Decomposition of soil organic matter by microbial processes results in carbon sequestration within soils and/or carbon loss via atmospheric emission of carbon dioxide and methane. Natural as well as anthropogenic factors have been documented to impact soil microbial diversity and the associated biogeochemical functions. The soil microbial communities co-inhabiting Miami-Dade County soils, Florida are under threat because of the ongoing restoration efforts in the adjoining Florida Everglades Parks, predicted climatic changes such as sea-level rise and high rainfall, as well as urbanization. Therefore, an improved understanding of the current microbial functional communities is essential to better assess the impact of soil communities when anthropogenic or climatic disturbances occur. The objectives of the current study were to characterize the biodiversity and distribution of: a) cellulose degrading microbial community, and b) methanogenic guilds responsible for producing the gas methane, across four different Miami-Dade County, Florida soil types using the high throughput technique of GeoChip 5.0 functional microarray. In addition, the influence of vegetation cover, organic content, soil moisture content, pH, and soil texture in shaping the soil functional microbial community was also investigated. The function of cellulose degradation was distributed across wide range of taxonomic lineages with the majority belonging to the bacterial groups of Actinobacteria, Firmicutes, Alphaproteobacteria, and Gammaproteobacteria, whereas Ascomycota and Basidiomycota were the only detected fungal phyla. The cellulolytic bacterial community correlated more with the vegetation cover while fungal groups showed influence of moisture and organic content as well as percent silt. Six out of the seven methanogenic orders, with the greatest numbers found in the Methanomicrobiales, Methanosarcinales, and Methanomassiliicoccales, were identified across all four soil types of Miami-Dade. The abundance of the mcrA gene sequences was significantly greater with respect to soil moisture content. Additionally, the recently classified order Methanomassiliicoccales was identified across all four soils, including soils with lower moisture content not thought to provide ideal redox conditions to support methanogens. The greater number of correlation network interactions amongst the methanogenic guilds in the Florida Everglades wetlands versus the urbanized Miami-Dade County soils depicted the impact of the historical drainage of the Florida Everglades on the methanogenic community. Overall, the current study characterized the biodiversity of cellulolytic and methanogenic organisms across dry and saturated soils of Miami-Dade County and demonstrated that microbial guilds were functionally redundant and were influenced to some extent by the soil abiotic factors. Also, results from network analyses provide a platform to assess the future impacts of disturbances on the microbial community.

Os impactos da poluição por hidrocarboneto de petróleo sobre a diversidade e funcionalidade das comunidades microbianas em manguezais não são totalmente conhecidos, principalmente devido às limitações metodológicas para acessar os microrganismos nãocultiváveis. No entanto, vários métodos moleculares independentes de cultivo têm sido utilizados para investigar a diversidade e a estrutura das comunidades microbianas em ecossistemas naturais. O objetivo deste trabalho foi avaliar as variações da estrutura das comunidades de Bacteria e Archaea e a diversidade de Bacteria em uma transeção de solo de mangue do rio Iriri (Bertioga, SP) com um gradiente de contaminação por hidrocarbonetos de petróleo. As análises por eletroforese em gel com gradiente desnaturante (DGGE) mostraram que as comunidades de Bacteria e Archaea nas diferentes posições geográficas foram mais similares entre si do que entre diferentes profundidades ao longo do perfil em uma mesma posição geográfica. A análise das seqüências de clones de rDNA 16S de Bacteria dos diferentes pontos amostrados em abril de 2000, mostrou que a diversidade genética, avaliada pelo índice de Shannon, das comunidades microbianas diferem estatisticamente somente entre ponto o P1 (ponto menos contaminado) e