Graduation date: 2003

In eukaryotes, folate-dependent one-carbon (1-C) metabolism is composed of two parallel pathways compartmentalized to either the cytoplasm or mitochondria. In each, 1-C units, carried on tetrahydrofolate (THF), are interconverted by four catalytic activities. Serine hydroxymethyltransferase transfers the 3-carbon of serine to THF forming 5,10-methylene-THF which is oxidized in 3 successive steps to formate via the intermediates, 5,10-methenyl-THF and 10-formyl-THF. Because of the redox potential in each compartment, 1-C flux is thought by most authors to be from formate to serine in the cytosol and in the opposite direction in mitochondria. Transport of serine, glycine and formate across the mitochondrial membranes creates a 1-C cycle. All eukaryotes characterized to date contain a cytoplasmic trifunctional C1-THF synthase possessing 5,10-methylene-THF dehydrogenase, 5,10-methenyl-THF cyclohydrolase and 10-formyl-THF synthetase activities which interconvert the catalytic intermediates between 5,10-methylene-THF and formate. However, despite the observation that adult rat liver mitochondria oxidize serine to formate, no known enzymatic activities correlate with those of cytoplasmic C1-THF synthase. In embryos, a bifunctional protein, containing 5,10-methylene-THF dehydrogenase and 5,10-methenyl-THF cyclohydrolase, accounts for two of these activities. But the 10-formyl-THF synthetase activity has no associated enzyme in mitochondria. Reported here is the discovery of a monofunctional homolog of C1-THF synthase in mammalian mitochondria. Characterization of the protein confirms mitochondrial localization and 10-formyl-THF synthetase activity. Likewise, the adult human transcript is present and differs in size and tissue distribution from cytosolic C1-THF synthase. In mouse embryos, the temporal expression of the mRNA starts out relatively low and increases as the embryos age. The spatial distribution of the transcript is ubiquitous but with areas of elevated expression corresponding to proliferative regions within the embryo. The temporal expression pattern of the protein and transcript correspond well. However, mitochondrial flux studies and immunoblotting data suggest that mitochondrial C1-THF synthase is not the rate-limiting enzyme in mitochondria, at least during the mid to later stages of embryogenesis. Additionally, studies modulating the expression of mitochondria 1-C proteins demonstrate the likelihood that most cytoplasmic 1-C units are mitochondrially derived. / text

Thesis (Ph.D.)--University of Alabama at Birmingham, 2009. / Title from first page of PDF file (viewed on June 10, 2009). Includes bibliographical references.

Orientador: Sony Dimas Bicudo / Banca: Maria Inês Lenz Souza / Banca: Rubens Paes de Arruda / Banca: César Roberto Esper / Banca: Maria Denise Lopes / Resumo: Várias pesquisas foram desenvolvidas visando a melhoria da congelabilidade do sêmen ovino. Contudo, ainda não houve progressos significativos na fertilidade do sêmen congelado após a inseminação artificial cervical. Diversos sistemas de análise computadorizada do movimento espermático (CASA) têm sido propostos e aplicados na tentativa de quantificar características específicas do movimento espermático, podendo ainda determinar a presença e a cinética das subpopulações de espermatozóides. Muitos testes para avaliar a função espermática foram desenvolvidos, permitindo analisar simultaneamente diferentes aspectos da função espermática. Análise da função mitocondrial oferece uma maneira de acessar a motilidade espermática. Foram objetivos otimizar o sistema CASA na avaliação do sêmen congelado; determinar parâmetros da cinética espermática que expressem analogia com as características da avaliação das membranas plasmática, acrossomal e mitocondrial (IP, FITC-PSA e JC-1; MITO; R-123) e utilizar conjuntamente os parâmetros fornecidos pelo sistema CASA e pelas sondas fluorescentes para agrupar as amostras de maneira qualitativa. Vinte e seis amostras de sêmen congelado de diferentes carneiros foram estudadas pelo CASA obtendo-se para os parâmetros VCL, VAP, VSL, ALH, BCF, LIN, STR, ELONG dados médios e individuais para cada espermatozóide e por sondas fluorescentes para a avaliação simultânea da integridade de membrana plasmática, reação acrossomal e potencial de membrana mitocondrial. Estatisticamente aplicou-se a análise exploratória de técnicas multivariadas obtendo-se três fatoriais sendo o primeiro fator F1 positivo e alto para as variáveis VAP, VSL, STR e LIN, que é interpretado com um fator relacionado à progressividade. Para o segundo fator F2, associam as variáveis VCL, ALH e MT, que representam um fator de deslocamento...(Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Many researches were developed to improve the ram semen criopreservation. However, no significant advances in the fertility rates with the frozen semen were observed with cervical artificial insemination. Several computer-assisted motility assessments (CASA) systems have been considered and applied in the attempt to quantify specific characteristics of the sperm motion and still them being able to determine the spermatozoa presence and subpopulations kinematics. A large number of sperm functions evaluation had been developed, making it possible to analyze different aspects of the sperm function simultaneously. Analysis of the mitochondrial function offers a way to have access the sperm motility. The aim of this study was to optimize the CASA system in the evaluation of the ram frozen semen; determine parameters of the sperm kinematics that express analogy with the characteristics of the evaluation of plasmatic, acrossomal and mitochondrial membranes (PI, FITC-PSA and JC-1; MITO; R-123) and use CASA parameters together with the fluorescent probes to group samples in a qualitative way. Twenty and six frozen semen samples of different rams were evaluated by CASA system for mean and individual sperm motion parameters VCL, VAP, VSL, ALH, BCF, LIN, STR, ELONG and for fluorescent probes leads for the simultaneous evaluation of the integrity of plasmatic, acrossomal membranes and membrane mitochondrial potential. The statistic applied was multivariate analysis getting to three different factorials. The first factor was positive and high (F1 factor) for variables VAP, VSL, STR and LIN, that were interpreted with the forward displacement. For F2 factor, there were associate variables VCL, ALH and MT that represent the displacement. The F3 factor, whose interpretation has to do with available energy, was associated with variables BCF, MITO and ELONG...(Complete abstract, click electronic address below) / Doutor

