As ligações de hidrogênio (LH), fundamentais na determinação da estrutura da água, proteínas, etc., são muito importantes no reconhecimento molecular e nos mecanismos de reações enzimáticas. A determinação da energia das LHs intramoleculares em proteínas e intermoleculares entre uma proteína e o solvente água, porque fornece informações sobre a estrutura secundária, terciária e quaternária das proteínas. Um método para quantificar e qualificar as LHs foi desenvolvido utilizando critérios de distância, geométricos e energéticos a partir das trajetórias obtidas por simulações de dinâmica molecular. O método foi testado com o monômero de uma fosfolipase A2 homodimérica, sem atividade catalítica, isolada do veneno da Bothrops asper(BaspMT-II). No dímero, a análise das LHs mostrou que elas são também essenciais na manutenção da estrutura quaternária. Essa análise permitiu identificar movimentos do tipo dobradiça acompanhados da formação transitória, na interface dimérica, de LHs controladas pelo triptofano na posição 77. Esses movimentos podem estar associados à ação danosa às membranas, uma vez que podem promover a inserção da região C-terminal na membrana. Estudos prévios mostraram que o peptídeo sintético (3Y codificado pelos aminoácidos 115-129 da BaspMT-II) apresenta atividade bactericida e citolítica. Um outro peptídeo (3W), mutante de 3Y, no qual três resíduos tirosina são substituidos por triptofano, apresenta um aumento do dano às membranas e do efeito miotóxico. Os mecanismos de ação desses peptídeos e as suas estruturas foram estudados por dinâmica molecular, dicroísmo circular (DC), microscopia de fluorescência e monocamadas de Langmuir (Mlang). As adsorções dos peptídeos em monocamadas de ácido dimiristoil fosfatídico (DMPA) e dimiristoilfosfatidilcolina (DMPC) se processam por mecanismos diferentes ocasionados pelas diferentes naturezas físico-químicas dos resíduos tirosina e triptofano. A microscopia de fluorescência acoplada a Mlang de DMPA com 3W adsorvido mostra um aumento da fluidez da monocamada, enquanto que o 3Y modifica os domínios do DMPA para pequenas estruturas circulares. Foram realizadas simulações dos peptídeos 3Y e 3W em meio aquoso e nas regiões interfaciais água/n-hexano e água/bicamadas de DMPC. Os resultados confirmam os obtidos por Mlang, demonstrando que os peptídeos interagem diferentemente com as membranas por adotar conformações alternativas definidas previamente. Essas conformações, diferentes das observadas em meio aquoso, dependem da natureza da interface. As estruturas encontradas no final das simulaçoes corroboram o mecanismo proposto por Mlang, assim como as estruturas sugeridas por DC. Isso sugere que a atividade biológica reduzida do peptídeo 3Y ocorre porque os seus dois resíduos Leu se adsorvem na interface sem penetrá-la. Ao contrário de 3W, os resíduos carregados do peptídeo 3Y não estão localizados corretamente para promover uma interação suficientemente atrativa para permitir a sua inserção na membrana celular. / Hydrogen bonds (HB) are highly important in the determination of the structure of the water and proteins. They also play a important role in molecular recognition and in enzyme reaction mechanisms. The determination of protein/water intermolecular and protein intramolecular HB energies provide information with respect to the formation and stabilization of secondary, tertiary and quaternary protein structure. A method that quantifies and qualifies the properties of HB was developed using distance, geometric and energy criteria as applied to data obtained from the atomic trajectories generated by molecular dynamics simulations. The method was tested with a monomer of a catalytically inactive homodimeric phospholipase A2 from Bothrops asper(BaspMT-II) venom. HBs at dimmer interface are essential for maintaining the quaternary structure, and are highly conserved during hinge-like movements of the dimmer. HB formed by tryptophan residue at position 77 controls this movement. These motions can be associated to the membrane damaging action since they facilitate the insertion of the C-terminus into the cellular membrane. Previous studies have shown that synthetic peptide (3Y, coding the amino acids 115-129 of BaspMT-II ) presents bactericidal and cytolitic activities. A peptide variant ( 3W ), in which tyrosine residues were substituted by tryptophan residues, presents an enhanced membrane damaging activity increased miotoxic effect. The mechanism of action of the peptides and their structures were studied by molecular dynamics simulations, circular dichroism (CD), fluorescence microscopy and Langmuir monolayers (Mlang). The adsorption of the peptides on a monolayer composed of dimiristoyl phosphatidic acid (DMPA) and dimiristoylphosphatidyl choline (DMPC) occurs through different processes due to the differences in the physic-chemical nature of the tyrosine and tryptophan residues. Fluorescence