The brain processes information sensed from the environment and guides behaviour. A fundamental component in this process is the storage and retrieval of past experiences as memories, which relies on the hippocampal formation. Although there has been a great progress in understanding the underlying neural code by which neurons communicate information, there are still open questions. Neural activity can be measured extracellularly as either spikes or field potentials. Isolated spikes and bursts of high-frequency spikes followed by silent periods can transmit messages to distant networks. The local field potential (LFP) reflects synaptic activity within a local network. The interplay between the two has been linked to cognitive functions, such as memory, attention and decision making. However, the code by which this neural communication is achieved is not well understood. We investigated a mechanism by which local network information contained in LFP rhythms can be transmitted to distant networks in the formof spike patterns fired by bursting neurons. Since rhythms within different frequency bands are prevalent during behavioural states, we studied this encoding during different states within the hippocampal formation. In the first paper, using a computational model we show that bursts of different size preferentially lock to the phase of the dominant rhythm within the LFP.We also present examples showing that bursting activity in the subiculum of an anaesthetised rat was phase-locked to delta or theta rhythms as predicted by the model. In the second paper, we explored possible neural codes by which bursting neurons can encode features of the LFP.We used the computational model reported in the first paper and analysed recordings from the subiculum of anaesthetised rats and the medial entorhinal cortex of an awake behaving rat. We show that bursting neurons encoded information about the instantaneous voltage, phase, slope and/or amplitude of the dominant LFP rhythm (delta or theta) in their firing rate. In addition, some neurons encoded about 10-15% of this information in intra-burst spike counts. We subsequently studied how the interactions between delta or theta rhythms can transfer information between different areas within the hippocampal formation. In the third paper, we show that delta and theta rhythms can act as separate routes for simultaneously transferring segregate information between the hippocampus and the subiculum of anaesthetised mice. We found that the phase of the rhythms conveyed more information than amplitude. We next investigated whether neurodegenerative pathology affects this information exchange. We compared information transfer within the hippocampal formation of young transgenic mice exhibiting Alzheimer’s disease-like pathology and healthy aged-matched control mice and show that at early stages of the disease the information transmission by LFP rhythm interactions appears to be intact but with some differences. The outcome of this project supports a burst code for relaying information about local network activity to downstream neurons and underscores the importance of LFP phase, which provides a reference time frame for coordinating neural activity, in information exchange between neural networks.

A stochastic leaky integrate-and-fire neuron model was implemented in this study to simulate the spiking activity of the electrosensory "P-unit" receptor neurons of the weakly electric fish Apteronotus leptorhynchus. In the context of sensory coding, these cells have been previously shown to respond in experiment to natural random narrowband signals with either a linear or nonlinear coding scheme, depending on the intrinsic firing rate of the cell in the absence of external stimulation. It was hypothesised in this study that this duality is due to the relation of the stimulus to the neuron's excitation threshold. This hypothesis was validated with the model by lowering the threshold of the neuron or increasing its intrinsic noise, or randomness, either of which made the relation between firing rate and input strength more linear. Furthermore, synchronous P-unit firing to a common input also plays a role in decoding the stimulus at deeper levels of the neural pathways. Synchronisation and desynchronisation between multiple model responses for different types of natural communication signals were shown to agree with experimental observations. A novel result of resonance-induced synchrony enhancement of P-units to certain communication frequencies was also found.

Neurons communicate by action potentials. This process can be described by very detailed biochemical models of neuronal membrane and its channels, or by simpler phenomenological models of membrane potential (integrate-and- fire models) or even by very abstract models when only time of spikes are considered. We took one particular description - stochastic leaky integrate-and-fire model - and compared it with recorded in-vivo intracellular activity of the neuron. We estimated parameters of this model, compared how the model simulation corresponds with a real neuron. It can be concluded that the data are generally consistent with the model. At a more abstract level of description, the spike trains are analyzed without considering exact membrane voltage and one asks how the external stimulus is encoded in the spike train emitted by neurons. There are many neuronal codes described in literature and we focused on the open problem of neural code responsible for spatial hearing in mammals. Several theories explaining the experimental findings have been proposed and we suggest a specific variant of so called slope-encoding model. Neuronal circuit mimick- ing auditory pathway up to the first binaural neuron was constructed and experimental results were reproduced. Finally, we estimated the minimal number of such...

