Master of Science / Department of Clinical Sciences / James D. Lillich / Objective - To compare the biomechanical characteristics of the currently recommended (CR) technique and a less invasive (LI) surgical approach for arthrodesis of the proximal interphalangeal joint (PIPJ). Additionally, to describe a technique for cartilage removal and disruption of the subchondral bone. Study design - Randomized paired limb design for biomechanical comparison. Cartilage removal and subchondral bone disruption was accomplished using an orthopedic drill bit. Sample Population – 76 cadaver limbs. Methods - Cadaver PIPJs were drilled using a 3.5mm, 4.5mm or 5.5mm drill bit. Articular surfaces were digitally photographed and analyzed. Other paired PIPJs were arthrodesed using either the CR or the LI surgical technique. Implants consisted of a 3-hole DCP and two 5.5mm transarticular screws. Constructs were tested to failure in dorso-palmar/plantar and latero-medial in single cycle 3-point bending. The maximum load and yield load was measured and composite stiffness was calculated and statistically compared. Results - The LI technique had significantly greater mean yield load (11.3 ± 2.8 kN vs. 7.68 ± 1.1 kN, P=0.008) and mean maximum load (13.5 ± 3.1 kN vs. 10.1 ± 1.94 kN, P= 0.02) under latero-medial bending. Under dorso-palmar/plantar bending there was no statistical difference between the surgical approaches (P=0.5). The 4.5mm drill bit removed 42% ± 7.3 of the cartilage and disrupted subchondral bone. The LI technique had a decreased surgical time (19 ± 3 min.) when compared with the CR (31 ± 3 min.) technique. Conclusion – The LI technique results in a stronger composite as measured in 3-point bending, loaded to failure. Clinical Relevance – The LI surgical technique may be considered for clinical cases requiring arthrodesis of the PIPJ as there is no reduction in composite strength.

Master of Science / Department of Biology / Craig Paukert / The zebra mussel is an invasive bivalve that was first confirmed in Kansas in 2003, and has decreased zooplankton abundance and altered the aquatic community in other areas where it has invaded. However, little is known about its effects on the aquatic communities of warm-water Great Plains reservoirs. We analyzed zooplankton, benthic macroinvertebrate, and juvenile and small-bodied fish abundance in the littoral zone of an Eastern Kansas reservoir with an established zebra mussel population (El Dorado Reservoir) and a control reservoir without zebra mussels (Melvern Reservoir) for two years pre-zebra mussel invasion (2001-2002) and two years post-invasion (2008-2009). We found no difference in littoral zooplankton abundance between reservoirs across time, but abundance of some macroinvertebrate taxa increased, and abundance of juvenile Lepomis spp. and red shiners decreased in the littoral zone of El Dorado Reservoir in August of the post-zebra mussel invasion period in comparison to the control reservoir. We also analyzed abundance and condition of six adult reservoir fishes in El Dorado Reservoir and three control reservoirs in Eastern Kansas for ten years pre-zebra mussel invasion (1993-2002) and five years post-invasion (2004-2008). Adult white crappie abundance remained constant in El Dorado Reservoir but decreased in the control reservoirs during the post-zebra mussel invasion period, and condition of adult bluegill, white bass, and white crappie decreased in El Dorado Reservoir in the post-zebra mussel invasion period compared to the control reservoirs. Our findings suggest that zebra mussel invasion in El Dorado Reservoir may have affected some benthic macroinvertebrates, juvenile and small-bodied fishes, and adult fishes. We did not find evidence that zebra mussels have had substantial effects on the zooplankton community of El Dorado Reservoir. However, July-August zebra mussel veliger densities in El Dorado Reservoir averaged less than 12 veligers/L in four of the six post-zebra mussel invasion years. Additional research and long-term monitoring of zooplankton, macroinvertebrates, and fishes will be necessary to determine the full effects of zebra mussels on the aquatic communities of warm-water reservoirs throughout North America.

