Cette thèse a les objectifs suivants :1. Mieux comprendre comment les isotope du bore dans les sédiments fluviaux modernes enregistrent le régime d’altération à l'échelle du bassin versant. 2. Mieux comprendre comment le « signal » d’altération porté par les sédiments fluviaux est transféré des zones sources vers l’environnement de dépôt. 3. Déterminer si les isotopes du B dans les dépôts sédimentaires (paléo-canaux) peuvent être utilisés pour reconstituer les conditions paléo-climatiques et paléo-environnementales et ainsi révéler comment l’altération continentale au sens large (production et transport de sédiments) a réagi à la variabilité climatique au cours du dernier cycle glaciaire-interglaciaire (derniers 100 ka). Ces objectifs ont été examinés en étudiant les matériaux fluviaux des fleuves Gandak (Himalaya) et Murrumbidgee (NSW, Australie) et des dépôts de sédiments fluviaux de la Riverine Plain (basin versant de Murrumbidgee). La connaissance des paramètres qui contrôlent le fractionnement isotopique du bore des sédiments fluviaux au cours de la formation et du transport a d'abord été acquise dans les systèmes modernes, puis appliquée à d'anciens dépôts de paléochenaux. / This thesis has the following objectives: 1) To better understand how boron isotopes in modern fluvial sediments record the weathering regime at the catchment scale. 2) To better understand how the weathering “signal” carried by river sediments is transferred from source areas to the depositional environment. 3) To determine if boron isotopes in sediment deposits (paleochannels) can be used to reconstruct paleo-weathering and paleo-environmental conditions and reveal how continental weathering at large (production and sediment transport) responds to climatic variability over the last glacial-interglacial cycle (last 100 ka). These objectives were addressed by studying fluvial material from the Gandak (Himalayas) and Murrumbidgee (NSW, Australia) Rivers and fluvial sediment deposits from the Riverine Plain (Murrumbidgee catchment, Australia). Knowledge of the parameters that control boron isotope fractionation of river sediment during formation and transport was first gained in the modern systems and then applied to ancient paleochannel deposits.

Appropriately constructed pollutant export models can help set management priorities for catchments, identify critical pollutant source areas, and are important tools for developing and evaluating economically viable ways of minimising surface water pollution.¶ This thesis presents a comparison, an evaluation and an integration of models for predicting the export of environmental pollutants, in particular sediment, through river systems. A review of the capabilities and limitations of current water quality modelling approaches is made. Several water quality and quantity modelling approaches are applied and evaluated in the catchment of the upper Murrumbidgee River.¶ The IHACRES rainfall-runoff model and a simple hydrologic routing model are applied with the aim of developing a capacity to predict streamflow at various catchment scales and to enable integration with other pollutant load estimation techniques. Methods for calculating pollutant loads from observed pollutant concentration and modelled streamflow data are also investigated. Sediment export is estimated using these methods over a 10-year period for two case study subcatchments. Approaches for water quality sampling are discussed and a novel monitoring program using rising stage siphon samplers is presented. Results from a refinement of the Sediment River Network model in the upper Murrumbidgee catchment (SedNet-UM) are presented. The model provides a capacity to quantify sediment source, transport and to simulate the effects of management change in the catchment. The investigation of the model includes rigorous examination of the behaviour of the model through sensitivity assessment and comparison with other sediment modelling studies. The major conclusion reached through sensitivity assessment was that the outputs of the model are most sensitive to perturbation of the hydrologic parameters of the model.¶ The SedNet-UM application demonstrates that it is possible to construct stream pollutant models that assist in prioritising management across catchment scales. It can be concluded that SedNet and similar variants have much potential to address common resource management issues requiring the identification of the source, propagation and fate of environmental pollutants. In addition, incorporating the strengths of a conceptual rainfall-runoff model and the semi-distributed SedNet model has been identified as very useful for the future prediction of environmental pollutant export.

Thesis (Ph.D.)--University of Melbourne, School of Anthropology,Geography and Environmental Studies and the Dept. of Civil and Environmental Engineering, 2006. / Typescript. Includes bibliographical references.