Neurons communicate by action potentials. This process can be described by very detailed biochemical models of neuronal membrane and its channels, or by simpler phenomenological models of membrane potential (integrate-and- fire models) or even by very abstract models when only time of spikes are considered. We took one particular description - stochastic leaky integrate-and-fire model - and compared it with recorded in-vivo intracellular activity of the neuron. We estimated parameters of this model, compared how the model simulation corresponds with a real neuron. It can be concluded that the data are generally consistent with the model. At a more abstract level of description, the spike trains are analyzed without considering exact membrane voltage and one asks how the external stimulus is encoded in the spike train emitted by neurons. There are many neuronal codes described in literature and we focused on the open problem of neural code responsible for spatial hearing in mammals. Several theories explaining the experimental findings have been proposed and we suggest a specific variant of so called slope-encoding model. Neuronal circuit mimick- ing auditory pathway up to the first binaural neuron was constructed and experimental results were reproduced. Finally, we estimated the minimal number of such...

Investigamos o papel de condutâncias iônicas lentas na transmissão/codificação de informação entre neurônios que disparam em rajadas ou bursts. Para isso, desenvolvemos um protocolo experimental no qual a interação em tempo real entre computador e neurônio biológico permite isolar o efeito da dinâmica de um determinado tipo de canal iônico e estudar sua inuência nos mecanismos de codificação de informação. Os experimentos foram realizados com neurônios do gânglio estomatogástrico do siri azul, Callinectes sapidus, que não possuem condutâncias lentas capazes de fazê-los apresentar rajadas de disparos quando in vitro, condição na qual apresentam comportamento quiescente ou disparam tonicamente. Durante os experimentos, alteramos artificialmente o comportamento de um destes neurônios, conectando-o a um computador que introduz uma corrente capaz de fazê-lo apresentar rajadas. Essa corrente possui uma componente senoidal (vinda de um gerador de funções) e uma componente devido a uma condutância iônica lenta modelada matematicamente. A condutância lenta pode ser escolhida entre duas versões: uma em que a condutância é calculada em tempo real, a partir do valor instantâneo do potencial de membrana do neurônio biológico, e outra em que o valor da condutância é oriundo de uma série temporal previamente gravada. A fonte de informação utilizada nos experimentos é um neurônio artificial pré-sináptico, que possui uma distribuição de potenciais de ação (spikes) escolhida pelo experimentador, e é conectado ao neurônio biológico modificado através de um modelo de sinapse química inibidora. A quantidade de informação do neurônio artificial (variabilidade dos padrões de disparo) codificada pelo neurônio biológico é inferida calculando-se a informação mútua média entre eles para as duas versões da condutância lenta (dinâmica ou previamente gravada). Nossos experimentos reproduziram qualitativamente as observações feitas por nosso grupo no circuito pilórico intacto do siri, que possui neurônios conectados por mutua inibição que naturalmente apresentam bursts. Além disso, observamos que vários picos de informação mútua média, presentes quando a condutância é dinâmica, desaparecem quando esta é substituída pela série temporal previamente gravada da condutância. Assim, pudemos confirmar os resultados previamente obtidos com simulações computacionais em que foram utilizados apenas modelos matemáticos e na ausência de ruído e demonstramos que as condutâncias iônicas lentas constituem um mecanismo biofísico que permite a codificação de estímulos sinápticos em neurônios que apresentam rajadas. / We investigated the role of slow ionic conductances on information processing by bursting neurons. A real time experimental protocol was developed to allow interacting computer models and biological neurons to address the effect of dynamical details of a single type of ion channel in information coding mechanisms. We experimented on Callinectes sapidus (blue crab) stomatogastric ganglion neurons. Such neurons were chosen because they do not present the slow conductances that can led to bursting activity in vitro (in such conditions they can be found either in a quiescent or in a tonic firing state). The experiments consisted in artificially changing the behavior of one of these neurons by injecting a computer generated current to achieve bursting. Such current has a sinusoidal component (from a function generator) and a component due to mathematical model of a slow ionic conductance. The slow conductance was implemented in two versions: in one of them the instantaneous value of the conductance is computed in real time and according to the membrane potential of the biological neuron, in another version the value of the conductance simply comes from a time series previously stored in the computer. A pre-synaptic artificial neuron, with a spike distribution chosen by the experimenter, provided input for the biological neuron through an artificial chemical inhibitory synapse. The amount of information (variability of spike patterns from the artificial neuron) coded by the biological neuron was inferred by calculating the average mutual information along stimulus and response bursts for the two conditions of the slow conductance (dynamically calculated or from file previously stored). Our experiments reproduced the results found in intact pyloric central pattern generator bursting neurons connected by mutual inhibition. Moreover, we show that the average mutual information peaks, found when the conductance is dynamically calculated, disappear when we use the previously recorded time series of the conductance. Such results validate those only found previously in numerical simulations in the absence of noise and point the role of the slow ionic conductances in a biophysical mechanism that allow bursting motor neurons to encode in a nontrivial fashion the information they receive through a single synapse.