Neurodegenerative diseases are highly multifaceted. Despite their heavy burden, treatment options are limited and our understanding of their molecular triggers even less so. In this thesis, I focus on the pathogenesis of Alzheimer’s Disease (AD) due to familial, sporadic and environmental causes. Previous research shows that early AD stages are characterized by upregulated functionality of mitochondria-associated endoplasmic reticulum (ER) membranes. These “MAM” domains of the ER are dynamic contacts between the ER and mitochondria distinguished by a unique lipid composition equivalent to a lipid raft. These sites cluster a specific set of metabolic enzymes that regulate cellular lipid uptake, trafficking and turnover. We find that cleavage of the amyloid precursor protein at MAM domains is intimately involved in MAM regulation through localization of its C-terminal fragment of 99 a.a., C99, to MAM regions. C99 upregulates MAM functionality by promoting cholesterol uptake and trafficking to the ER for esterification, observable in both familial and sporadic AD samples. Here, we recapitulated these phenotypes in a mouse model of an environmental AD trigger: traumatic brain injury (TBI). Through biochemical, transcriptional and lipidomic analyses, we observed MAM functionality to be upregulated following a single brain injury. This was determined by assessment of phospholipid synthesis and cholesterol esterification. This correlated with increased deposition of C99 in MAM domains as well as cell type-specific lipidomic alterations. Specifically, cholesterol esterification was predominant in microglia, triglyceride elevations were predominant in microglia and astrocytes, and polyunsaturated phospholipid elevations were predominant in neurons. We hypothesize that, in the acute phase, MAM upregulation serves to promote lipid synthesis for tissue repair. However, if these phenotypes are sustained (such as after multiple injuries), cognitive functions dependent on neuronal functionality could become compromised. Altogether, we propose that the induction of AD pathogenesis following brain injury may arise from chronic upregulation of MAM activities. This work advances our understanding of neurodegenerative disease etiology.