microscopy together with Mlang of DMPA with adsorbed 3W indicates an increase of the membrane fluidity while small circular domains are formed with DMPA. Simulations were conducted with the 3Y and 3W peptides in aqueous media, is a water/n-hexane and water/DMPC bilayers. The results confirm the Mlang results, showing that the peptides interact differently with the membranes by adopting alternative previously defined conformations. These two conformations, both of which are different to those observed in water, are dependent of the nature of the interfaces. The final simulated configurations confirm the mechanism proposed by Mlang and the structures proposed by CD. It is suggest that the reduced biological activity of the 3Y peptide is due to the two Leu residues that only adsorb to the cellular membrane without penetrating the bilayer. In contrast to the 3W peptide, no charged residue is correctly located to promote the interaction and insertion of the 3Y peptide into the membrane.

As ligações de hidrogênio (LH), fundamentais na determinação da estrutura da água, proteínas, etc., são muito importantes no reconhecimento molecular e nos mecanismos de reações enzimáticas. A determinação da energia das LHs intramoleculares em proteínas e intermoleculares entre uma proteína e o solvente água, porque fornece informações sobre a estrutura secundária, terciária e quaternária das proteínas. Um método para quantificar e qualificar as LHs foi desenvolvido utilizando critérios de distância, geométricos e energéticos a partir das trajetórias obtidas por simulações de dinâmica molecular. O método foi testado com o monômero de uma fosfolipase A2 homodimérica, sem atividade catalítica, isolada do veneno da Bothrops asper(BaspMT-II). No dímero, a análise das LHs mostrou que elas são também essenciais na manutenção da estrutura quaternária. Essa análise permitiu identificar movimentos do tipo dobradiça acompanhados da formação transitória, na interface dimérica, de LHs controladas pelo triptofano na posição 77. Esses movimentos podem estar associados à ação danosa às membranas, uma vez que podem promover a inserção da região C-terminal na membrana. Estudos prévios mostraram que o peptídeo sintético (3Y codificado pelos aminoácidos 115-129 da BaspMT-II) apresenta atividade bactericida e citolítica. Um outro peptídeo (3W), mutante de 3Y, no qual três resíduos tirosina são substituidos por triptofano, apresenta um aumento do dano às membranas e do efeito miotóxico. Os mecanismos de ação desses peptídeos e as suas estruturas foram estudados por dinâmica molecular, dicroísmo circular (DC), microscopia de fluorescência e monocamadas de Langmuir (Mlang). As adsorções dos peptídeos em monocamadas de ácido dimiristoil fosfatídico (DMPA) e dimiristoilfosfatidilcolina (DMPC) se processam por mecanismos diferentes ocasionados pelas diferentes naturezas físico-químicas dos resíduos tirosina e triptofano. A microscopia de fluorescência acoplada a Mlang de DMPA com 3W adsorvido mostra um aumento da fluidez da monocamada, enquanto que o 3Y modifica os domínios do DMPA para pequenas estruturas circulares. Foram realizadas simulações dos peptídeos 3Y e 3W em meio aquoso e nas regiões interfaciais água/n-hexano e água/bicamadas de DMPC. Os resultados confirmam os obtidos por Mlang, demonstrando que os peptídeos interagem diferentemente com as membranas por adotar conformações alternativas definidas previamente. Essas conformações, diferentes das observadas em meio aquoso, dependem da natureza da interface. As estruturas encontradas no final das simulaçoes corroboram o mecanismo proposto por Mlang, assim como as estruturas sugeridas por DC. Isso sugere que a atividade biológica reduzida do peptídeo 3Y ocorre porque os seus dois resíduos Leu se adsorvem na interface sem penetrá-la. Ao contrário de 3W, os resíduos carregados do peptídeo 3Y não estão localizados corretamente para promover uma interação suficientemente atrativa para permitir a sua inserção na membrana celular. / Hydrogen bonds (HB) are highly important in the determination of the structure of the water and proteins. They also play a important role in molecular recognition and in enzyme reaction mechanisms. The determination of protein/water intermolecular and protein intramolecular HB energies provide information with respect to the formation and stabilization of secondary, tertiary and quaternary protein structure. A method that quantifies and qualifies the properties of HB was developed using distance, geometric and energy criteria as applied to data obtained from the atomic trajectories generated by molecular dynamics simulations. The method was tested with a monomer of a catalytically inactive homodimeric phospholipase A2 from Bothrops asper(BaspMT-II) venom. HBs at dimmer interface are essential for maintaining the quaternary structure, and are highly conserved during hinge-like movements of the dimmer. HB formed