In the past, aminocyclohexanol rings have been successfully utilized as pH-triggered molecular switches in various trans-2-aminocyclohexanol derivatives. By changing the groups on the amine nitrogen, these models provided a wide pH range in which a switch can occur. The pH-induced switch of conformation was monitored by 1H-NMR spectroscopy. The models were also incorporated into the bilayer membrane of liposome structures and tested for their ability to disrupt their membrane upon their conformational flip induced by a decrease in pH. In this work, the amide bond has been studied as a molecular switch and various amide derivatives have been tested for their potential as lipid-like compounds that also exhibit a pH-sensitive conformational flip. The conformational analysis of these compounds was achieved by various NMR techniques and NMR acid-base titration studies were utilized to estimate the pKa of a number of the compounds described.

Les précurseurs de ligands base de Schiff électro-donneurs et électro-accepteurs R-ONOH₂ sont préparés par réaction de monocondensation entre les β-dicétones appropriées et respectivement le 1,2- et le 1,2-4-nitro-aminophénol. Ils existent exclusivement sous leurs formes tautomériques céto-énamine en solution et à l'état solide. Dans les complexes correspondants de NiII et de CuII, le métal adopte une géométrie plan carré et est coordiné par les atomes d'azote et d'oxygène du ligand dianionique tridentate et par l'azote du coligand pyridine. L'hyperpolarisabilité quadratique, déterminée par la technique DHL est très élevée. La substitution de la pyridine par la 4,4'-bipyridine conduit systématiquement aux complexes dimériques correspondants. Un composé similaire comportant l'espaceur bis(4-pyridyle)acétylène est formé après réaction de couplage croisé de Sonogashira. Cette même réaction de couplage croisé entre les blocs de construction électrodonneurs et électro-accepteur permettent de préparer le système «push-pull» D-π-A désiré. Les réponses ONL du second ordre des complexes contenant le ligand électro-actif methylène-pyrane peuvent être modulées par bi- (R = An) et tétra- (R = Fc) oxydation réversible avec formation/rupture d'une liaison C-C, constituant ainsi un nouvel exemple de commutateur ONL-2 réversible. / Electron donating and electron withdrawing ligand precursors R-ONOH₂ were prepared by monocondensation reaction of the appropriate β-diketones and 1,2- and 1,2-4-nitro-aminophenol, respectively. They do exclusively exist as their enaminone tautomeric form both in solid-state and in solution phase. In their corresponding Schiff base complexes of NiII and CuII, the central metal is tetracoordinated in a square-planar environment. The coordination sphere is formed by the nitrogen and oxygen atoms of the dianionic tridentate ligand and the fourth coordination site is occupied by the nitrogen atom of the pyridine co-ligand. The derivative exhibited a high quadratic hyperpolarizability (β1.91) determined by the HLS technique. Substitution of 4,4’-bipyridine for pyridine invariably leads to the formation of the respective dimers [(R-ONO)MII(4,4’-bipy)MII(ONO-R)]. A similar compound having the bis(4-pyridyle)acetylene as spacer was formed upon cross-coupling Sonogashira reaction with ethynylpyridine chlorhydrate. The same cross-coupling reaction carried out between the electron releasing and electron withdrawing building blocks, respectively, allowed the preparation of the expected «push-pull» D-π-A system. The second-order NLO responses of compounds bearing a redox active methylenepyran ligand can be modulated upon reversible bi- (R = An) and tetra- (R = Fc) oxydation involving C-C bond formation/breaking reactions, thus forming a new class of NLO molecular switches.

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La délivrance intracytoplasmique de petites molécules hydrophiles et de gènes (ADN, ARN) est un défi majeur pour l’industrie pharmaceutique, puisque ces composés sont incapables de franchir les membranes biologiques par eux-mêmes. L’utilisation de nanovecteurs lipidiques permet de surmonter les étapes d’instabilité sanguine du gène thérapeutique, de pénétration cellulaire et d’échappement endosomal. Nous reportons dans cette thèse l’élaboration de nouveaux vecteurs lipidiques pH-sensibles, basés sur une bascule moléculaire capable de changer de conformation et déstabiliser le nanovecteur après protonation à pH acide, favorisant ainsi l’échappement endosomal du fragile contenu thérapeutique. Ce mécanisme de pH-sensibilité est non reporté dans la littérature jusqu’alors. Dans un premier temps, l’élaboration de lipides bascules pH-sensibles non-cationiques destinés à la délivrance liposomale de principes actifs hydrophiles est reportée. Ce premier travail introduit les lipides bascules, valide l’implication de la bascule moléculaire pH-sensible et apporte une première preuve de concept in vitro de faisabilité. Dans un second temps est introduit l’utilisation de nouveaux lipides bascules cationiques pH-sensibles pour la thérapie génique (délivrance in vitro et in vivo de siRNA), validant encore une fois l’implication de la bascule moléculaire dans l’efficacité de délivrance intracytoplasmique des siRNA. A l’issue de cette thèse sont identifiés deux lipides bascules (2 et CSL3) capables d’être introduits dans des nanoparticules lipidiques pour la délivrance de drogues et de gènes respectivement. De telles formulations permettraient la délivrance intracytoplasmique de composés hydrophiles thérapeutiques (drogues, gènes) pour le traitement du cancer ou pour des applications d’édition génomique. / Intracytoplasmic delivery of small hydrophilic molecules and genes (DNA, RNA) is a major challenge for the pharmaceutical industry, since these compounds are unable to cross biological membranes by themselves. Use of lipid nanocarriers enables overcoming the stages of blood instability of the therapeutic gene, cellular penetration, and endosomal escape. In this thesis, we report the development of new pH-sensitive lipid carriers, based on a molecular switch capable of changing its conformation upon protonation and destabilizing the nanocarrier, thus favoring endosomal escape of the therapeutic content. This pH-sensitivity mechanism has not been reported in the literature to date. Firstly, we report the elaboration of non-cationic pH-sensitive switchable lipids for liposomal delivery of hydrophilic active ingredients. This initial work introduces switchable lipids, validates the involvement of the pH-sensitive molecular switch, and provides early evidence of in vitro concept feasibility. Secondly, we present the use of pH-sensitive cationic switchable lipids for gene therapy (siRNA delivery in vitro and in vivo), again validating the involvement of the molecular switch in the effectiveness of intracytoplasmic delivery of siRNA. The two lead compounds identified during this thesis (2 and CSL3) can be included into lipid nanoparticles for drug and gene delivery, respectively. Such formulations allow intracytoplasmic delivery of therapeutic hydrophilic compounds (drugs, genes) and could be used to treat diseases such as cancer or for genome editing applications.