Sinnessysteme erfassen und verarbeiten staendig die vielfaeltigen und komplexen Reize der Umwelt. Um die funktionellen Eigenschaften eines solchen Systems zu untersuchen, verwendet man jedoch oft relativ einfache, abstrakte Reize. Diese Reize erlauben aber meist nicht, die Funktion des Systems im Verhaltenskontext zu interpretieren. Ferner erhaelt man durch einfache Reize im allgemeinen eine unvollstaendige Beschreibung des Systems. Innerhalb dieser Arbeit zeige ich exemplarisch am Beispiel von auditorischen Rezeptorneuronen von Heuschrecken, wie man natuerliche Stimuli einsetzen kann, um die sensorische Codierung zu untersuchen.Heuschrecken verwenden akustische Kommunikation zur Partnerfindung und -auswahl. Dabei sind die Weibchen hochselektiv bei der Wahl eines Maennchens. Von besonderem Interesse ist daher, inwieweit Informationen ueber Unterschiede zwischen Maennchengesaengen durch die auditorischen Rezeptoren des Weibchens erhalten werden. Wie in der Arbeit gezeigt wird, liefern selbst einzelne Rezeptorneuronen hinreichend Information, um selbst kleine Unterschiede zwischen den Maennchengesaengen zu erkennen. Diese erstaunliche Aufloesung der Gesaenge dient vermutlich der Auswahl von genetisch hochwertigen Partnern. Ferner wird gezeigt, dass auditorische Rezeptoren nicht allgemein viel Information ueber Stimuli liefern, sondern auf spezifische Zeitskalen und Strukturen der natuerlichen Stimuli optimiert sind. Falls sensorische Systeme generell gut auf die jeweilig verhaltensrelevanten Stimuli abgestimmt sind, so kann man diese Stimuli auch automatisch finden. Im letzten Teil der Arbeit wird ein Online-Algorithmus vorgestellt, der dieses Ziel unter Verwendung informationstheoretischer Prinzipien erreicht. Dieser Algorithmus kann in Zukunft dazu dienen, die Effizienz elektrophysiologischer Experimente in beliebigen Systemen zu erhoehen. / In their natural environment, sensory systems process a wealth of complex stimuli. In contrast, most experimental tests of sensory systems employ simple stimuli that can be described by one or two parameters. However, these simple stimuli do usually not allow to relate the function of a specific system to an animal's behaviour. Furthermore, in many cases a complete characterisation of a sensory system cannot be achieved by simple stimuli alone. Within this thesis, I demonstrate how one can employ natural stimuli to study aspects of sensory coding. Grasshoppers use acoustic communication for mate detection and selection. Females show preferences for certain "qualities" of the signals produced by different conspecific males. In this thesis, I investigated how much information female grasshoppers obtain about differences between the mating songs of males. Already single auditory receptor neurons of female grasshoppers encode sufficient information to distinguish even fine variations of male songs. Presumably, this astonishing resolution is needed to single out males of high genetic quality. Furthermore, I show that the ensemble of stimuli that best explores the coding regime of a given receptor has features and time scales that are typical for grasshopper songs. If a close match between the behaviourally relevant stimuli and the sensory system is an evolutionary design principle, then one can extract the relevant stimuli from a given system without prior knowledge. In the last part of the thesis, an online algorithm is introduced, that achieves this goal using information-theoretic principles. This algorithm might help to improve the performance of experiments within the limited time of an electrophysiological recording session.