by tryptophan residue at position 77 controls this movement. These motions can be associated to the membrane damaging action since they facilitate the insertion of the C-terminus into the cellular membrane. Previous studies have shown that synthetic peptide (3Y, coding the amino acids 115-129 of BaspMT-II ) presents bactericidal and cytolitic activities. A peptide variant ( 3W ), in which tyrosine residues were substituted by tryptophan residues, presents an enhanced membrane damaging activity increased miotoxic effect. The mechanism of action of the peptides and their structures were studied by molecular dynamics simulations, circular dichroism (CD), fluorescence microscopy and Langmuir monolayers (Mlang). The adsorption of the peptides on a monolayer composed of dimiristoyl phosphatidic acid (DMPA) and dimiristoylphosphatidyl choline (DMPC) occurs through different processes due to the differences in the physic-chemical nature of the tyrosine and tryptophan residues. Fluorescence microscopy together with Mlang of DMPA with adsorbed 3W indicates an increase of the membrane fluidity while small circular domains are formed with DMPA. Simulations were conducted with the 3Y and 3W peptides in aqueous media, is a water/n-hexane and water/DMPC bilayers. The results confirm the Mlang results, showing that the peptides interact differently with the membranes by adopting alternative previously defined conformations. These two conformations, both of which are different to those observed in water, are dependent of the nature of the interfaces. The final simulated configurations confirm the mechanism proposed by Mlang and the structures proposed by CD. It is suggest that the reduced biological activity of the 3Y peptide is due to the two Leu residues that only adsorb to the cellular membrane without penetrating the bilayer. In contrast to the 3W peptide, no charged residue is correctly located to promote the interaction and insertion of the 3Y peptide into the membrane.

Hur elektrolytlösningar interagerar med laddade ytor är viktigt för många fenomen. I detta arbete undersöktes samspelet mellan flera joner med en negativt laddad yta som exponerade sulfonat funktionella grupper mot lösning. Särskild vikt lades på deprotoneringsbeteendet vid ytan. Samspelet mellan olika joner och sulfonatgruppen hade inte tidigare beaktats ur ett molekylärt perspektiv. Här användes ett Langmuir-monolager bestående av dokosan-1-sulfonsyra deponerat på olika elektrolytlösningar som modellsystem. För att studera molekylära interaktioner mellan ytan och elektrolyterna användes Vibrational Sum Frequency Spectroscopy (VSFS). Denna inneboende ytkänsliga teknik gör det möjligt att observera små förändringar i vibrationsenergier i sulfonagruppen vid kontakt med olika joner, här hydronium, litium, natrium och cesium. Ett av huvudsyftena med detta arbete var att jämföra de experimentellt bestämda parametrarna med teoretiska modeller av det elektriska dubbelskiktet vid laddade gränssnitt, såsom Gouy-Chapman-teorin och andra mer avancerade Poisson-Boltzmann-baserade modeller, för att utforska deras lämplighet och gränser av giltighet. Docosan-1-sulfonsyra packades snyggt i monolager, med packningstätheten ökande med starkare jonstyrka I underfasen. Två toppar i vibrationsspektra sågs för sulfonatgruppen, den symmetriska och asymmetriska sträckningen vid 1048 cm-1 respektive 1150 cm-1. Dessa band sågs blåskiftas vid bindning av litium- och natriummotjoner. Amplituden för den symmetriska sträckningen kunde kopplas direkt till mängden laddade arter. Den teoretiska Gouy-Chapman-modellen var tillräcklig att användas för relativt låga ytpotentialer (<|150mV|). För högre potentialer var motjonens storlek nödvändig att inkludera i modellen för mer exakta förutsägelser. Sulfonsyrans surhetsgrad uppmättes till att vara pKa=-1.8±0.4 och bindningskonstanterna för olika hårda joner till den sulfonatfunktionella gruppen uppskattades vara pKLi=0 och pKNa=-0.7. Däremot binder den mjuka jonen, cesium, inte till sulfonatgruppen. Implikationen är att sulfonatgruppen bör betraktas som en hård jon I enlighet med Collins lag om matchande vattenaffiniteter. / How electrolyte solutions interact with charged surfaces is essential for many phenomena in physics, chemistry and biology. In this work, the interactions of several ions with a negatively charged surface exposing sulfonate functional groups to solution were investigated. Specific emphasis was made on the deprotonation behaviour at the surface. The interplay between different ions and the sulfonate moiety had not been previously considered from a molecular perspective.  