Weed seed contaminants in agricultural products from China in recent years have the potential for introducing new invasive plant species. Seeds of 169 weedy species from 39 families were collected from Chinese farmlands. Fifty-eight of these that are currently absent in Canada were evaluated. Two weed risk assessment (WRA) models (modified WRA+ secondary screen tool and weed elsewhere+ modified WRA+ secondary screen tool) rejected all invasive plant species and showed similar accuracy in non-invasvie plant species prediction based on 140 existing alien plant species in Canada, yet the second WRA model took significantly less time to conduct the evaluation. Fifty-five potential invasive species with various negative impacts in Chinese farmlands were rejected to enter Canada by the “weed elsewhere+ modified WRA+ secondary screen tool” model, including eight species that cause significant damage to Chinese farmlands. However, Anemone rivularis and Silene jenisseensis, which have no negative impacts in China, were also rejected. Seed germination characteristics among 18 Chinese weedy species were found with base temperatures for germination (Tb) varying from -2.5°C to 10.9°C, thermal time requirements to reach 50% germination (θ_50) ranging from 23.7 to 209.2℃*Day, and different optimal temperatures for germination, which may facilitate these species to cause different degrees of negative impacts in Canadian prairie provinces. An alien species would have a higher competitive advantage in resource uptake and space occupation than its congeneric with advantageous seed germination characteristics; otherwise it will be less competitive than its congeneric. In addition, plant functional traits that promote invasiveness would make an alien species more invasive. In conclusion, the “weed elsewhere+ modified WRA+ secondary screen tool” model is a fast and highly accurate way to screen out potential invasive species from Chinese environments, and is applicable to other environments with modification. Seed germination characteristics can be used to predict seasonal dynamics of weed seedling populations. The comparison of seed germination characteristics and other plant functional traits between alien plant and its congeneric weed from native areas provides a new way to evaluate the invasive potential of alien plant species.

Local infiltration analgesia (LIA) is a new technique for postoperative pain management following knee arthroplasty. LIA involves a long-acting local anesthetic (ropivacaine), a non-steroid anti-inflammatory drug (ketorolac) and epinephrine infiltrated into the knee joint during surgery and injected postoperatively via a catheter. In the first two studies, LIA was compared with placebo in unicompartmental (I) and total (II) knee arthroplasty. Postoperative pain levels, morphine consumption and the incidence of side effects were lower in the LIA groups. In addition, we found a shorter length of hospital stay in the LIA group following unicompartmental knee arthroplasty compared with placebo (I), while the time to home readiness was shorter in the LIA group following total knee arthroplasty (II). In this study, we found that the unbound venous blood concentration of ropivacaine was below systemic toxic blood concentrations in a sub-group of patients. In the third study, LIA was compared with intrathecal morphine for postoperative pain relief following total knee arthroplasty (III). Pain scores and morphine consumption were lower, length of hospital stay was shorter and patient satisfaction was higher in the LIA group. In the final study, we investigated the effect of minimally invasive surgery (MIS) compared with conventional surgery in unicompartmental knee arthroplasty (IV). Both groups received LIA. We found no statistically significant differences in postoperative pain, morphine consumption, knee function, home readiness, hospital stay or patient satisfaction. In conclusion, LIA provided better postoperative pain relief and earlier mobilization than placebo, both in unicompartmental and total knee arthroplasty. When compared to intrathecal morphine, LIA also resulted in improved postoperative pain relief and earlier mobilization. Minimally invasive surgery did not improve outcomes after unicompartmental knee arthroplasty, when both groups received LIA.

BACKGROUND:The rhizome, the original stem of land plants, enables species to invade new territory and is a critical component of perenniality, especially in grasses. Red rice (Oryza longistaminata) is a perennial wild rice species with many valuable traits that could be used to improve cultivated rice cultivars, including rhizomatousness, disease resistance and drought tolerance. Despite these features, little is known about the molecular mechanisms that contribute to rhizome growth, development and function in this plant.RESULTS:We used an integrated approach to compare the transcriptome, proteome and metabolome of the rhizome to other tissues of red rice. 116 Gb of transcriptome sequence was obtained from various tissues and used to identify rhizome-specific and preferentially expressed genes, including transcription factors and hormone metabolism and stress response-related genes. Proteomics and metabolomics approaches identified 41 proteins and more than 100 primary metabolites and plant hormones with rhizome preferential accumulation. Of particular interest was the identification of a large number of gene transcripts from Magnaportha oryzae, the fungus that causes rice blast disease in cultivated rice, even though the red rice plants showed no sign of disease.CONCLUSIONS:A significant set of genes, proteins and metabolites appear to be specifically or preferentially expressed in the rhizome of O. longistaminata. The presence of M. oryzae gene transcripts at a high level in apparently healthy plants suggests that red rice is resistant to this pathogen, and may be able to provide genes to cultivated rice that will enable resistance to rice blast disease.