P3 (ponto mais contaminado). As estimativas não-paramétricas da riqueza de espécies mostraram que P1, P2 e P3 possuem mais de 3539, 2524 e 1421 espécies bacterianas, respectivamente. Já, para as amostras do ponto P2 coletadas nos anos 2000 e 2004, muito embora os valores dos índices de Shannon tenham sido semelhantes, houve uma provável dominância de grupos específicos nas amostras coletadas em 2004, verificada pelos altos valores da recíproca do índice de Simpson. Os dados mostraram também que o número estimado de espécies bacterianas no ponto P2 diminuiu com o tempo, sendo menor em amostras de 2004, se comparado com amostras de 2000. No geral, a afiliação filogenética dos clones de rDNA 16S mostrou a grande diversidade de espécies, a maioria não conhecidas. Os dados sugerem que a contaminação do solo de mangue do rio Iriri está selecionando microrganismos mais adaptados às fontes de carbono introduzidas no solo. / The impacts of petroleum hydrocarbon pollution on the diversity and functionality of the microbial communities in mangrove soils are not totally understood, mainly due to the methodological limitations to access unculturable microorganisms. However, several cultureindependent molecular methods have been used to investigate the diversity and structure of microbial communities in natural ecosystems. The aim of this work was to evaluate shifts in Bacteria and Archaea community structures and the diversity of Bacteria in a soil transection of the Iriri river mangrove (Bertioga, SP) showing a petroleum hydrocarbon contamination gradient. The analyses by denaturing gradient gel electrophoresis (DGGE) showed that the communities of Bacteria and Archaea in different geographical positions were more similar among them than the communities in different depths along the soil profile at the same geographical position. Sequence analyses of bacterial 16S rDNA clones from different points sampled in April 2000 showed that the genetic diversity of the bacterial communities, based on the Shannon index, differ statistically only between P1 (less polluted) and P3 (more polluted) locations. Nonparametric estimates of species richness showed that P1, P2 and P3 may have more than 3539, 2524 and 1421 bacterial species, respectively. For P2 sampled in years 2000 and 2004, even though the Shannon indices were similar, there was a probable dominance of specific bacterial groups in year 2004, based on the high values of the reciprocal of Simpson\'s index. The data also showed that the estimated number of bacterial species in P2 decreased with the time, being lower in samples collected in 2004, as compared to samples collected in 2000. In the general, the phylogenetic affiliation of the 16S rDNA clones showed high bacterial species diversity, and most of the bacteria were of unknown species. The data suggest that the contamination of Iriri river mangrove soil with petroleum hydrocarbon is selecting microorganisms more adapted to the introduced carbon sources into the soil.

Beim Bergbau werden bestehende Ökosysteme in großem Maße beeinflusst. Im ehemaligen Uranbergwerk Königstein (Sachsen) wurde die Umwelt durch den Einsatz von chemischen Säuren zur Lösung des Urans aus dem Erz (Laugung) in Folge der Verschiebung des pH-Wertes zusätzlich belastet. Durch diesen Prozess entstand eine Umgebung, die einen niedrigen pH-Wert und hohe Konzentrationen an gelösten Schwermetall-Ionen aufweist. Die komplexe mikrobielle Lebensgemeinschaft verschob sich daraufhin, indem sich bevorzugt säuretolerante und Schwermetall-tolerante Mikroorganismen durchsetzten. Diese Mikroorganismen wurden durch die Flutung der unter Tage Schächte im Jahr 2010 in ihrer Zusammensetzung erneut beeinflusst. In dieser Arbeit wurde die mikrobielle Biozönose nach Flutung der unter Tage Schächte des ehemaligen Uranbergwerkes Königstein charakterisiert und mit den Ergebnissen der mikrobiellen Diversität vor dem Flutungsprozess verglichen. Hierfür kam ein breites Spektrum an Methoden zum Einsatz, das klassische mikrobiologische Methoden und molekularbiologische Techniken umfasste. Die Analysen erfolgten dabei über mehrere Jahre hinweg, um die Variabilität der mikrobiellen Population im Grubenwasser planktonisch und im Biofilm zu erfassen.