Here, a Langmuir monolayer consisting of docosane-1-sulfonic acid deposited on top of different electrolyte solutions was used as model system. To study the molecular interactions between the surface and the electrolytes, Vibrational Sum Frequency Spectroscopy (VSFS) was used. This intrinsically surface sensitive technique allows observing small changes in vibrational energies of the sulfonate functional group when in contact with different ionic species, here hydronium, lithium, sodium and cesium. One of the main objectives of this work was to compare the experimentally determined parameters with theoretical models of the electric double layer at charged interfaces, such as the Gouy-Chapman theory and other more advanced Poisson-Boltzmann based models, to explore their suitability and limits of validity. Docosane-1-sulfonic acid packed nicely into monolayers, with the packing density increasing with stronger ionic strength in the subphase. Two peaks in the vibrational spectra were seen for the sulfonate functional group, the symmetric and asymmetric stretch at 1048 cm-1 and 1150 cm-1, respectively. These bands were seen to blue-shift upon binding of lithium and sodium counterions. The amplitude of the symmetric stretch could be directly linked to the amount of charged species. The Gouy-Chapman theoretical model was adequate to use for relative low surface potentials (<|150mV|). For higher potentials, the size of the counterion was necessary to include in the model for more accurate predictions. The acidity of the sulfonic acid was measured to be pKa=-1.8±0.4 and the binding constants for different hard ions to the sulfonate functional group were estimated to be pKLi=0 and pKNa=-0.7. In contrast, the soft ion, cesium, does not bind to the sulfonate. The implication is that the sulfonate moiety should be considered a hard ion in accordance with Collins law of matching water affinities.

In day to day life we encounter many different materials which are intermediate between crystalline solids and simple liquids that include paints , glues , suspensions, polymers, surfactants, food and cosmetic products and so on. ‘Soft condensed matter’ is an emerging field of science that aims to generalize the flow and various deformation mechanisms in this apparent diverse class of materials from a ‘mesoscopic’ point of view (important length scales for these systems is usually 10nm-1μm) where the actual atomic and molecular details governed by various quantum mechanical laws are not very important. These soft systems are held together by weaken tropic forces and therefore can be perturbed easily (the typical elastic modulus of these materials is many orders of magnitude lower compared to metallic solids). Moreover, very long relaxation times in these systems(∼10−3 to 1 s) have made them ideal candidates to study non-equilibrium physics. The present Thesis is an endeavor to understand linear and non-linear flow behavior and low Reynolds number instabilities in various soft matter systems like suspensions of flocculated carbon nanotubes and carbon black, surfactant gels, colloidal glasses, Langmuir monolayers etc probed mainly by bulk and interfacial rheology, in-situ light scattering, particle image velocimetry(PIV) techniques and Fourier transform rheology. We also use dynamic light scattering techniques for particle sizing and characterization of Brownian systems. Chapter 1 gives a general introduction to soft condensed matter, particularly, the important length and time scales, various interactions and the rich phase behavior emerged from the delicate balance between energy and entropy in these systems. In this context, We describe the detailed phase behavior of two such systems studied in this thesis. We next describe briefly a few important concepts which motivate the main problems studied in the present thesis like the shear-thickening in suspensions of Brownian and non-Brownian particles, non-equilibrium steady state fluctuation relations in driven systems, elasticity driven instabilities in complex fluids, jamming transitions and aging behavior. This is followed by a discussion of the experimental techniques like linear and nonlinear rheology, including the Fourier transform rheology. Chapter 2 discusses the experimental techniques used by us in detail. We first describe the different components and mode of operations of the MCR-300 stress-controlled rheometer (Paar Physica, Germany) and various experimental geometries. Next we discuss the set up for two dimensional rheological measurements. The homebuilt imaging set up for in-situ polarized light scattering and direct imaging studies is described along with the in-situ particle image velocimetry (PIV) to map out the exact spatially resolved velocity profiles in 2D systems. We give a brief account of the techniques of Fourier transform rheology. At the end of this chapter, we briefly describe the angle resolved dynamic light scattering (DLS) set up (Brookhaven Instruments, USA). In Chapter 3, we study colossal discontinuous shear-thickening transition in confined suspensions of fractal clusters formed by multi-wall carbon nanotubes (MWNT) by rheology and in-situ imaging experiments. Monotonic