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Important reactions in the environment often occur at the interface between a mineral surface and aqueous phase. Reactions occurring at this interface often control the uptake or release of harmful components resulting in the geochemical cycling of elements in the environment. Additionally, minerals are commonly used in the remediation of contaminated areas, where similar chemistry occurs at their interfaces. Thus, studies of the chemistry of these interfaces are essential to our understanding of complex environments. Many of these processes are controlled by electron transfer reactions between adsorbates and the mineral interface, and it is here where this research presented will concentrate. The studies in this thesis key in on redox chemistry on various environmentally relevant iron minerals, including ferrihydrite, pyrite, and amorphous iron sulfide. A large portion of this body of work is dedicated to the understanding of the surface mediated reaction between chromate (Cr(VI)) and arsenite (As(III)). Both of these species are present in the environment and are detrimental to human health. Using in- and ex-situ experiments we have monitored the coupled redox transformation of Cr(VI) and As(III) to chromite (Cr(III)) and arsenate (As(V)). Quantum mechanical modeling was used to support the experimental studies of this novel redox chemistry. The reaction was monitored in situ, using attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR), on the surface of the iron oxyhydroxide, ferrihydrite, at various solution pH values by following vibrational modes unique to Cr(VI), As(III), and As(V). At pH < 9 we observed an initial growth of Cr(VI) vibrational modes due to adsorption, followed by the simultaneous decrease in Cr(VI) vibrational modes and increase in As(V) vibrational modes. Ex situ analysis of the reaction products via X-ray absorption spectroscopy (XAS) and X-ray photoelectron spectroscopy (XPS) indicated that there was an increase in the percentage of reaction products as the pH decreased. Quantum mechanical calculations were completed to model the reaction of Cr(VI) and As(III) on the ferrihydrite surface by analyzing differences in geometric and electronic structural changes and thermodynamic preferences. The results indicate that Cr(VI) and As(III) adsorbed physically separated from each other is not only thermodynamically favorable but results in changes in As(III)-Fe and Cr(VI)-Fe atomic distances, towards those characteristic of As(V)-Fe and Cr(III)-Fe. Thus a mechanism where electron transport occurs through bulk states is plausible. Additionally, natural bond order analysis reveals a redistribution of electron density away from the Cr(VI) atomic center upon adsorption, indicating probable changes in Cr(VI) reduction potential. The electrochemical reduction of Cr(VI) on three surfaces, ferrihydrite, titanium dioxide, and aluminum oxides, indicate that Cr(VI) reduction potential is surface dependent, an observation that has significance for redox chemistry in the environment. The interaction of ferric, Fe(III), with iron sulfide surfaces (during and after coal mining activities) contributes to the detrimental environmental problem known as acid mine drainage (AMD). We investigated whether Fe(III) chelating siderophores could be used to suppress the oxidation of iron sulfide surfaces and the resulting AMD chemistry. The exposure of the iron sulfide, pyrite, to the siderophore, desferrioxamine B (DFOB) at initial pH values of 3, 6, and 8 under oxic conditions showed a significant decrease in the rate of dissolution of pyrite: decreases of 43.7%, 37.5% and 78.4%, respectively. An even greater decrease in pyrite oxidation was observed when DFOB was present in anoxic conditions, specifically 56.1%, 74.4% and 91.5%, at pH 3, 6 and 8, respectively. We further compared the rate of dissolution between DFOB and another siderophore, enterobactin, which is a stronger chelator of Fe(III). The presence of enterobactin suppressed pyrite oxidation more than DFOB, consistent with the contention that inhibiting the interaction of Fe(III) with pyrite will decrease the oxidation of the mineral. We also analyzed the exposure of the pyrite surface to DFOB using ATR-FTIR, to determine if any surface chelation occurs. We found that when Fe(III) is present on the pyrite surface, DFOB adsorbs to the surface via hydroxamate groups, similar to the aqueous phase spectra of DFOB-Fe(III) complex. In contrast the spectra do not exhibit hydroxamate vibrational modes when Fe(III) was not initially present on the pyrite surface and in this circumstance the spectra resembled that of aqueous phase unchelated DFOB. Taken together the results showed that siderophore inhibited pyrite oxidation by chelating Fe(III) present on the pyrite surface and in solution. Finally, the reduction of NO(g) to NH3/NH4+ with amorphous iron sulfide (FeS) was studied. The exposure of NO gas to a suspension of FeS solid resulted in the conversion of 2.3% NO(g) to the reaction product ammonia (NH3), which was found to grow over time, while the exposure of NO(g) to water (in the absence of mineral) resulted in no NH3 formation. Additionally, we completed in situ analysis of NO exposure to FeS as a function of water concentration using ATR-FTIR. The exposure of NO to an aqueous paste of FeS or a FeS film (with adsorbed H2O), resulted in the adsorption of NO to the FeS surface and the subsequent production of NH3, as indicated by N-H vibrational modes. In contrast, the removal of all water, via thermal desorption from the film, resulted in the adsorption of NO but did not show vibrational modes consistent with the formation of NH3. We conclude that the presence of H2O, as a source of protons, and a FeS surface, as a source of electrons, results in the transformation of NO to NH3 via a heterogeneous reaction. This result has important implications towards remediation of NOx gases and mechanisms of prebiotic synthesis of NH3. In summary, the research presented expands our understanding of redox reactions at mineral interfaces in the environment. The work herein aims to inform and aid in the development of remediation methods for arsenic and chromium, the formulation of methods to inhibit the production of acid mine drainage, and develop our understanding of toxic NOx gas reduction on surfaces. / Chemistry

