Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

Cryosurgery is the destruction of undesired biological tissues by freezing. Modern cryosurgery is frequently performed as a minimally-invasive procedure, where multiple hypodermic, needle-shaped cryoprobes are inserted into the target area to be treated. The aim of the cryosurgeon is to maximize cryoinjury within a target region, while minimizing damage to healthy surrounding tissues. There is an undisputed need for temperature-field reconstruction during minimally invasive cryosurgery to help the cryosurgeon achieve this aim. The work presented in this thesis is a part of ongoing project at the Biothermal Technology Laboratory (BTTL), to develop hardware and software tools to accomplish real-time temperature field reconstruction. The goal in this project is two-fold: (i) to develop the hardware necessary for miniature, wireless, implantable temperature sensors, and (ii) to develop mathematical techniques for temperature-field reconstruction in real time, which is the focus of the work presented in this thesis. To accomplish this goal, this study proposes a computational approach for real-time temperature-field reconstruction, combining data obtained from various sensing modalities such as medical imaging, cryoprobe-embedded sensors, and miniature, wireless, implantable sensors. In practice, the proposed approach aims at solving the inverse bioheat transfer problem during cryosurgery, where spatially distributed input data is used to reconstruct the temperature field. Three numerical methods have been developed and are evaluated in the scope of this thesis. The first is based on a quasi-steady approximation of the transient temperature field, which has been termed Temperature Field Reconstruction Method (TFRM). The second method is based on analogy between the fields of temperature and electrical potential, and is thus termed Potential Field Analogy Method (PFAM). The third method is essentially a hybrid of TFRM and PFAM, which has shown superior results. Each of these methods has been benchmarked against a full-scale finite elements analysis using the commercial code ANSYS. Benchmarking results display an average mismatch of less than 2 mm in 2D cases and less than 3 mm in 3D cases for the location of the clinically significance isotherms of -22°C and -45°C. In an advanced stage of numerical methods evaluation, they have been validated against experimental data, previously obtained at the BTTL. Those experiments were conducted on a gelatin solution, using proprietary liquid-nitrogen cryoprobes and a cryoheater to simulate urethral warming. The design of the experiment was aimed at creating a 2D heat-transfer problem. Validation results against experimental data suggest an average mismatch of less than 2 mm, for the hybrid of TFRM + PFAM method, which is of the order of uncertainty in estimating the freezing front location based on ultrasound imaging.

Master of Science / Department of Biology / David C. Hartnett / Invasive plants pose a global threat by changing natural communities and ecosystems in ways that may be irreversible. Marrubium vulgare L. (horehound), native to Eurasia, is an invasive exotic plant found throughout the United States. Little is known about M. vulgare in the U.S. and this study aimed to understand the basic biology, habitat, and population dynamics of M. vulgare in its invasive habitat as well as the role of disturbance in the invasions. Wind Cave National Park (WCNP), an area comprising ponderosa pine and mixed grass prairie vegetation types, was used as the site for this study. In a GPS and GIS mapping study, M. vulgare was found to be significantly associated with prairie dog towns, an Aristida purpurea - Dyssodia papposa (threeawn and fetid marigold) vegetation community (a vegetation type found exclusively on prairie dog towns), and certain types of loamy soils. M. vulgare was rarely found off of prairie dog towns and then only in other disturbed areas such as bison trails or tree falls. Population studies showed M. vulgare populations were mostly stable or slightly decreasing in density (though not significantly) from 2010 to 2011; however, a few of the populations did increase dramatically in density from 2010 to 2011. M. vulgare populations existed in high densities (78.3-322.9 ramets/m2) and in low densities (0.1-2.2 genets/m2) throughout WCNP. Disturbances including prairie dog burrows, bison trails, prairie dog and bison presence, mowing, and percent cover of bare ground were measured in relation to population dynamics. While M. vulgare populations were disturbance dependent, there was no clear relationship between disturbances and population dynamics. Examination of M. vulgare life history traits found that while M. vulgare had relatively low biomass allocation to reproduction as compared to native perennial prairie species, M. vulgare produced an extremely high number of small seeds (estimated 1487/plant). Seedling establishment rates were also high. While not quantified, M. vulgare appears to be effectively dispersed through bison epizoochory. These results help to inform management of M. vulgare populations: minimizing disturbance, decreasing propagule supply, and minimizing dispersal may help to reduce M. vulgare invasions.

M.Tech. (Fine Art) / Unemployment and the crime levels which escalate as a result of it, are very realistic social problems in South Africa and training for job skills and entrepreneurship has become a priority. This study identifies the use of invasive plant fibres as a viable resource for the hand papermaking industry and the development of a new cultural industry. The research' funded by the National Research Foundation (NRF) and the Technikon Research Committee (TRC) has been implemented in an established poverty relief programme called Phumani Paper', which creates jobs especially in rural or impoverished sectors through technology transfer and training. A curriculum is currently being developed for current and future participants of this programme to obtain qualifications in hand papermaking. An investigation has been undertaken to define suitable invasive plant species for the purpose of this research. The investigation included the extent of invasive encroachment, plant identification, methods of control and government legislation. Initially water hyacinth (eichhomia crassipes) was identified as a suitable fibre, but because Phumani Paper supports 21 small paper businesses in seven provinces, research had to be undertaken on several different species found in each of the regions. Species such as moth catcher (Araujia sericifera), milkweed (Asclepias fruticosa), pampas grass (Cortadeira selloana), giant reed (Arundo donax) and bugweed (Solanum mauritianum) have been identified as viable fibres for the hand papermaking industry, due to their fibrous characteristics...