The mechanisms by which mitochondria convert nutrients into cellular energy have been described in intricate detail, and yet, the regulation and compartmentalization of such metabolic pathways are poorly understood. As a result, the underlying causes of mitochondrial dysfunction and bioenergetic deficiency in diseases such as amyotrophic lateral sclerosis (ALS) remain elusive. To address this longstanding gap in the field, we first sought to understand how the metabolism of glucose and glucose-derived pyruvate are regulated in the cell. Previous research has suggested that this metabolic regulation is mediated by specialized lipid raft domains of the endoplasmic reticulum (ER) in close contact with mitochondria, referred to as mitochondria-associated ER membranes (MAM). Using density gradient ultracentrifugation and immunoblotting techniques, we found that MAM domains play a role in the compartmentalization of glycolysis by recruiting and promoting the interaction of specific glycolytic enzymes. We then performed a series of bioenergetic, proteomic, and lipidomic analyses to determine how the establishment of ER-mitochondria contact sites at MAM affects the biology of mitochondria attached at these domains. We observed a novel distinction between mitochondria in contact with ER-MAM domains (MER) and those that are free from the ER (FM), with MER displaying a higher capacity for pyruvate-driven respiration and FM being specialized for fatty acid-driven energy production. Finally, using cell and mouse models of ALS with mutations in superoxide dismutase 1 (SOD1), we found that the glycolytic deficiency in ALS is a direct consequence of the progressive disruption of MAM structure and function, which thereby hinders the use of glucose-derived pyruvate as a mitochondrial fuel. This triggers a shift in mitochondrial substrate from pyruvate to fatty acids that, when sustained over time, contributes to the death of motor neurons and the progression of this fatal disease. Overall, this work aims to advance our understanding of metabolic compartmentalization, mitochondrial substrate specificity, and the relevance of both to ALS etiology.

Thesis (M.Sc.)--University of Alberta, 2009. / A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Master of Science, Department of Cell Biology. Title from pdf file main screen (viewed on October 24, 2009). Includes bibliographical references.

Le VDAC (Voltage-Dependent Anion-selective Channel) est un canal ionique de la membrane externe de la mitochondrie. Il est caractérisé par une haute conductance (4nS dans du KCl 1M) à des faibles différences de potentiel et des fermetures vers des niveaux de conductance inférieurs suite à l’application de voltages élevés. La selectivité de l’état de haute conductance est anionique alors que celle du principal état de faible conductance est fortement cationique. La structure secondaire et la fonction est bien conservée chez les animaux, les plantes et les champignons alors que les séquences sont très différentes (moins de 30% d’identités). Au sein des différents groupes, quelques isoformes coexistent.<p>La première partie du travail consiste à étudier l’évolution des isoformes de VDAC, à déterminer le nombre et les propriétés des isoformes. Nous montrons que les végétaux possèdent plus d’isoformes que les mammifères et que celles-ci sont également moins bien conservées. Nous avons défini trois classes d’isoformes sur base de leur charge nette :faiblement, moyennement ou fortement chargées. Les VDAC fortement exprimés et très bien conservés chez les champignons, les plantes et les animaux sont moyennement chargés. A l’opposé, les isoformes portant les plus hautes charges nettes sont très divergentes et peu exprimées. Ces particularités permettent pour la première fois de comparer les isoformes de groupes évolutivement distants.<p>Ensuite, pour relier la structure et la topologie du VDAC à sa fonction, nous avons construit un modèle topologique. Il consiste en feuillet bêta de 18 brins antiparallèles reployés de manière à former un tonneau transmembranaire présentant une courte hélice alpha à son extrémité aminoterminale. Le modèle est compatible avec les séquences de VDAC fongiques, végétaux et animaux. Il rend compte des résultats expérimentaux obtenus par spectroscopie infrarouge et par microscopie électronique de cristaux 2D. Enfin, les résultats d’études topologiques et fonctionnelles publiées dans la littérature supportent également notre modèle.<p>Nos travaux concernant le VDAC32 de Phaseolus coccineus a permis d’améliorer le protocole de purification et d’en obtenir la séquence. La structure et la stabilité du VDAC32 a été étudiée par spectroscopie infrarouge. L’étude de l’orientation du VDAC à l’aide de lumière infrarouge polarisée se base sur des modèles définissant deux angles, alpha et bêta correspondant à l’inclinaison de l’axe du tonneau par rapport à la normale à la membrane et l’inclinaison des brins par rapport à l’axe du tonneau. Nous proposons que l’angle alpha dépend également de l’asymétrie de la protéine. Nos mesures en spectroscopie infrarouge indiquent que la présence du VDAC diminue la température de transition de la membrane et que la structure protéique est sensible à la transition de phase des lipides membranaires. Enfin, nous montrons que la structure du VDAC est modifiée quand le rapport lipides/protéines diminue. L’orientation des brins bêta se rapproche de l’axe et les chaînes latérales des tyrosines deviennent moins ordonnées.<p>Les VDAC sont insérés dans la membrane mitochondriale qui contient environ 5% de stérols. Certains auteurs ont détecté le VDAC dans les membranes plasmiques. Ces dernières sont beaucoup plus riches en stérols. Nous montrons dans ce travail que le VDAC possède la même fonction dans des membranes contenant 0% ou 5% de stérols alors que sa structure est légèrement modifiée. Par contre, en présence de hautes concentrations en stérols, la fonction du VDAC est sensiblement altérée. Ces résultats suggèrent que le VDAC a des propriétés différentes dans la membrane plasmique et dans l’enveloppe de la mitochondrie.<p> / Doctorat en sciences agronomiques et ingénierie biologique / info:eu-repo/semantics/nonPublished