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As soluções convencionais de tratamento biológico de corantes azo são baseadas em processos anaeróbio-aeróbios ocorrendo em unidades distintas. Este estudo avaliou o uso da aeração intermitente para a descoloração do Direct Black 22 (DB22) e biodegradação simultânea de subprodutos tóxicos no mesmo compartimento reacional. Os microrganismos utilizados foram obtidos de florestas tropicais e previamente adaptados a concentrações crescentes de DB22 (10-32,5 mg.L-1) em meio de cultivo. Os efeitos da concentração inicial de glicose (1 – 2 – 3 g.L-1) e aeração intermitente (0 – 4 – 8 h.d-1) sobre a descoloração, constante de descoloração e remoção de demanda química de oxigênio (DQO) foram investigados por planejamento fatorial e análise de superfície de resposta. Os testes foram conduzidos com água residuária (AR) que simulava a composição dos efluentes de lavanderias têxteis do agreste pernambucano. Os resultados demonstraram que a descoloração no longo prazo não foi inibida para ciclos de aeração de até 4 h.d-1, embora menores velocidades de remoção de cor tenham sido obtidas nestas condições. Os efeitos negativos da aeração foram significativamente reduzidos pelo aumento da concentração de glicose na AR. Ademais, a remoção de DQO foi potencializada com o aumento da frequência de aeração. Após descoloração do DB22 nos ensaios não aerados, verificou-se a formação de picos de absorbância relacionados à presença de aminas aromáticas ou outros intermediários da descoloração redutiva; o que não ocorreu nos experimentos aerados. Estes fatores resultaram em menor toxicidade à Daphnia magna em experimento modelo com nível intermediário de aeração. O sequenciamento do gene 16S rRNA na plataforma Illumina HiSeq revelou a presença de gêneros de bactérias conhecidos por produzirem enzimas envolvidas na biodegradação do azo. Observou-se, ainda, uma correlação positiva entre diversidade microbiana e eficiência de descoloração. Os resultados sugerem que a estratégia de aeração intermitente, corretamente implementada, pode melhorar a performance do tratamento biológico de efluentes têxteis que contém azo-corantes. / Conventional technologies for biological treatment of azo dyes are based on anaerobic-aerobic processes taking place into distinct units. This study evaluated the use of intermittent aeration strategy for decolorization of the Direct Black 22 (DB22) and simultaneous biodegradation of metabolites. Microorganisms were obtained from tropical forests and previously acclimated to increasing concentrations of DB22 (10-32.5 mg.L-1) in growth medium. Effects of initial glucose concentration (1 – 2 – 3 g.L-1) and intermittent aeration (0 – 4 – 8 cycles.d-1) on response variables decolorization, decolorization rate, and removal of chemical oxygen demand (COD) were investigated using factorial design and response surface analysis. Tests were conducted using a wastewater that simulated the composition of textile laundry effluents from a region with harsh climate in the state of Pernambuco, known as agreste pernambucano. Results showed long-term decolorization was not impaired for up to 4 cycles.d-1 of aeration, although a decrease in color removal velocities was observed in these experiments. Negative impacts of aeration were significantly reduced by increasing initial glucose concentration. Moreover, COD removal was enhanced with increased aerations levels. After DB22 degradation in non-aerated batches, the formation of absorbance peaks associated with aromatic amines and other byproducts of reductive decolorization was observed; which did not occur in the aerated experiments. These resulted in lower toxicity to Daphnia magna in model experiment using intermediate level of aeration. 16S rRNA gene sequencing on the Illumina HiSeq platform revealed the presence of several bacteria known to produce enzymes involved in azo compounds degradation. Furthermore, a positive correlation between microbial diversity and decolorization efficiency was observed. Results suggest intermittent aeration strategy can enhance biological treatment of textile effluents containing azo dyes when correctly implemented.

Altos fluxos positivos de metano para a atmosfera foram detectados na região amazônica. O gás metano é o segundo mais importante gás de efeito estufa e micro-organismos pertencentes ao Domínio Archaea são responsáveis pela produção de aproximadamente 70% do metano emitido para a atmosfera anualmente. O objetivo deste trabalho foi caracterizar a diversidade de arqueias em sedimentos dos rios Floresta e Madeira através de técnicas moleculares e do cultivo de arqueias metanogênicas. A maior parte das sequências obtidas nas duas bibliotecas pertence ao domínio Crenarchaeota, algumas com similaridade menor que 97% às sequências depositadas nos bancos de dados, revelando a existência de grupos ainda não descritos na literatura. Nos enriquecimentos do sedimento do rio Madeira detectaram-se células pertencentes às famílias Methanosarcinaceae e Methanobacteriaceae pelo emprego de sondas fluorescentes de RNA. Culturas dos gêneros Methanosarcina e Methanobacterium foram estabelecidas em laboratório. A grande diversidade de arqueias não cultivadas encontrada vem reforçar a necessidade de se estudar esse grupo, especialmente sua fisiologia e, consequentemente, seu papel ecológico nos diversos ambientes em que são encontrados. / High positive fluxes of methane to the atmosphere have been detected in the Amazonian region. Methane is the second most important greenhouse gas and microorganisms belonging to the Archaea domain are responsible for approximately 70% of the total methane emitted to the atmosphere annually. The objective of this work was to characterize the Archaea diversity in two sites at Madeira and Floresta rivers sediments using molecular techniques and the culturing of methanogenic archaea. Most sequences obtained in the libraries from both rivers belonged to the Crenarchaeota domain, and around half of them presented less than 97% of similarity to sequences available in databases, revealing the existence of new archaea groups yet to be described in the literature. Cells belonging to the Methanosarcinaceae and Methanobacteriaceae families were detected in the enrichment cultures from Madeira River through the use of RNA fluorescent probes. Strains of Methanosarcina sp. and Methanobacterium sp. are being maintained under laboratory conditions. The great diversity of uncultured Archaea found emphasizes the need to study this group, mainly its physiology and, consequently, its role in the diverse environments they occupy.