Variable groundwater quality in complex aquifer-aquitard systems presents a challenge for sustainable groundwater development. In the Lower Murrumbidgee alluvial fan of the Murray-Darling Basin in semi arid inland Australia, shallow groundwater is saline (12000 &micro S/cm) and locally contaminated by nitrate. Deep fresh aquifers (150 &micro S/cm), developed as an irrigation water supply, were thought to be protected from downwards leakage by laterally extensive aquitards. However, hydrochemical sampling, augmented by historic data, revealed that aquifer salinisation (400 to 4000 &micro S/cm) had occurred at some sites to 50 m depth since the mid 1980s. Aquitard windows, landscape depositional features at a scale of 10s to 100s of metres which are rarely detected by conventional investigations, were proposed as conduits for rapid downwards leakage in stressed systems. Intensive research was conducted at the Tubbo site where downhole geophysical logging and minimally disturbed cores were used to describe a saline clayey silt to 15m depth, an indurated clayey sand and 2 deep deposits of hard clayey silt. Fracturing was inferred by the scale dependency of aquitard permeability (Kv 10E-11 to 10E-6 m/s). Lithological variation near the surface was delineated by electrical imaging which revealed a 40m wide aquitard window beneath a veneer of smectite clay. Intensive monitoring of groundwater pressures in six piezometers (23-96 m depth) near the Tubbo irrigation bore and two other peizometers upgradient, indicated that the indurated clayey sand formed an effective hydraulic barrier but the deep silty deposits were spatially discontinuous. Groundwater samples were collected before, three times during, and after the 1998-99 irrigation season. A large, but delayed TDS increase occurred in the shallow aquifer and small pulses of saline water were sustained in the middle aquifer but shortlived in the deep aquifer. Hydrochemical and isotopic data dC-13, dH-2, dO-18, C-14 and H-3) showed the middle aquifer mixing with the deep aquifer, though retaining the signature of a palaeowater. Hydrochemical changes were accounted for with PHREEQC inverse mass balance models for the shallow aquifer. Mixing of aquifer water with 20-70% saline porewater from the upper aquitard occurred, together with ion exchange and NaCl dissolution. Based on an axisymmetric radial FEFLOW model, 5-30% of the volume pumped was accounted for by vertical leakage from the middle aquifer. Leakage from the shallow aquifer was small but significant, as it allowed high salinity water to migrate. Permeability and compressible storage measurements (Ss 10E-5 to 10E-4 /m) were used to constrain model calibration, and to show that direct mixing occurred mainly via aquitard windows at depth, and between the shallow and middle aquifers via leaky boreholes. Fracture flow and aquifer-aquitard interaction by diffusion were of secondary importance.

Dams and weirs are widely implicated in large-scale declines in both the range and abundance of aquatic fauna. Although many factors are involved, such declines are commonly attributed to the prevention or reduction of migration, reductions in available habitat, alteration of natural flow regimes and changes to physicochemical characteristics. In Australia, studies into the ecological effects of these impacts are limited, and have concentrated mainly on species of recreational and commercial importance. Subsequently, the adverse effects of dams and weirs, and suitable methods of mitigation, remain largely unknown for many other taxa. Therefore, the major aim of this thesis is to investigate the ecological effects of dam and weir construction on previously unstudied migratory assemblages of fish and macroinvertebrates in the Murray-Darling Basin. It is anticipated that the results of these studies will feed back into improved management strategies that help arrest the previously observed declines of aquatic fauna. Initially, fish communities were sampled, by boat electrofishing, from both reference sites and downstream of Balranald and Redbank weirs on the lower reaches of the Murrumbidgee River, Australia. Sampling was stratified over large spatial and temporal scales to gain a comprehensive understanding of species most affected by the presence of these two barriers. In general, the weirs obstructed fish migrations during summer and autumn and many species of small-bodied fish such as Australian smelt, western carp gudgeon, fly-specked hardyhead and crimson-spotted rainbowfish accumulated downstream of Balranald Weir. In addition, downstream accumulations of juveniles of larger-bodied species such as bony herring, common carp and goldfish were also detected. Although many previous studies had either documented or hypothesised that upstream migrating fish accumulate downstream of migration barriers, none attempted to quantify the size of such populations. Therefore, a simple but efficient method to estimate the size of migratory populations was assessed at the Balranald Weir site. The application of two commonly used estimation techniques yielded relatively reliable results for seven species that accumulated downstream of the weir. Population size estimates were greatest for most species during summer and autumn, where accumulations as high as 800 fish per day were detected. The largest calculated population size estimates, in addition to the greatest temporal variation, of any individual species was observed in bony herring. Given the simplicity of the technique and the relative accuracy of population estimates, it was concluded that these methods could easily be applied to other weirs where the size of migratory populations is of particular interest. A study investigating the effects of Yanco Weir on the diets of three migratory percichthyid species, Murray cod, trout cod and golden perch was also conducted. Observed spatial variation in a number of trophic processes strongly implicated Yanco Weir as a major contributor to increased competition among percichthyid species on the Murrumbidgee River. The greater relative abundance of percichthyids from downstream samples, combined with increases in dietary overlap and a greater percentage of empty stomachs, also suggested percichthyids may be significantly affecting the relative abundance of potential prey items such as freshwater prawns and Australian smelt. These significant changes in dietary composition were likely related to migratory behaviour, as these species accumulated downstream of the weir, and could be readily expected at other sites where passage is obstructed. It was suggested that the construction of suitable fish passage facilities would effectively reduce the probability of migratory fish accumulating and, subsequently, potential effects of dams and weirs on trophic processes. Since it was established that dams and weirs of the Murrumbidgee River were significantly affecting migratory fish communities, an innovative but relatively inexpensive fishway design, the Deelder fish lock (after Deelder, 1958), was constructed and assessed for wider application throughout the Murray-Darling Basin. The Deelder lock was effective at mitigating the effects of Balranald Weir by providing passage for a wide range of size classes and species of fish; but importantly, the structure enabled the passage of most species previously observed to accumulate downstream of the structure. Most significant was the ability of the fish lock to pass substantial numbers of small-bodied fish, which were previously not considered migratory, suggesting that these species should be considered when developing options to mitigate the effects of other dams and weirs throughout the Murray-Darling Basin. A significant finding of this study was the realisation that substantially more species and size classes of Australian native fish are migratory than previously thought. Subsequently, it is recommended that, when designing facilities to mitigate the effects of a dam or weir, the structure of the entire migratory community is considered when developing operating parameters. Various options for mitigating the effects of dams and weirs are discussed, but it was concluded that the construction of effective fishways would be the most appropriate means of restoring migration pathways to Australian native fish. A strategic approach for assessing and adaptively mitigating the effects of dams and weirs is presented and discussed.