The Rio Grande cichlid (Herichthys cyanoguttatus) has been established in the Greater New Orleans Metropolitan Area (GNOMA) for at least 20 years. It is often the most common fish species in urban canals and has also been found in natural waterways outside of the GNOMA. The effects and potential for further spread of H. cyanoguttatus is uncertain. My research addressed how extensive the cichlids spread in the GNOMA, how H. cyanoguttatus interacted with L. macrochirus, a native fish, and what salinity tolerance this species has. Surveys on Lake Pontchartrain and in the GNOMA indicated that H. cyanoguttatus is well established in urban habitats. These surveys also indicate that H. cyanoguttatus has spread rapidly into Bayou Saint John and City Park in recent years and that H. cyanoguttatus populations were relatively unaffected by Hurricanes Katrina and Rita. There is little evidence that H. cyanoguttatus has become established outside of the GNOMA, but this lack of persistence cannot be explained by abiotic variables I measured. Salinity may be a factor and this was measured in growth trials of H. cyanoguttatus. Salinities up to 16 ppt, however, had no significant effect on H. cyanoguttatus growth. Interspecific behavioral experiments were conducted to examine potential biotic interactions with native fish species. Prior resident trials indicated that H. cyanoguttatus was aggressive whether holding territory or not, and that native bluegill (Lepomis macrochirus) was only aggressive while holding territory. Feeding experiments were performed to examine biotic interactions between H. cyanoguttatus and L. macrochirus. Lepomis macrochirus grew faster than H. cyanoguttatus when inter- and intraspecific trials were compared; however, no significant growth differences were seen when trials were structured with L. macrochirus as prior residents. The major findings of my research are a high salinity tolerance of H. cyanoguttatus, a potential mechanism for H. cyanoguttatus affecting native fishes through aggression as residents and invaders, and the presence of H. cyanoguttatus throughout the GNOMA, before and after the hurricanes.

Each year in the United States, approximately 81 million individuals receive surgeries in which .1% to .2% (20,000 to 40,000/20 million) experience Anesthesia Awareness (AA). More than 50% of the AA cases result in mental distress or Posttraumatic Stress Disorder (PTSD). Because the percentage of AA cases among surgeries makes it appear to be a rare occurrence, and because it has received rather limited research attention, I decided to undertake an interpretative phenomenological analysis to discover AA clients’ perceptions of their counseling experience, and encourage development of therapeutic interventions to meet their needs. The broad research question for my study was how do clients perceive their experience of counseling for trauma related to AA? The context was provided by a review of the literature which focused on trauma and PTSD, AA, clients’ perceptions of counseling, counseling for trauma, and counseling for PTSD. Semi-structured interviews were used to collect data which then was coded to identify emerging themes which were then clustered. The clustered themes were used to answer the broad and specific research questions. Based on the findings of my study, the theme of relational factors of counselors most often emerged as helpful to counseling (e.g., Rogerian- congruence, unconditional positive regard, accurate empathic understanding), whereas, the therapy process, external barriers, and PTSD symptoms most often emerged as hindering to counseling. Implications for counselors and counselor educators include increased understanding and insight regarding AA survivors and the role of relationship when counseling this population which may lead to more effective interventions and expanded professional roles to work with this population.

The deciduous forests of northeastern United States are currently experiencing an invasion of the exotic plant species Japanese barberry (Berberis thunbergii). This recent and rapid invasion leads to rising concern about its potential threats to native species as well as natural ecosystems, demanding a better understanding of its invasion mechanisms and potential responses to climate change. Unfortunately, few studies have been conducted to understand the influence of climate on the growth of B. thunbergii, largely because of the absence of long-term growth records. In this study we demonstrate growth rings of B. thunbergii are annually resolved and crossdatable. The first ring-width chronology of B. thunbergii was therefore developed using samples collected from the Black Rock Forest (BRF), New York. Climate-growth relationship analysis indicates the growth of B. thunbergii in the BRF is positively correlated with precipitation in prior October, current February and May–August, but is negatively correlated with current March precipitation. The growth of B. thunbergii is also negatively correlated with temperatures in prior winter (November–January) and current summer (June–July), but is positively correlated with current spring temperature (March–May). These dendrochronological results on B. thunbergii, together with further physiological studies, will improve our understanding on how the growth of this invasive species is affected by local climate dynamics, as well as the long-term invasion potential that is tied to its responses to climate change.