The small ribosomal subunit gene of the Chaetomium thermophilum DSM 1495 is invaded by a nested intron at position mS1247, which is composed of a group I intron encoding a LAGLIDADG open reading frame interrupted by an internal group II intron. The first objective was to examine if splicing of the internal intron could reconstitute the coding regions and facilitate the expression of an active homing endonuclease. Using in vitro transcription assays, the group II intron was shown to self-splice only under high salt concentration. Both in vitro endonuclease and cleavage mapping assays suggested that the nested intron encodes an active homing endonuclease which cleaves near the intron insertion site. This composite arrangement hinted that the group II intron could be regulatory with regards to the expression of the homing endonuclease. Constructs were generated where the codon-optimized open reading frame was interrupted with group IIA1 or IIB introns. The concentration of the magnesium in the media sufficient for splicing was determined by the Reverse Transcriptase-Polymerase Chain Reaction analyses from the bacterial cells grown under various magnesium concentrations. Further, the in vivo endonuclease assay showed that magnesium chloride stimulated the expression of a functional protein but the addition of cobalt chloride to the growth media antagonized the expression. This study showed that the homing endonuclease expression in Escherichia coli can be regulated by manipulating the splicing efficiency of the group II introns which may have implications in genome engineering as potential ‘on/off switch’ for temporal regulation of homing endonuclease expression . Another objective was to characterize native homing endonucleases, cytb.i3ORF and I-OmiI encoded within fungal mitochondrial DNAs, which were difficult to express and purify. For these, an alternative approach was used where two compatible plasmids, HEase.pET28b (+)-kanamycin and substrate.pUC57-chloramphenicol, based on the antibiotic markers were maintained in Escherichia coli BL21 (DE3). The in vivo endonuclease assays demonstrated that these homing endonucleases were able to cleave the substrate plasmids when expressed, leading to the loss of the antibiotic markers and thereby providing an indirect approach to screen for potential active homing endonucleases before one invests effort into optimizing protein overexpression and purification strategies. / October 2016

La conception et la préparation de réseaux moléculaires organiques et hybrides à l’état cristallin ont été envisagées par un processus itératif d’auto-assemblage entre des briques de construction moléculaires préprogrammées et complémentaires appelées tectons. Cette approche est basée sur la reconnaissance moléculaire de modules dicationiques, donneurs de liaisons hydrogène, et d’unités anioniques, accepteurs de liaisons hydrogène. Ainsi, la combinaison des tectons moléculaires de la famille des bis-benzimidazoliums, intrinsèquement luminescents, avec des anions polycyanométallates conduit à la formation de réseaux moléculaires hybrides luminescents à l’état cristallin. Il a été procédé à l'étude des propriétés photophysiques de ces réseaux à l'état solide. De même, l’association de bis-amidiniums,briques dicationiques, à des anions de type azodibenzoates mène à des assemblages cristallins possédant la propriété de photo-commutation, c’est-à-dire conduisant à une isomérisation sous stimulus lumineux. / The design and synthesis of organic and hybrid molecular networks in the crystalline state has been investigated using iterative self-assembly processes involving preprogrammed complementary molecular building blocks called tectons. This approach is based on molecular recognition events between dicationic hydrogen bond donors and anionic hydrogen bond acceptors tectons. Thus, the combination of intrinsically luminescent molecular tectons belonging to the family of cationic bis-benzimidazoliums with polycyanometallates anions leads to the formation of luminescent hybrid molecular networks in the crystalline state. Their optical properties have been studied in the solid state. Similarly, the association of bis-amidiniums, dicationic bricks, to azodibenzoates type anions leads to crystalline assemblies presenting photo-switching property, i.e. the ability to isomerise under light stimulus.