A Política Nacional de Resíduos Sólidos, instituída pela Lei Federal 12.305 em agosto de 2010 e regulamentada pelo Decreto 7.404, em 23 de dezembro de 2010, estabeleceu um novo paradigma na gestão e gerenciamento dos resíduos sólidos no Brasil. Entre as mudanças apresentadas, uma das mais relevantes é a que prioriza o não aterramento da fração orgânica e a recuperação energética dos resíduos. Por esse motivo, a busca por novas tecnologias para o tratamento desses resíduos tem sido intensificada nos últimos anos. Nesse contexto, o objetivo deste trabalho busca avaliar o potencial de se realizar estratégias para aclimatação de lodos anaeróbios em possíveis inoculações de biometanizadores alimentados com fração orgânica dos resíduos sólidos urbanos (FORSU). Foram analisados dois diferentes lodos, esses em função da decomposição e estabilização da FORSU por meio de ensaios de biodegradabilidade anaeróbia. O primeiro, lodo ETE (LE), foi coletado de um reator UASB, utilizado para tratamento de esgoto sanitário doméstico, já o segundo, lodo Aterro (LA), foi coletado de uma lagoa de acúmulo de lixiviados em um aterro sanitário desativado. Para os ensaios, utilizaram-se frascos Duran® de 250 mL, incubados a 35°C, considerando-se a co-digestão nas seguintes relações resíduo/inóculo (R0/I0): 1/16, 1/8, 1/4, 1/2 e 1/1 gSTVresíduo.gSTVinóculo-1. As estratégias de aclimatação consistiram em manter o inóculo para as próximas bateladas, bem como, dobrar as relações (R0/I0) com sucessivas alimentações realizadas em três bateladas sequenciais. Para que fossem possíveis o controle e a verificação do processo ao longo das bateladas, foram realizadas análises físico-químicas, microbiológicas, cinéticas e de atividade metanogênica específica (AME). Os inóculos adaptaram-se de imediato à FORSU, tendo sido verificada produção crescente de metano já nos primeiros dias dos testes. Os melhores resultados do potencial bioquímico de metano foram obtidos pelas menores relações (R0/I0) para ambos os inóculos. As maiores relações (R0/I0) influenciaram negativamente o desempenho do processo de biometanização para o inóculo LE, verificada pelas menores taxas máximas de rendimento de metano e maiores fase lag. Para o inóculo LA, ao final do processo de aclimatação foi verificado maior índice de diversidade para o Domínio Archaea, corroborando com os resultados obtidos pela quantidade de micro-organismos metanogênicos. Essas verificações se deram por meio de análises de microscopia óptica e pelos maiores valores obtidos nos testes de AME. Destarte, conclui-se que a estratégia de aclimatação se utilizando das menores relações (R0/I0): 1/16, 1/8 e 1/4 para o inóculo LA, possui o maior potencial, sendo esse na inoculação em maiores relações (R0/I0) na partida de biometanizadores alimentados com fração orgânica dos resíduos sólidos urbanos, logo, garantindo-se efetividade no processo. / The National Policy on Solid Waste, instituted by Federal Law 12,305 in august 2010 and regulated by Decree 7404, on december 23, 2010, established a new paradigm in the management of solid waste in Brazil. Among the changes presented, one of the most relevant is the one that prioritizes the non-grounding of the organic fraction and the energy recovery of the waste. For this reason, the search for new technologies for the treatment of this waste has been intensified in recent years. In this context, the objective of this work is to evaluate the potential of strategies for acclimatization of anaerobic sludge in possible inoculations of biomethanizers fed with organic fraction of municipal solid waste (OFMSW). Two different sludges were analyzed, as a function of the decomposition and stabilization of OFMSW by anaerobic biodegradability tests. The first, ETE sludge (LE), was collected from a UASB reactor, used to treat domestic sanitary sewage, while the second, Aterro sludge (LA) was collected from a pond of leachate accumulation in a deactivated landfill. For the tests, 250 ml Duran® flasks incubated at 35°C were used, considering co-digestion in the following residue/inoculum ratios (R0/I0): 1/16, 1/8, 1/4, 1/2 and 1/1 gSTVresidue.gSTVinoculum-1. The acclimation strategies consisted in maintaining the inoculum for the next batch, as well as doubling the ratios (R0/I0) with successive feedings performed in three sequential batches. In order to control and verify the process throughout the batch, physical-chemical, microbiological, kinetic and specific methanogenic activity (SMA) analyzes were performed. The inocula immediately adapted to OFMSW, and there was a growing production of methane already in the first days of the tests. The best results of the biochemical potential of methane were obtained by the lower ratios (R0/I0) for both inoculum. The higher ratios (R0/I0) negatively influenced the performance of the biomethanization process for