decrease in viscosity with increasing shear stress, known as shear thinning, is a known rheological response to shear flow in complex fluids in general and for flocculated suspensions in particular. In the present experiments we demonstrate a discontinuous shear thickening transition where the viscosity jumps sharply above a critical shear stress by four to six orders of magnitude in flocculated suspensions of MWNT even at very low weight fractions(∼0.5%). Rheo-optical observations reveal the shear-thickened state as a percolated structure of MWNT flocs spanning the system size. We present a dynamic phase diagram of the non-Brownian MWNT dispersions revealing a starting jammed state followed by shear-thinning and shear-thickened states. The present study further suggests that the shear-thickened state obtained as a function of shear stress is likely to be a generic feature of fractal clusters under flow, albeit under confinement. An understanding of the shear thickening phenomena in confined geometries is pertinent for flow controlled fabrication techniques in enhancing the mechanical strength and transport properties of thin films and wires of nanostructured composites as well as in lubrication issues. We try to understand the flow of jammed and shear-thickened states under constant applied strain rate by studying the building up and relaxation of individual stress fluctuation events similar to the flow in dense granular materials. We also characterize the metastable shear thickened states by superposing a small sinusoidal stress component on a steady applied stress as well as by studying the a thermal entropy consuming fluctuations which are also observed for other jammed systems under an applied steady shear stress as described in the next chapter. Chapter 4 reports the study of non-equilibrium fluctuations in concentrated gels and glassy systems(in jammed state), the nature of fluctuations and their systemsize dependence in the framework of fluctuation relation and Generalized Gumbel distribution. In the first part, we show that the shear rate at a fixed shear stress in a micellar gel in a jammed state exhibits large fluctuations, showing positive and negative values, with the mean shear rate being positive. The resulting probability distribution functions (PDFs) of the global power flux to the system vary from Gaussian to non-Gaussian, depending on the driving stress and in all cases show similar symmetry properties as predicted by Gallavotti-Cohen steady state fluctuation relation. The fluctuation relation allows us to determine an effective temperature related to the structural constraints of the jammed state. We have measured the stress dependence of the effective temperature. Further, experiments reveal that the effective temperature and the standard deviation of the shear rate fluctuations increase with the decrease of the systemsize. In the second part of this chapter, we report a universal large deviation behavior of spatially averaged global injected power just before the rejuvenation of the jammed state formed by an aging suspension of laponite clay under an applied stress. The probability distribution function (PDF) of these entropy consuming strongly non-Gaussian fluctuations follow an universal large deviation functional form described by the Generalized Gumbel (GG) distribution like many other equilibrium and non-equilibrium systems with high degree of correlations but do not obey Gallavotti-Cohen Steady State Fluctuation Relation (SSFR). However, far from the unjamming transition (for smaller applied stresses) SSFR is satisfied for both Gaussian as well as non-Gaussian PDF. The observed slow variation of the mean shear rate with system size supports a recent theoretical prediction for observing GG distribution. We also establish the universality of the observations reported in this chapter in the light of other jammed systems under shear. We examine in the first part of Chapter 5, the shear-thinning behavior of a two dimensional yield stress bearing monolayer of sorbitan tristearate at air/water interface. The flow curve (stress vs shear rate) consists of a linear region at low shear stresses/shear rates, followed by a stress plateau at higher values. The velocity profile obtained from particle imaging velocimetry indicates that shear banding occurs showing coexistence of fluidized region near the rotor and solid region with vanishing shear-rate away from the rotor. In the fluidized region, the velocity profile which is linear at low shear rates becomes exponential at the onset of shear-thinning, followed by a time varying velocity profile in the plateau region. At low values of constant applied shear rates, the viscosity of the film increases with time, thus showing aging behavior like in soft glassy three-dimensional (3D) systems. Further, at the low values of the applied stress in the yield stress regime, the