Neurons can respond to input by firing isolated action potentials or spikes. Sequences of spikes have been linked to the encoding of neuron input. However, many neurons also fire bursts; mechanistically distinct responses consisting of brief high-frequency spike firing. Bursts form separate response symbols but historically have not been thought to encode input. However, recent experimental evidence suggests that bursts can encode input in parallel with tonic spikes. The recognition of bursts as distinct encoding symbols raises important questions; these form the basic aims of this thesis: (1) What inputs do bursts encode? (2) Does burst structure provide extra information about different inputs. (3) Is burst coding robust against the presence of noise; an inherent property of all neural systems? (4) What mechanisms are responsible for burst input encoding? (5) How does burst coding manifest in in-vivo neurons. To answer these questions, bursting is studied using a combination of neuron models and in-vivo hippocampal neuron recordings. Models ranged from neuron-specific cell models to models belonging to three fundamentally different burst dynamic classes (unspecific to any neural region). These classes are defined using concepts from non-linear system theory. Together, analysing these model types with in-vivo recordings provides a specific and general analysis of burst encoding. For neuron-specific and unspecific models, a number of model types expressing different levels of biological realism are analysed. For the study of thalamic encoding, two models containing either a single simplified burst-generating current or multiple currents are used. For models simulating three burst dynamic classes, three further models of different biological complexity are used. The bursts generated by models and real neurons were analysed by assessing the input they encode using methods such as information theory, and reverse correlation. Modelled bursts were also analysed for their resilience to simulated neural noise. In all cases, inputs evoking bursts and tonic spikes were distinct. The structure of burst-evoking input depended on burst dynamic class rather than the biological complexity of models. Different n-spike bursts encoded different inputs that, if read by downstream cells, could discriminate complex input structure. In the thalamus, this n-spike burst code explains informative responses that were not due to tonic spikes. In-vivo hippocampal neurons and a pyramidal cell model both use the n-spike code to mark different LFP features. This n-spike burst may therefore be a general feature of bursting relevant to both model and in-vivo neurons. Bursts can also encode input corrupted by neural noise, often outperforming the encoding of single spikes. Both burst timing and internal structure are informative even when driven by strongly noise-corrupted input. Also, bursts induce input-dependent spike correlations that remain informative despite strong added noise. As a result, bursts endow their constituent spikes with extra information that would be lost if tonic spikes were considered the only informative responses.