the LE inoculum, verified by the lower maximum methane yield rates and higher lag phase. For the inoculum LA, at the end of the acclimation process, a higher diversity index was verified for the Archaea Domain, corroborating with the results obtained by a number of methanogenic microorganisms. These tests were carried out by means of optical microscopy and the highest values obtained in the SMA tests. Therefore, it is concluded that the acclimation strategy using the lowest ratios (R0/I0): 1/16, 1/8 and 1/4 for the inoculum LA, has the highest potential, being inoculated at higher rates (R0/I0) at the start of biomethanizers fed with organic fraction of municipal solid waste, thus, ensuring effectiveness in the process.

O objetivo deste trabalho foi estudar a aplicação de reator anaeróbio serial (RAS) no processamento de vinhaça de cana-de-açúcar para a remoção de matéria orgânica e produção de biogás, submetido ao aumento gradativo de carregamento orgânico. Para tanto, foi utilizado um reator composto por quatro câmaras em série denominadas C1, C2, C3 e C4, com capacidade de 5 L cada, totalizando um volume de 20 L. A primeira etapa do trabalho (Etapa 1) consistiu na operação e monitoramento do reator RAS partindo-se da aplicação da carga orgânica volumétrica (COV) de 0,5 kg DQO m-3.d-1 até a obtenção da COV de 2,5 kg DQO m-3.d-1. Na segunda etapa (Etapa 2) foram operados reatores em batelada sequencial, simulando a operação contínua do reator RAS, visando estudar o efeito do aumento de taxas de carregamento orgânico aplicado. O reator RAS operou sob baixos valores de COVglobal e COALglobal aplicados na Etapa 1, obtendo-se máximas de 2,50 kg DQO m-3.d-1 e 0,167 kg STV m-3.d-1, respectivamente. Os resultados obtidos da Etapa 1 indicam satisfatória remoção global média de matéria orgânica na forma de DQO, superiores a 90 %, propiciada pela adaptação da biomassa ao longo dos reatores sequenciais. O metano apresentou-se como o gás predominante na composição do biogás produzido, com valores acima de 75 %, que confirmam o estabelecimento do sistema metanogênico pleno. Em todos os compartimentos dos reatores sequenciais verificou-se maior abundância relativa para os domínios Archaea e Bacteria os gêneros Methanosaeta, produtores de metano e, T78, responsável pela degradação de açúcares, respectivamente. Principalmente para os reatores C3 e C4, observou-se adaptação de algumas populações para ambos os domínios Bacteria e Archaea indicado pelo menor índice de diversidade e aumento da dominância. O aumento das taxas de carregamento orgânico aplicado ao lodo, estipuladas nos ensaios em batelada na Etapa 2, propiciou o aumento dos valores de carga orgânica aplicada para todos os reatores. Com o aumento do carregamento orgânico aplicado, observa-se o aumento e acúmulo de ácidos orgânicos para todas as fases dos ensaios, principalmente o acético. A produção de metano foi significativa na operação dos reatores em batelada, principalmente em C1. De forma geral, os resultados obtidos demonstraram o bom desempenho do processamento da vinhaça de cana-de açúcar em reator compartimentado tipo RAS para a remoção de matéria orgânica e produção de biogás. / The aim of this study was to investigate the application of an anaerobic serial reactor (ASR) in the sugarcane stillage processing for the removal of organic matter and biogas production, submitted to the gradual increase in organic loading rate. ASR reactor consisted of four reactors operated in series (C1, C2, C3 and C4), each with a reaction volume of 5 L (total volume of 20 L). The first step (Step 1) consisted of reactor operation and monitoring; organic loading rate was gradually increased from 0.5 kg COD m-3d-1 up to 2.5 kg COD m-3 d-1. In the second step (Step 2), sequential batch reactors were operated, simulating the continuous ASR reactor operation, aiming to study the effect of the increase of organic load applied to sludge (OLS). The ASR reactor operated under low values of COVglobal and COALglobal applied in Step 1, obtaining a maximum 2.50 kg COD m-3d-1 and 0.167 kg TVS/m-3d-1, respectively. The results obtained from Step 1 indicated satisfactory removal of the global average organic matter in the form of COD more than 90 %, caused by adaptation of the biomass along the sequential reactors. Methane appeared to be the predominant gas in biogas composition, with values above 75%, which confirmed the establishment of the full methanogenic system. In all compartments of the sequential reactors, there was a higher relative abundance for the domains Archaea and Bacteria of the genera Methanosaeta, methane producers, and T78, which is responsible for degradation of sugars, respectively. Especially for the reactors C3 and C4, the adaptation of some populations for both domains Bacteria and Archaea indicated was observed by the lower diversity index and increase in dominance. The increase of the organic loading rates applied to the sludge, as established in the batch tests, increased the organic load values applied to all reactors. With the increase of organic loading applied, an increase in the accumulation of organic acids, mainly acetic, for all stages and the batch tests. Methane production was significant in the operation of batch reactors, mainly in the C1. In general, the results obtained showed good performance of the processing of the sugarcane stillage in serial reactor (ASR) for the removal of organic matter and biogas production.