shear-rate fluctuations in time show both positive and negative values, similar to that observed in sheared 3D jammed systems. By carrying out a statistical analysis of these shear-rate fluctuations, we estimate the effective temperature of the soft glassy monolayer using the Galavatti-Cohen steady state fluctuation relation. In the second part of this chapter, we study in detail the non-linear viscoelastic behavior of Langmuir monolayers. Under oscillatory shear usually observed in many 3D metastable complex fluids with large structural relaxation times. At large strain amplitudes(γ), the storage modulus (G”) decreases monotonically whereas the loss modulus (G”) exhibits a peak above a critical strain amplitude before it decreases at higher strain amplitudes. The power law decay exponents of G” and G” are in the ratio 2:1. The peak in G” is absent at high temperatures and low concentration of sorbitan tristearate. Strain-rate frequency sweep measurements on the monolayers do indicate a strain-rate dependence of the structural relaxation time. The present study on sorbitan tristearate monolayers clearly indicates that the nonlinear viscoelastic behavior in 2D Langmuir monolayers is very general and exhibits many of the features observed in 3D complex fluids. We report in the first part of Chapter 6 scattering dichroism experiments to quantify the spatio-temporal nematodynamics of shear-thinning worm like micellar gels of surfactant Cetyltrimethylammonium Tosylate (CTAT) in the presence of salt sodium chloride (NaCl) enroute to rheochaos. For shear rates past the plateau onset, we observe a presence of alternating bright and dark‘ intertwined’ birefringent structures along the vorticity direction. The orientational order corresponding to these structures are predominantly oriented at +45deg and−45deg to the flow (v) in the (v,∇v) plane. The orientational dynamics of the nematics especially at the interface between the structures, has a one-to-one correspondence with the temporal behavior of the stress. Experiments show that the spatial motion of the vorticity structures depend on the gap thickness of the Couette cell. We next discuss the random temporal flow behavior of this system at high values of applied shear rate/stress in the framework of elastic turbulence in the second part of this chapter. Here, we study the statistical properties of spatially averaged global injected power fluctuations for the worm-like micellar system described above. At sufficiently high Weissenberg numbers (Wi) the shear rate and hence the injected power p(t) at a constant applied stress shows large irregular fluctuations in time. The nature of the probability distribution function (PDF) of p(t) and the power-law decay of its power spectrum are very similar to that observed in recent studies of elastic turbulence for polymer solutions. Remarkably, these non-Gaussian pdf scan be well described by an universal large deviation functional form given by the Generalized Gumbel (GG) distribution observed in the context of spatially averaged global measures in diverse classes of highly correlated systems. We show by in-situ rheology and polarized light scattering experiments that in the elastic turbulent regime the flow is spatially smooth but random in time, in agreement with a recent hypothesis for elastic turbulence. In Chapter 7, we study the vorticity banding under large amplitude oscillatory shear (LAOS) in a dilute worm-like micellar gel formed by surfactant CTAT by Fourier transform rheology and in-situ polarized light scattering. Under LAOS we found the signature of a non-trivial order-disorder transition of Taylor vortices. In the non-linear regime, higher harmonicde composition of the resulting stress signal reveals that the third harmonic I3 shows a very prominent maximum at the strain value where the number density (nv) of the Taylor vortices is maximum for a wide range of angular frequencies both above and below the linear crossover point. Subsequent increase in applied strain results in distortions of the vortices and a concomitant decrease in nv when I3 also drops very sharply and acts like an order parameter for this order-disorder transition. We further quantify the transition by defining an independent order parameter like quantity from the spatial correlation function of the scattered intensity and equivalently its Fourier transform which essentially captures the non monotonous third harmonic behavior. Lissajous plots indicate an intra-cycle strain hardening for the values of γ corresponding to the peak of I3 similar to that observed for hard-sphere glasses. Our study is an important step forward to correlating the structures developed in the system under LAOS to the appearances of the higher harmonics in the non-linear regime. The Thesis concludes with a summary of the main results and a brief account on the scope of future work as described in Chapter 8.