One chemoautotrophic origin of life theory posits the abiotic formation of alkyl thiols as an initial step to forming biomolecules and eventually a simple chemoautotrophic cell. The premise of this theory is that a recurring reaction on the charged surfaces of pyrite served as a primordial metabolism analogous to the reductive acetyl-CoA pathway (Wächtershäuser 1988) that was later enveloped by a primitive cellular membrane. Alkyl thiols have not previously been identified in terrestrial hot springs as unequivocally abiogenic, but they have been produced in the laboratory under hydrothermal conditions in the presence of a catalyst. I analyzed the dissolved gas content of several hot springs and conducted sterile laboratory experiments in order to evaluate the abiogenic formation of methanethiol (CH3SH), the simplest of the alkyl thiols. Specifically of interest was Cinder Pool, an acid-sulfate-chloride hot spring in Yellowstone National Park. This spring is unusual in that it contains a subaqueous molten sulfur layer (~18 m depth) and thousands of iron- vii sulfur-spherules floating on the surface, which are created by gas bubbling through the molten floor of the spring. This material could potentially serve as a reactive and catalytic surface for abiogenic CH3SH formation in Cinder Pool. Gas samples were collected from Cinder Pool and an adjacent hydrothermal feature in fall of 2011 using the bubble strip method. Two samples contained measurable quantities of CH3SH and other organic sulfur gases, with concentrations of all gases generally higher at the bottom of the pool. Laboratory microcosm experiments were conducted to replicate these findings in a sterile environment. Analog Cinder Pool water was injected into serum bottles containing different iron-sulfur compounds, including cinders collected from the pool itself, as catalytic surfaces for the CH3SH generating reaction. The bottles were then charged with hydrogen (H2), carbon dioxide (CO2), and carbon disulfide (CS2) as reaction gases and incubated for a week at temperatures between 60 and 100oC. Bottles used either powdered FeS, FeS2 (pyrite) or cinder material as a catalytic surface, and all of these surfaces were capable of catalyzing CH3SH formation. In bottles without imposed CS2, however, cinder material was the only surface that produced any detectable CH3SH. While CH3SH is central to the autotroph-first theory and has been synthesized in the laboratory (e.g. Heinen and Lauwers 1996), it has not previously been observed to form abiotically in natural systems. I have identified CH3SH in a natural hydrothermal feature where it is unlikely to have formed secondary to microbial activity, and I have duplicated these field findings in sterile laboratory experiments using the cinders as a reactive surface for formation. / text

Ce travail de thèse avait pour objectif de développer une méthode basée sur l’étude de la composition isotopique du soufre (δ 34S) permettant de déterminer l’origine, biotique/abiotique, des sulfures de fer au sein des couches de produits de corrosion (CPC). Puis, il s’agissait d’appliquer la méthodologie développée à des systèmes réels afin de déterminer les mécanismes de formation de ces sulfures de fer. Des méthodes d’analyse isotopique du soufre adaptées aux liserés de sulfures de fer micrométriques observés dans les systèmes réels ont été développées en nanoSIMS et ToF-SIMS. L’étude de sulfures de fer formés en milieu carbonaté anoxique en présence, ou non, de bactéries sulfato-réductrice a permis de valider l’emploi de ces méthodes pour la détermination de l’origine des sulfures de fer. L’application de ces méthodes isotopiques couplées à la caractérisation des sulfures de fer dans les systèmes réels a mis en évidence 2 faciès. Le faciès 1 pour lequel les sulfures de fer sont situés en externe de la CPC. Ils résultent de la migration des ions Fe2+ produits au niveau du métal jusqu’aux zones riches en ions S2- d’origine biotique. Les vitesses de corrosion y sont inférieures à 20 μm/an pour les systèmes de laboratoire et à 5 µm/an pour les objets archéologiques. Et le faciès 2 pour lequel la forte présence de phases conductrices dans la CPC entraîne une délocalisation des électrons, conduisant à la migration des ions S2- d’origine biotique vers le métal où ils précipitent sous forme de sulfures de fer. Ce faciès présente de fortes avancées de corrosion locales (200 µm) qui seraient dues à l’accumulation de phénomènes de corrosion par les chlorures et de biocorrosion. / The first goal of this project was to develop a methodology based on the study of the sulfur isotopic composition enabling the determination of iron sulfides origin, biotic or abiotic, within the corrosion products layers (CPL). Then, the aim was to apply this methodology to real corrosion systems in order to determine the mechanisms of iron sulfides formation. Sulfur isotopic analyses methodologies, adapted to micrometric iron sulfides layers observed in real corrosion systems, were developed in nanoSIMS and ToF-SIMS. The study of iron sulfides formed in anoxic carbonated medium with or without sulphate-reducing bacteria validated the use of these methods for the determination of iron sulfides origin. The application of these methods coupled with the precise characterization of irons sulfides formed in the real corrosion systems show two kind of corrosion pattern. In pattern 1, the iron sulfides are localized in the external part of the CPL. They result from the Fe2+ migration from the metal surface to areas rich in biotic S2-. In this pattern, corrosion rates are lower than 20 μm/year for laboratory systems, and lower than 5 μm/year for archaeological objects. In pattern 2, the large presence of conductive phases in the CPL results in the delocalization of electrons, and so a disequilibrium of the charges at the metal’s surface. That leads to the migration of biotic S2- in the CPL till the metal where they precipitate in iron sulphides. This pattern shows high corrosion rates (~100 μm/an) that might be resulting from the accumulation of biocorrosion and chloride corrosion mechanisms.

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