Recent declines in returns from primary forest products in New Zealand and projected increases in world food prices have led to the land-use conversion from plantation forest to pastoral farming in many lowland areas. After decades of forest cover the soils are in many cases less than adequate for pastoral farming, as they are acidic, with toxic levels of exchangeable aluminum, and contain low levels of available nitrogen (N), very high carbon (C):N ratio, and are devoid of earthworms and structural integrity. Overcoming the major site limitations of low soil pH and available N was a major priority and a field experiment was established in April 2005 to determine the impact of various rates of lime and N in relation to pasture establishment and production. Concerns about the short and long-term effects of these inputs on biological soil quality gave rise to the present study. The effects of land-use change and establishment inputs were assessed by comparison of selected treatment plots with two adjacent reference sites (long-term pasture and a 60–year Pinus radiata forest) on the same soil type. The effects of lime and N on soil biological quality were investigated under field and controlled environment conditions by determination of: microbial community structure (phospholipid fatty acids - PLFA), microbial biomass (total PLFA), and microbial activity (dehydrogenase activity). Soil physical (percentage water-stable aggregates) and chemical (pH, and total C and N) properties were also determined. Similarly, the effects of earthworm addition on soil biological properties were explored in a short-term glasshouse pot experiment. The role of earthworms as indicators of soil biological quality in the field was assumed by nematodes and these were assessed in field trial plots and the reference sites mentioned above. Land-use change and applications of lime and N contributed to changing the microbial community structure determined by principal component analysis of transformed PLFA data. However, the effect of lime was more pronounced in the field, while N contributed most to changing microbial community structure in the glasshouse. Mean microbial activity in the field increased from 4 µg dwt/hr without lime to 16 and 21 µg dwt/hr where lime was applied at 5 and 10 tons/hectare (t/ha), respectively. Mean microbial activity in the field was markedly higher (7-fold) than in the glasshouse at similar rates of lime. Lime application also increased soil moisture retention in the field, mean gravimetric soil moisture increased from 0.33 in control plots to 0.38 and 0.39 in plots treated with 5 and 10 t/ha lime, respectively. Lime application was associated with greater soil aggregate stability. Soils from test plots treated with 5 and 10 tons/ha lime had 45-50% water-stable aggregates compared to 34% in treatments without lime. After 16 weeks in pots, earthworm treatments increased mean plant dry matter (DM)/pot by at least 19% above the control. The increase was attributed primarily to greater N mineralization in the presence of earthworms. For the duration of the trial the earthworm species tested (Apporectodea caliginosa and Lumbricus rubellus, individually or combined) did not affect any of the measured soil microbial properties. However, the survival rate of A. caliginosa was 83% compared to 25% for L. rubellus. The control not receiving any lime or N and plots treated with 10t/ha lime and 200 kgN/ha had similar nematodes species composition, comprising 40% each of bacterial and fungal feeding nematodes. They differed markedly from the reference sites as the forest soil was dominated by plant associated species (38%) and the long-term pasture had 44% plant parasitic nematodes. Accordingly, the soil food web condition inferred from nematode faunal analysis characterized all test plots as basal, stressed and depleted, while the forest soil was categorized as highly structured and fungal dominated. The findings of this thesis demonstrated that land-use change from forest to pasture can have significant impacts on soil biological properties, earthworms can contribute to pasture productivity even in the short term, and nematode faunal analysis is a robust and reliable indicator of soil biological quality.