BACKGROUND:Primary cilia are microtubule-based organelles that protrude from the cell surface. Primary cilia play a critical role in development and disease through regulation of signaling pathways including the Hedgehog pathway. Recent mouse models have also linked ciliary dysfunction to cancer. However, little is known about the role of primary cilia in breast cancer development. Primary cilia expression was characterized in cancer cells as well as their surrounding stromal cells from 86 breast cancer patients by counting cilia and measuring cilia length. In addition, we examined cilia expression in normal epithelial and stromal cells from reduction mammoplasties as well as histologically normal adjacent tissue for comparison.RESULTS:We observed a statistically significant decrease in the percentage of ciliated cells on both premalignant lesions as well as in invasive cancers. This loss of cilia does not correlate with increased proliferative index (Ki67-positive cells). However, we did detect rare ciliated cancer cells present in patients with invasive breast cancer and found that these express a marker of basaloid cancers that is associated with poor prognosis (Cytokeratin 5). Interestingly, the percentage of ciliated stromal cells associated with both premalignant and invasive cancers decreased when compared to stromal cells associated with normal tissue. To understand how cilia may be lost during cancer development we analyzed the expression of genes required for ciliogenesis and/or ciliary function and compared their expression in normal versus breast cancer samples. We found that expression of ciliary genes were frequently downregulated in human breast cancers.CONCLUSIONS:These data suggest that primary cilia are lost early in breast cancer development on both the cancer cells and their surrounding stromal cells.

The principle of competitive exclusion holds that the strongest competitor for a single resource can exclude other species. Yet in many systems, more similar species appear to stably coexist than the small number of limiting resources. Understanding how and when similar species can stably coexist has taken on new urgency in managing biological invasions and their ecological impacts. Recent theoretical advances emphasize the importance of predators in determining coexistence. The effects of predators, however, can be mediated by behavioral changes induced in their prey as well as by their lethality. In this dissertation, I ask how considering multiple trophic levels changes our understanding of how a grass invasion (Pennisetum ciliare) affects species diversity and dynamics in southeastern Arizona. In considering interactions with plant consumers, and with the predators of those consumers, this research reveals more general ecological processes that determine species diversity across biological communities. I first present evidence from a grass removal experiment in the field that shows increased emergence and short-term survival of native perennial plants without grass. This is consistent with Pennisetum ciliare causing the observed concurrent decline in native plant abundance following invasion. I then present results from greenhouse and field studies consistent with that suppression of native plants being driven primarily through resource competition rather than increased rodent granivory. Granivorous rodents do not solely function as consumers, however, because they cache their harvested seeds in shallow scatter-hoards, from which seeds can germinate. Rodents thus act also as seed dispersers in a context-dependent mutualism. The primary granivores in areas invaded by Pennisetum ciliare are pocket mice (genus Chaetodipus), which have a well-studied tendency to concentrate their activity under plant cover to avoid predation by owls. Because the dense canopy of the grass may provide safer refuge, I hypothesized the pocket mice may be directly dispersing native seeds closer to the base of the invasive grass. Such a behavior could increase the competitive effect of the grass on native plant species, further driving the impacts of the invasion. By offering experimental seeds dusted in fluorescent powder and tracking where the seeds were cached, I show that rodents do preferentially cache experimental seeds under the grass. This dispersal interaction may be more general to plant interactions with seed-caching rodents across semi-arid regions that are experiencing plant invasions. Finally, I ask how the predator avoidance behavior exhibited by these rodents affects their ability to coexist with one another. Not only could their diversity affect that of the plant community, but the effects of plant invasions can cascade through other trophic levels. Theoretical understanding of how similar predator avoidance strategy alters coexistence had not yet been developed, however. Instead of a field study, therefore, I modified a general consumer-resource model with three trophic levels to ask whether avoidance behavior by the middle trophic level alters the ability of those species to coexist. I found that more effective avoidance behavior, or greater safety for less cost, increased the importance of resource partitioning in determining overall niche overlap. Lowering niche overlap between two species promotes their coexistence in the sense that their average fitness can be more different and still permit coexistence. These results provide novel understanding of behavioral modifications to population dynamics in multi-trophic coexistence theory applicable to this invasion and more broadly.