Deux membres des Visinin-Like Proteins (VILIPs), VILIP-1 et VILIP-3, ont été étudiés à l'aide de deux modèles membranaires biomimétiques, les monocouches de Langmuir couplées à la microscopie à l'angle de Brewster (BAM) et les bicouches lipidiques supportées (SLB) visualisées par microscopie à force atomique (AFM). A l'aide de ces deux modèles, nous avons pu montrer que les VILIPs, protéines N-myristoylées et possédant quatre mains-EF, ont une cinétique d'interaction membranaire qui augmente en présence de calcium, probablement dû à la présence d'un mécanisme type « switch calcium-myristoyle ». En revanche, l'utilisation de protéines mutées, non myristoylées, a révélé que la présence du groupement myristoyle n'est pas le seul facteur nécessaire pour que ces protéines interagissent avec la membrane. La présence d'une région N-terminale riche en résidus lysine permettrait à cette famille de protéines d'interagir via des interactions électrostatiques avec des membranes possédant des lipides anioniques et plus particulièrement du phosphatidylinositol-4,5-biphosphate (PIP2). La présence d'un faible pourcentage de ce phosphoinositide dans la membrane est responsable de l'accélération de la vitesse d'interaction membranaire des VILIPs, ce qui est cohérent avec leur location subcellulaire in cellulo. Enfin, un nouveau modèle membranaire de bicouches lipidiques suspendues sur des pilotis peptidiques (pep-tBLM) greffés sur une surface d'or a été ensuite développé. La méthode présentée dans ce manuscrit permet de créer des tBLM, de la composition lipidique souhaitée, en utilisant un peptide pilotis spécifiquement conçu durant cette thèse. La création de ce modèle a été suivie en temps réel par imagerie de résonance plasmonique de surface (SPRi) et caractérisé par AFM et par microscopie de fluorescence / Two members of the Visinin-Like Proteins (VILIPs) family, VILIP-1 and VILIP-3, have been studied using two biomimetic membrane models, the Langmuir monolayers coupled to the Brewster angle microscopy (BAM) and the supported lipid bilayers (SLB) visualized by atomic force microscopy (AFM). Using these two models, we have shown that VILIPs, N-myristoylated proteins with four EF-hands, have a membrane interaction kinetic that increases in the presence of calcium, probably due to the presence of a "calcium-myristoyl switch" mechanism. Tn contrast, the use of unmyristoylated proteins revealed that the presence of the myristoyl group is not the only factor necessary for the interaction of these proteins with the membrane. The presence of a N- terminal lysine-rich region allows this family of proteins to interact through electrostatic interactions with membranes containing anionic lipids and particularly the phosphatidylionisitol-4,5-biphosphate (PIP2). The presence of a small percent of phosphoinositide in the membrane is responsible for the acceleration of the binding rate of VILIPs, which is consistent with their subcellular location in cellulo. Finally, a new membrane model of peptide tethered lipid bilayers (pep-tBLM) grafted onto a gold surface was developed. The method described in this manuscript allows the formation of tBLM, containing the desired lipid composition, by using a home-designed peptide as tether. The formation is followed in real time by surface plasmon resonance imaging (SPRi) and has been characterized by AFM and fluorescence microscopy