Chez les végétaux, peu de canaux ioniques sont identifiés moléculairement. Nos travaux, par l’apport de preuves fonctionnelles, mettent en évidence les propriétés électrophysiologiques d’une protéine de la membrane mitochondriale externe (MOM) de Phaseolus coccineus, VDAC32. Nous montrons que cette protéine forme un canal partageant plusieurs caractéristiques électrophysiologiques typiques des canaux anioniques voltages dépendants (VDACs) (cinétique d'ouverture et de fermeture, sensibilité au voltage, conductance relativement grande, courbe de voltage dépendance en forme de cloche). <p>Nous avons constaté que la concentration saline avait un effet sur la voltage-dépendance du canal. En effet, le VDAC devient insensible à la différence de potentiel appliquée lorsqu'il est reconstitué dans des concentrations physiologiques en sel. Nombreuses sont les expériences réalisées dans des conditions non physiologiques (1 M KCl), mais nous montrons dans ce travail que le canal ne se comporte pas de la même manière en conditions physiologiques (0,1 M KCl).<p>La première partie de notre travail a été consacrée à l’étude de l’effet du cholestérol et deux phytostérols les plus abondants (sitostérol et stigmastérol) sur la voltage-dépendance du VDAC. Dans ce chapitre, nous avons montré l’effet des stérols sur la fonction des canaux ioniques au niveau moléculaire. Le rôle des stérols sur la sélectivité et la voltage-dépendance du VDAC a été mis en évidence. L’étude des phytostérols a permis de comprendre comment les propriétés du VDAC peuvent être modulées avec le type de stérol et son abondance dans la membrane. De même, la réversibilité de l’effet des phytostérols sur le VDAC en présence de la Méthyle-β-cyclodextrine a été prouvée. La conductance unitaire n’était pas affectée par l’addition des stérols.<p>Le deuxième chapitre de cette thèse a été consacré à l’étude des deux principaux phospholipides membranaires ;la phosphatidylcholine (PC) et phosphatidyl-éthalamine (PE). Il a été montré qu’à des concentrations salines similaires à celles trouvées in vivo, la voltage-dépendance du VDAC est inhibée en présence de membrane formée de PC mais pas en présence de membrane formée de PE et/ou PE méthylé une fois et deux fois. De même, la voltage-dépendance est restaurée suite à l’ajout de 2% de phytostérol ou de 2% de PE ou lorsque le degré de méthylation de la choline diminue. L’effet des stérols sur la voltage-dépendance est réversible. Nous avons montré que la sélectivité aux anions augment lorsque le degré de méthylation de la choline diminue tandis que la conductance unitaire du canal est invariable.<p>Nos résultats indiquent que l’interaction lipide-protéine est essentielle pour la régulation de l’activité du canal VDAC. La nature de la tête polaire des lipides est déterminante pour cette régulation ce qui suggère qu’elle s’effectue au niveau de l’interface membrane-solution. <p>La suite de nos travaux nous a conduit à l’étude de l’effet du cation monovalent, divalent et trivalent sur le VDAC. Nous avons montré que la voltage-dépendance est perdue dans des concentrations faibles en KCl (100 mM) et que cette dernière est restaurée en présence de 800 mmolale en KCl ou 100 mM de calcium ou 30 mM de lanthane. Ces résultats suggèrent que la restauration de la voltage-dépendance à des faibles concentrations en sel (100 mmolale) impliquerait un effet électrostatique/In plants, only some ion channels are identified molecularly. By providing functional evidence, our work highlights electrophysiological properties of the outer mitochondrial membrane (MOM) protein of Phaseolus coccineus, VDAC32. We show that this protein forms a channel sharing several typical electrophysiological characteristics of voltages dependent anion channels (VDACs) (gating kinetics, voltage sensitivity, relatively large conductance, voltage dependence curve bell-shaped).<p>We found that the salt concentration had an effect on the voltage-dependence of channel. Indeed, VDAC becomes insensitive to the applied potential difference when it was reconstituted in physiological salt concentrations. The greater part of the experiments were performed under non-physiological conditions (1 M KCl), but we show in our work that the channel does not have the same behavior under physiological conditions (0.1 M KCl).<p>The first part of our work has been devoted to the study of the effect of cholesterol and the two most abundant phytosterols (sitosterol and stigmasterol) on the VDAC voltage dependence. In this chapter, we have shown the effect of sterols on ion channel function at the molecular level. The role of sterols on the selectivity and the voltage-dependence of VDAC was highlighted. The study of phytosterols helped us to understand how the properties of VDAC can be modulated with the type of sterol and its abundance in the membrane. Similarly, the reversibility of the effect of phytosterols on the VDAC in the presence of Methyl-β-cyclodextrin has been proven. The unit conductance was not affected by the addition of sterols.<p>The second chapter of this thesis was devoted to the study of the two major membrane phospholipids, phosphatidylcholine (PC) and phosphatidylethalamine (PE). It has been shown that in similar salt concentrations to those found in vivo, the VDAC voltage-dependence is inhibited in the presence of membrane formed by PC but not in the presence of membrane formed by PE and/or PE methylated once and two times. Similarly, the voltage-dependence is recovered following the addition of 2% of phytosterol or 2% of PE or when the degree of methylation of choline decreases. The effect of sterols on the voltage-dependence is reversible. We have shown that the anion selectivity increases when the degree of methylation of choline decreases while the unitary conductance of the channel is invariable.<p>Our results indicate that lipid-protein interaction is essential for the regulation of the activity of VDAC channel. The nature of the lipids polar head is crucial for this regulation suggesting that it occurs at the membrane-solution interface.<p>The rest of our work has led us to study the effect of monovalent, divalent and trivalent cation on VDAC. We have shown that the voltage-dependence is lost in low concentrations of KCl (100 mM) and it is restored in the presence of 800 mmolale of KCl or 100 mM of calcium or 30 mM of lanthanum. These results suggest that the restoration of the voltage-dependence at low salt concentrations (100 mmolale) involve an electrostatic effect.<p> / Doctorat en Sciences agronomiques et ingénierie biologique / info:eu-repo/semantics/nonPublished