Coastal Sage Scrub (CSS) is a low scrubland plant community native to the coasts of California, housing many threatened and endangered species. Due to the invasion of non-native plants, many areas of CSS have type converted to annual grasslands and the fire frequency has accelerated; fire in turn, may facilitate further invasion, leading to a loss of biodiversity. While many studies document post-fire succession in these communities, pre-fire data are rarely available for comparison, especially data on seedling emergence. I analyzed post-fire recovery of a type-converted grassland community, comparing seedling emergence data for the first and third year after fire to the three years preceding the fire. Non-native species abundances declined more after the fire than did native abundances. This pattern was still present in 2015, three years post-fire. Two native species, Amsinckia menziesii var. intermedia (Amsinckia) and Phacelia distans (Phacelia), were subjects of seed addition treatments pre-fire, but I found no evidence that past seeding increased their abundances post-fire. Amsincki did recover to its pre-fire density three years after the fire, while the density of Phacelia declined over 75% in both the year immediately post-fire and three years after the fire. However, a third native species, Lupinus bicolor (Lupinus), was both much more abundant and also more spatially widespread both immediately after the fire and two years later. This supports the hypothesis that Lupinus is stored in the soil seed bank and the fire may have given this species the opportunity to recover by lowering abundances of non-native competitors. This analysis will inform future conservation efforts by improving our understanding of how seed banks impact the post-fire recovery of native species.

Thesis (MSc)--Stellenbosch University, 2012. / ENGLISH ABSTRACT: Human-modified habitats form increasingly large components of landscapes, threatening biodiversity and creating challenges for conservation. In some cases altered habitats form entirely novel ecosystems that may support new combinations of species and species abundances, and create habitat space in otherwise transformed landscapes. In the Western Cape of South Africa, woody invasive species contribute to landscape-level habitat transformation and form novel ecosystems. Invasive Australian Acacia species are especially problematic in lowland areas where they create dense thickets and substantially transform both biotic communities and abiotic processes. Despite the prominence of Acacia thickets across the Western Cape, their ability to support native fauna is not well understood and the objective of this study was to assess the significance of Acacia thickets as habitat for the region’s avifauna. Birds were surveyed in Acacia thickets in the south-western Western Cape in three seasons to examine species richness, abundance and functional abundance. Furthermore, I examined the extent to which differences in patch-level vegetation structure alter bird communities. Between survey sites and seasons, significant variation was observed in assemblage richness, density, median body size and biomass. Variation in vegetation density, stem density, mean vegetation height and total canopy cover best explained variation in bird assemblages. Eighty species were estimated to utilize Acacia thickets and assemblages had a mean density of 7.78 birds per ha. The most abundant feeding guilds were the mixed feeders and insectivores. The median body size observed was 15.2 g and the body size frequency distribution of all species in Acacia spanned a similar range compared to the body size frequency distribution for the species list for the entire Western Cape. The mean biomass of bird communities was 0.224 kg per ha. Using data on bird density and biomass, Acacia thickets across the Fynbos Biome support and estimated average of over 21 million birds with a combined biomass of over 600 thousand kg. This study found that Acacia thickets in the Western Cape support a subset of the region’s birds with the most abundant species being small mixed feeders, which are also frequently urban-adapted. Compared with other habitat types, Acacia support bird assemblages with moderate species richness and density. This study shows that Acacia thickets, as a novel habitat, provide a significant amount of habitat space in a highly transformed landscape and highlights the need for comprehensive evaluation of altered habitats