Recent declines in returns from primary forest products in New Zealand and projected increases in world food prices have led to the land-use conversion from plantation forest to pastoral farming in many lowland areas. After decades of forest cover the soils are in many cases less than adequate for pastoral farming, as they are acidic, with toxic levels of exchangeable aluminum, and contain low levels of available nitrogen (N), very high carbon (C):N ratio, and are devoid of earthworms and structural integrity. Overcoming the major site limitations of low soil pH and available N was a major priority and a field experiment was established in April 2005 to determine the impact of various rates of lime and N in relation to pasture establishment and production. Concerns about the short and long-term effects of these inputs on biological soil quality gave rise to the present study. The effects of land-use change and establishment inputs were assessed by comparison of selected treatment plots with two adjacent reference sites (long-term pasture and a 60–year Pinus radiata forest) on the same soil type. The effects of lime and N on soil biological quality were investigated under field and controlled environment conditions by determination of: microbial community structure (phospholipid fatty acids - PLFA), microbial biomass (total PLFA), and microbial activity (dehydrogenase activity). Soil physical (percentage water-stable aggregates) and chemical (pH, and total C and N) properties were also determined. Similarly, the effects of earthworm addition on soil biological properties were explored in a short-term glasshouse pot experiment. The role of earthworms as indicators of soil biological quality in the field was assumed by nematodes and these were assessed in field trial plots and the reference sites mentioned above. Land-use change and applications of lime and N contributed to changing the microbial community structure determined by principal component analysis of transformed PLFA data. However, the effect of lime was more pronounced in the field, while N contributed most to changing microbial community structure in the glasshouse. Mean microbial activity in the field increased from 4 µg dwt/hr without lime to 16 and 21 µg dwt/hr where lime was applied at 5 and 10 tons/hectare (t/ha), respectively. Mean microbial activity in the field was markedly higher (7-fold) than in the glasshouse at similar rates of lime. Lime application also increased soil moisture retention in the field, mean gravimetric soil moisture increased from 0.33 in control plots to 0.38 and 0.39 in plots treated with 5 and 10 t/ha lime, respectively. Lime application was associated with greater soil aggregate stability. Soils from test plots treated with 5 and 10 tons/ha lime had 45-50% water-stable aggregates compared to 34% in treatments without lime. After 16 weeks in pots, earthworm treatments increased mean plant dry matter (DM)/pot by at least 19% above the control. The increase was attributed primarily to greater N mineralization in the presence of earthworms. For the duration of the trial the earthworm species tested (Apporectodea caliginosa and Lumbricus rubellus, individually or combined) did not affect any of the measured soil microbial properties. However, the survival rate of A. caliginosa was 83% compared to 25% for L. rubellus. The control not receiving any lime or N and plots treated with 10t/ha lime and 200 kgN/ha had similar nematodes species composition, comprising 40% each of bacterial and fungal feeding nematodes. They differed markedly from the reference sites as the forest soil was dominated by plant associated species (38%) and the long-term pasture had 44% plant parasitic nematodes. Accordingly, the soil food web condition inferred from nematode faunal analysis characterized all test plots as basal, stressed and depleted, while the forest soil was categorized as highly structured and fungal dominated. The findings of this thesis demonstrated that land-use change from forest to pasture can have significant impacts on soil biological properties, earthworms can contribute to pasture productivity even in the short term, and nematode faunal analysis is a robust and reliable indicator of soil biological quality.