Indiana University-Purdue University Indianapolis (IUPUI) / Friedreich’s Ataxia (FRDA) is a rare and poorly understood autosomal recessive disease caused by a pathological deficiency of the mitochondrial protein frataxin. Patients suffer neurodegeneration, ataxia, diabetes, and heart failure. In an effort to understand the mechanisms of heart failure in FRDA, we investigated the role of the protein modification acetylation, which is highly abundant on mitochondrial proteins and has been implicated in regulating intermediary metabolism. Using mouse models of FRDA, we found that cardiac frataxin deficiency causes progressive hyperacetylation of mitochondrial proteins which is correlated with loss of respiratory chain subunits and an altered mitochondrial redox state. Mitochondrial protein hyperacetylation could be reversed by the mitochondria-localized deacetylase SIRT3 in vitro, suggesting a defect in endogenous SIRT3 activity. Consistently, frataxin-deficient cardiac mitochondria showed significantly decreased rates of fatty acid oxidation and complete oxidation to carbon dioxide. However, the degree of protein hyperacetylation in FRDA could not be fully explained by SIRT3 loss. Our data suggested that intermediary metabolites and perhaps acetyl-CoA, which is required for protein acetylation, are accumulating in frataxin-deficient mitochondria. Upon testing the hypothesis that mitochondrial protein acetylation is non-enzymatic, we found that the minimal chemical conditions of the mitochondrial matrix are sufficient to cause widespread non-enzymatic protein acetylation in vitro. These data suggest that mitochondrial protein hyperacetylation in FRDA cardiomyopathy mediates progressive post-translational suppression of mitochondrial oxidative pathways which is caused by a combination of SIRT3 deficiency and, likely, an accumulation of unoxidized acetyl-CoA capable of initiating non-enzymatic protein acetylation. These findings provide novel insight into the mechanisms underlying a poorly understood and fatal cardiomyopathy and highlight a fundamental biochemical mechanism that had been previously overlooked in biological systems.