before assumptions are made about their ecological value. / AFRIKAANSE OPSOMMING: Getransformeerde habitatte maak vermeerderend groot deel uit van die omgewing, dit bedreig biodiversiteit en skep groter uitdagings vir bewaring. In sommige gevalle vorm hierdie getransformeerde habitatte geheel nuwe ekosisteme wat moontlik nuwe kombinasies van spesies en spesie volopheid kan onderhou. Verder skep nuwe ekosisteme habitat spasie in anders veranderde landskappe. In die Wes-Kaap van Suid-Afrika dra die Australiese Acacia indringer spesies is veral problematies in laagliggende areas, aangesien dit digte ruigtes vorm, asook beide die biotiese gemeenskappe en die abiotiese prosesse aansienlik transformeer. Ten spyte daarvan dat daar volop Acacia ruigtes in die WesKaap is, word min verstaan van hul vermoë om inheemse fauna te onderhou. Die hoofdoel van hierdie studie was om die belang van Acacia ruigtes as habitat vir die area se voëllewe te bepaal. Voël-opnames in die suidwestelike dele van die Wes-Kaap is gedoen in Acacia ruigtes oor drie seisoene, om spesierykheid, volopheid en funksionele volopheid te ondersoek. Verder is die mate waartoe verskille in die plotte van die plantegroei struktuur, die voëlgemeenskappe verander, geondersoek. Daar was aansienlike variasie waargeneem in die spesiesamestelling rykheid, voorkoms digtheid, mediaan liggaamsgrootte en biomassa van die voëls tussen die onderskeie voëlopnaam plotte en die seisoene. Die variasie in plantegroei digtheid, stam digtheid, mediaan plantegroeihoogte en totale kroonbedekking verduidelik hierdie variasie in spesiesamestelling die beste. Tagtig voëlspesies Acacia ruigtes benut en die populasiesamestelling het ‘n gemiddelde digtheid van 7,78 voëls per ha. Die mees algemene voel-voeding-guldes was die gemengde-voedsel-vreters en insekvreters. Die median liggaamsgrootte waargeneem was 15,2 g en die liggaamsgrootte frekwensieverspreiding van alle spesies in Acacia ruigtes is ooreenkomstig met die liggaamsgrootte frekwensieverspreiding vir die spesielys vir die hele Wes-Kaap. Die gemiddelde biomassa van voel gemeenskappe was 0.224 kg per ha. Acacia ruigtes oor die fynbosbioom wat ‘n geskatte gemiddelde van meer as 21 miljoen voels ondersteun, met ‘n gesamentlike biomassa van meer as 600 duisend kg. Hierdie studie het bevind dat Acacia ruigtes in die Wes-Kaap ‘n onderafdeling van die streek se voels ondersteun, met die mees algemene spesies as die klein gemengde-voedsel-vreters, wat ook dikwels stedelik aangepas is. In vergelyking met ander habitattipes ondersteun Acacia ruigtes voel samestellings met matige spesierykheid en digtheid. Hierdie studie toon dat die Acacia ruigtes, as ‘n nuwe habitat, ‘n beduidende hoeveelheid habitat ruimte in ‘n hoogs getransformeerde omgewing skep en beklemtoon die behoefte aan ‘n omvattende evaluering van veranderde habitatte, voor aannames gemaak word oor hul ekologiese waarde.

Thesis (MSc)--Stellenbosch University, 2012. / ENGLISH ABSTRACT: This thesis investigates the invasiveness and current status of two Acacia species recently identified as invaders in South Africa in order to determine the feasibility of their eradication. Australian acacias are among South Africa’s worst invasive species and many have had widespread damaging impacts on native ecosystems. In addition, several Acacia species still exist as small isolated populations in the country and have been targeted for eradication in order to prevent potential widespread impacts. This work assesses Acacia implexa (Chapter 2) and Acacia stricta (Chapter 3) as potential eradication targets by quantifying the extent of their invasion in South Africa, assessing the risk they pose to the country and evaluating the feasibility of their eradication based on estimated costs of clearing. Results of formal risk assessments show that both A. implexa and A. stricta should be considered high risk species, and bioclimatic model predictions indicate that both species have large potential ranges in South Africa. Detailed population surveys found that A. implexa and A. stricta each occur at several distinct localities all in the Western Cape Province. Acacia implexa populations were found at three sites (Tokai, Wolseley and Stellenbosch) where they have densified by means of vegetative suckering allowing A. implexa to outcompete native vegetation. No evidence of large seed banks of A. implexa were found, however vigorous resprouting following damage makes the control of A. implexa difficult. Acacia