This thesis examines the contribution of a non-indigenous red alga, Mazzaella japonica, to wrack subsidies in Baynes Sound, British Columbia, and the effects of its removal by a commercial beach-cast harvest. Field and laboratory work was conducted to determine: 1) How large wrack inputs are in terms of biomass and spatial extent within the harvest region, and what proportion of this is comprised of M. japonica; 2) how wrack characteristics influence associated macrofauna communities; 3) if there is any detectable effect of beach-cast harvesting on either the wrack characteristics or macrofauna communities; and 4) if M. japonica provides a food source for native invertebrate consumers within the subtidal and supralittoral zones. Field surveys conducted from November 2014 through March 2015 found that wrack biomass within the harvest region could reach as much as 853 kg (±173 SD) per meter of shoreline, and cover up to 35 m2 (± 3 SD) of beach surface within this area. The macrophyte composition of the wrack was dominated by M. japonica, which accounted for 90% of the identifiable macrophyte biomass on average. Wrack in the later stages of decomposition hosted the most speciose and diverse assemblages of macrofauna, though community composition also differed among collection sites and with depth of the wrack. Though we were limited in our ability to disentangle the effects of beach-cast harvesting due to a concentration of effort at one site, we failed to detect any large influence on wrack biomass or macrofauna communities. Harvesting does, however, appear to be associated with a greater area of wrack cover and decreased mean depth. Stable isotope mixing models estimated that M. japonica contributed no more than 22% and 17% on average to the diets of supralittoral and subtidal consumers respectively, despite its overwhelming dominance in both environments. These results suggest that the non-indigenous red alga may experience a reprieve from herbivory within the subtidal environment. A lack of consumption within the supralittoral zone could influence nutrient cycling on recipient beaches and increase propagule pressure in the surrounding regions. Results from these studies are intended to help inform the management of M. japonica and its commercial harvesting. Combined, they indicate that this non-indigenous seaweed does not provide a substantial subsidy in the form of food provision for resident invertebrates. Furthermore, the commercial removal of M. japonica is small compared to the total biomass available, and had no detectable effect on the wrack-associated macrofauna communities examined. / Graduate / 2017-08-19 / jjulin.holden@gmail.com

Les méthodes non invasives d'évaluation des lésions tissulaires hépatiques les plus utilisées et les mieux validées sont l'élastométrie et le FibroTest. La stéatopathie non-alcoolique (NAFLD) est devenue la forme la plus fréquente de maladie hépatique. Différentes études suggèrent que la NAFLD est associée à un risque accru de mortalité, en particulier d'origine cardiovasculaire. Les objectifs de cette thèse étaient 1) de mieux définir certaines limites des méthodes non invasives d'évaluation de la fibrose hépatique; 2) d'évaluer la valeur pronostique du FibroTest et d'un biomarqueur de stéatose, le SteatoTest chez les patients ayant un diabète et/ou une dyslipidémie. Le travail réalisé a permis de montrer une variabilité interobservateur notable de l'élastométrie entre deux opérateurs expérimentés dans l'hépatite chronique virale C. La stéatose du foie, estimée par le SteatoTest, a été identifiée comme un facteur indépendant associé à la surestimation de la fibrose du foie par l'élastométrie chez les sujets ayant un diabète de type 2. Nous avons également mis en évidence une variabilité du test APRI et l'impact de l'activité nécrotico-inflammatoire sur ce test dont la formule comprend l'aspartate transaminase exprimée en multiple de la normale dans l'hépatite chronique virale C. Chez des patients à haut risque de NAFLD, nous avons pu démontrer la valeur pronostique à 10 ans du FibroTest et du SteatoTest, pour prédire la mortalité globale indépendamment des facteurs métaboliques. Le FibroTest était également prédictif de la mortalité d'origine hépatique et de l'incidence des complications cardiovasculaires et le SteatoTest de la mortalité d'origine cardiovasculaire / Several non-invasive methods have been proposed to replace liver biopsy. Transient elastography and FibroTest are the most widely used and best validated non-invasive methods to assess liver fibrosis. Subjects with metabolic disorders such as type-2 diabetes or dyslipidemia, have a high risk of non-alcoholic fatty liver disease (NAFLD). Evidence was previously provided to indicate that NAFLD is associated with an increased risk of cardiovascular disease and overall mortality. The aims of this thesis were. 1) to evaluate the main limitations of non-invasive methods to assess liver fibrosis. 2) to evaluate the prognostic value of liver biomarkers, such as FibroTest and SteatoTest, in patients with type-2 diabetes and/or dyslipidemia. We demonstrated a marked interobserver variability of transient elastography between two experienced operators in chronic hepatitis C. Hepatic steatosis, estimated by SteatoTest, was identified as an independent factor associated with an overestimation of liver fibrosis by transient elastography in patients with type-2 diabetes. We could also show the variability of the APRI test, based on the expression of aspartate aminotransferase relative to the upper limit of normal and the risk of overestimating fibrosis stage by this test due to necro-inflammatory activity in chronic hepatitis C. We reported that FibroTest and SteatoTest had a 10-year prognostic value for prediction of overall mortality independently of metabolic factors in patients at high risk of NAFLD. FibroTest was also predictive of liver-related death and incidence of cardiovascular events. In addition, SteatoTest had a prognostic value for cardiovascular-related death.

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