Six rivers within the upper Mumbidgee catchment were sampled for larval and juvenile fish. The rivers represented both regulated and unregulated flow regimes and varied widely in size. There was wide variation in the larval fish communities supported by each river, both in terms of the species diversity and total abundance of fish sampled. The highly regulated reach of the Mumbidgee River sampled during this study had the highest numbers of native species and native individuals of any river sampled. In the two rivers selected for further study, the Murmmbidgee and Goodradigbee, there was a high level of inter-annual consistency in the species composition within the reaches sampled, despite considerable change in the temperature and flow regimes of both rivers. This indicates that at least some spawning of those species sampled may occur each year, regardless of environmental conditions. Estimates of the relative abundance of each species sampled changed markedly between years, and it is argued, on the basis of growth information contained in the otoliths, that differential survival of larvae and juveniles was largely responsible for this shift in relative abundance. Otolith microstructure provided information on the date of spawning and early growth patterns of all species sampled in the upper Mumumbidgee catchment. In addition to determining the age and thus 'birth-date' of an individual, the effect of a particular event or series of events has on growth, and subsequent survival, is permanently recorded in the otolith microstructure. This enables accurate back-calculation and correlation to management actions or natural events. No other research tool has this ability to retrospectively assess, on a daily basis, the impacts of management actions on condition and subsequent survival of fish larvae. Species sampled could be separated into three groups based on spawning requirements; those linked with flow, those linked with temperature and generalist species that appear to have river independent cues, such as photoperiod or moon phase. Patterns in growth rate during the early life history stages enabled quantification of the consequences of variation in environmental conditions on the survival and recruitment of various species. Growth was not always highly correlated with water temperature, in fact, for mountain galaxias, high temperatures appear to negatively affect larval condition and subsequent survival. Conversely, carp exhibited a strategy more consistent with common perceptions, with growth and survival increasing with increasing temperature. The study uncovered spawning and growth patterns that were unexpected. Age analysis of western carp gudgeon demonstrated that they had undertaken a mid-winter spawning, when the water temperature in the main channel was far lower than that at which spawning was previously recorded for this species. Redfin perch from the unregulated Goodradigbee River exhibited growth rates exceeding the published upper limits for this and other closely related species. This growth could not be correlated with either temperature or flow, indicating that there are additional factors that dominate growth rates of redfin perch in the Goodradigbee River. The proportion and abundance of native species alone is not necessarily indicative of a 'healthy' or pristine system; some native species may be positively affected by river regulation, at least as juveniles. Comparison of the current larval fish community with likely pre-European fish communities does provide an indication of change to the system. The results of this study suggest that larval fish growth rates can be strongly influenced by environmental conditions, thus providing a powerful tool for monitoring future change and the factors which cause it. This study has demonstrated the value of larval and juvenile fish age and growth information, derived from otolith microstructure techniques, for many aspects of river management. Current river management priorities for which these techniques provide unique information include the determination of environmental flow regimes and the control of undesirable exotic species such as carp.