stricta was found at nine localities all in the Knysna area of the Garden Route, where populations are spreading along disturbed roadsides in plantations. Acacia stricta produces large amounts of seeds and can accumulate large seed banks. Seed spread is most likely due to large-scale soil movement by road maintenance vehicles which can easily lead to the establishment of new populations. We therefore used a predictive risk mapping approach based on the association of A. stricta to roadsides and disturbed plantations to enable effective searching to detect all infestations of A. stricta. Based on the high risk of both species and the limited range sizes of the currently known populations, we recommend that A. implexa and A. stricta remain targets for eradication. Management strategies proposed for these species (Chapter 4) include clearing on an annual (in the case of A. stricta) or biannual (for A. implexa) basis to prevent seed production, and targeted awareness campaigns at a national scale to determine whether our current knowledge of the extents of A. implexa and A. stricta are accurate. This work has shown that detailed assessments of species at intermediate stages of invasion is an important initial step in an eradication attempt, and better understanding of species specific invasion characteristics can help to improve management and potentially increase the probability of success of eradication. / AFRIKAANSE OPSOMMING: Hierdie tesis ondersoek die invasieve en die huidige status van twee Acacia spesies onlangs geïdentifiseer as indringers in Suid-Afrika ten einde die lewensvatbaarheid van hul uitwissing om te bepaal. Australiese akasias is onder Suid-Afrika se ergste indringerspesies en baie het wydverspreide skadelike impak op die inheemse ekosisteme. Verder het verskeie Acacia spesies bestaan nog steeds as 'n klein geïsoleerde bevolkings in die land en wat geteiken is vir uitwissing in om moontlike grootskaalse impakte te voorkom. Hierdie werk beoordeel Acacia implexa (Hoofstuk 2) en Acacia stricta (Hoofstuk 3) as 'n moontlike uitwissing teikens deur die kwantifisering van die omvang van hul inval in Suid-Afrika, die beoordeling van die risiko wat hulle inhou vir die land en die evaluering van die haalbaarheid van hul uitwissing op grond van beraamde koste van die wiele ry. Resultate van formele risikobepalings toon dat beide die A. implexa en A. stricta moet oorweeg word om 'n hoë risiko spesies, en bioclimatic model voorspellings dui daarop dat beide spesies het 'n groot potensiaal bereik in Suid-Afrika. Uitgebreide bevolkings opname gevind dat A. implexa en A. stricta elk by verskeie afsonderlike plekke in die Wes-Kaap voorkom. Acacia implexa is op drie plekke (Tokai, Wolseley en Stellenbosch) gevind, waar hulle deur middel van vegetatiewe suier densified en inheemse plantegroei oorwin het. Geen bewyse van groot nageslag banke van A. implexa is gevind, maar in kragtige resprouting volgende skade maak die beheer A. implexa moeilik is. Die Acacia stricta is op nege plekke in die Knysna-omgewing van die Tuinroete, waar die bevolkings verspreiding langs die versteurde paaie in plantasies. Acacia stricta produseer groot hoeveelhede saad en kan versamel groot saadbanke. Saad versprei is waarskynlik te danke aan grootskaalse grond beweging deur die instandhouding van paaie voertuie wat kan lei tot die vestiging van nuwe bevolkings. Ons het dus 'n voorspellende risiko kartering benadering wat gebaseer is op die vereniging van A. stricta aan paaie en versteurde plantasies in staat te stel om doeltreffend te soek alle besmettings van A. stricta op te spoor. Gegrond op die hoë risiko van beide spesies en die beperkte reeks groottes van die bevolking wat tans bekend is, beveel ons aan dat A. implexa en A. stricta bly teikens vir uitwissing. Bestuurstrategieë vir hierdie spesies (Hoofstuk 4) voorgestel word, sluit in die skoonmaak op 'n jaarlikse (in die geval van A. stricta) of die halfjaarlikse (vir A. implexa) basis van die saad produksie, en geteikende bewusmakingsveldtogte om te voorkom dat 'n nasionale skaal om te bepaal of ons huidige kennis van die omvang van A. implexa en A. stricta akkuraat is. Hierdie werk het getoon dat uitgebreide aanslae van spesies op intermediêre fases van die inval is 'n belangrike eerste stap in 'n poging van die uitwissing, en 'n beter begrip van spesies spesifieke inval eienskappe kan jou help om te verbeter en potensieel verhoog die waarskynlikheid van sukses van die uitroeiing nie.