleotide by again and salvage pathways, while parasitic protozoa use only salvage pathways. For this reason, the enzymes that compound the salvage pathway are important targets to development of new antiparasitic drugs. The enzyme adenine phosphoribosyltransferase (APRT) converts adenine and &#945-D-5-phosphoribosyll-pyraphosphate (PRPP) to adenosine monophosphate (AMP) at salvage pathway. In this work, the APRT and APRT-His recombinants had been characterized by biochemical and spectroscopic methods. The expression of the aprt genes from L. tarentolae inserted into pET29+ (Novagen) and pQ30 (Qiagen) vectors yielded 5 and 10 mg.mL-1 of the APRT and APRT-His, on soluble form, respectively. The APRT remained stable and homogeneous in vitro at Tris pH 7.5 containing 5 mM MgSO4 and 150 mM KCl, but APRT-His was instable and insoluble above 0.5 mg.mL-1 at the same pH. The solubility study showed that histidine increased the APRT-His solubility and it is partially stabilized at Tris pH 8.5 containing 150 mM KCl. The addition of the histidine 50 mM was efficient for concentrations up to 8 mg.mL-1.Then, the APRT-His was purified and storage in that buffer for spectroscopic assays. The biochemical characterization of the APRT and APRT-His indicated that a both are dimercs in its buffers, and they have isoelectric points at pH 6.45 &#177 0.20 and 7.7 &#177 0.16, respectively. By enzymatic activity assays, the APRT is twice activer than APRT-His. The CD spectra of the APRT-His were more intense than the APRT spectra. and showed helix &#945 profile. The fluorescence spectra marked a maximum emission fluorescence at 342 nm for the APRT-His and 332 um for the APRT. In addition, the spectra revealed that PRPP and AMP quenched the fluorescence of the tryptophan (Trp) into APRT. The quench was related to position of the ligands inside active site of the enzyme and the absent of fluorescence of the Trp, inside APRT-His, was related to absent of the Mg2+. The results has demonstrated that the presence of the histidine residues at N-terminal region of the APRT-His induced to conformational changes of the enzyme following to continuos precipitation. In the same sense, the absent of histidine residues associated to enzyme favored to stability of the protein in vitro.