Das Ziel von computational neuroscience ist, neuronale Transformationen zu beschreiben und deren Mechanismen und Funktionen zu beleuchten. Diese Doktorarbeit kombiniert Experiment, Datenanalyse und Modelle um neuronale Kodierung anhand des auditorischen Systems von Feldheuschrecke und Grille zu erforschen. Der erste Teil befasst sich mit der neuronalen Repräsentation von Balzsignalen in Feldheuschrecken. In Rezeptoren ist die Kodierung dieser Signale homogen - alle Neuronen bilden den Reiz gleich ab. In nachgeschalteten Zellen wird die Kodierung spärlicher, sowohl auf Ebene der Zeit als auch der Zellpopulation. Es entsteht ein labeled line code, bei dem unterschiedliche Nervenzellen unterschiedliche Merkmale des Stimulus abbilden. Dieser Transformation liegt eine nichtlineare Kombination von mehreren Stimulusmerkmalen zu Grunde. Die erhöhte Spezifizität von Neuronen dritter Ordnung ermöglicht eine einfache Art der Musterklassifikation, bei der die Zeitpunkte bestimmter Reizelemente innerhalb des Signals ignoriert werden können. Die beschriebene Reiztransformation repräsentiert einen Mechanismus für die Erkennung zeitlich redundanter Kommunikationssignale, wie sie von vielen Insekten produziert werden. Im zweiten Teil wird gezeigt, dass die spektrale und zeitliche Abstimmung von Neuronen zweiter Ordnung bei Grillen von der Komplexität des Reizes abhängt. Während die Abstimmung für Reize mit nur einer Trägerfrequenz breit ist, führen Reize mit mehreren Trägerfrequenzen zu einer Schärfung. Hierdurch kann Information über einzelne Komponenten eines komplexen Signals in der Kodierung erhalten werden. Ein statisches Netzwerkmodell zeigt, dass diese adaptive Abstimmung mit Mechanismen erzeugt werden kann, die in Nervensystemen vieler Organismen vorkommen. Wie diese Doktorabeit zeigt, vereinen Insekten einfach aufgebaute und gut zugängliche Nervensysteme mit komplexen Reiztransformationen. Dies macht sie zu produktiven Modellorganismen für die Neurowissenschaften. / The goal of computational neuroscience is to describe the stimulus transformations performed by neural systems and to elucidate their mechanisms and functions. This thesis combines experiment, data analysis and theoretical modeling to explore neural coding in the small auditory systems of grasshoppers and crickets. The first part deals with the transformation of the neural representation of courtship signals in grasshoppers. The code in auditory receptors is relatively homogeneous. That is, all neurons represent a very similar stimulus feature. Representation in higher-order neurons leads to an increase of temporal and population sparseness. This creates a labeled-line population code where different neurons represent different and specific stimulus features. Sparseness in the system increases through a nonlinear combination of two stimulus features. This transformation enables a simple mode of pattern classification, which ignores the timing of individual features and relies only on their average values during a signal. The transformation can therefore facilitate the recognition of the long, temporally redundant communication signals produced by grasshoppers and other insects. The second part shows that spectral and temporal tuning of second-order neurons in crickets strongly depends on the complexity of the stimulus. While tuning is relatively broad for single-carrier stimuli, signals containing multiple carrier frequencies lead to a sharpening of the tuning. This sharpening preserves information about individual components of a complex stimulus. A network model revealed that such adaptive tuning can be implemented in a static network with mechanisms that are ubiquitous in many neural systems. In summary, this study shows that the nervous systems of insects combine a relatively simple structure with complex stimulus transformations. This renders them empirically accessible and suitable model systems for computational neuroscience.

Background Spinal pain is one of humanity’s most frequent complaints with high costs for the individual and society, and is commonly related to spinal disorders. There are many origins behind these disorders e.g., trauma, disc hernia or of other organic origins. However, for many of the disorders, the origin is not known. Thus, more knowledge is needed about how pain affects the neck and neural function in pain affected regions. The purpose of this dissertation was to improve the medical examination of patients suffering from chronic whiplash-associated disorders or other pain related neck-disorders. Methods A new assessment tool for objective movement analysis was developed. In addition, basic aspects of proprioceptive information transmission, which can be of relevance for muscular tension and pain, are investigated by studying the coding of populations of different types of sensory afferents by using a new spike sorting method. Both experiments in animal models and humans were studied to accomplish the goals of this dissertation. Four cats where were studied in acute animal experiments. Mixed ensembles of afferents were recorded from L7-S1 dorsal root filaments when mechanical stimulating the innervated muscle. A real-time spike sorting method was developed to sort units in a multi-unit recording. The quantification of population coding was performed using a method based on principal component analysis. In the human studies, 3D neck movement data were collected from 59 subjects with whiplash-associated disorders (WAD) and 56 control subjects. Neck movement patterns were identified by processing movement data into parameters describing the rotation of the head for each subject. Classification of neck movement patterns was performed using a neural network using processed collected data as input. Finally, the effect of marker position error on the estimated rotation of the head was evaluated by computer simulations. Results Animal experiments showed that mixed ensembles of different types of afferents discriminated better between different muscle stimuli than ensembles of single types of these afferents. All kinds of ensembles showed an increase in discriminative ability with increased ensemble size. It is hypothesized that the main reason for the greater discriminative ability might be the variation in sensitivity tuning among the individual afferents of the mixed ensemble will be larger than that for ensembles of only one type of afferent. In the human studies, the neural networks had a predictivity of 0.89, a sensitivity of 0.90 and a specificity of 0.88 when discriminating between control and WAD subjects. Also, a systematic error along the radial axis of the rigid body added to a single marker had no affect on the estimated rotation of the head. Conclusion The developed spike sorting method, using neural networks, was suitable for sorting a multiunit recording into single units when performing neurophysiological experiments. Also, it was shown that neck movement analysis combined with a neural network could build the basis of a decision support system for classifying suspected WAD or other pain related neck-disorders.

This thesis studies a neural network inspired by human neocortex. An extension of the recurrent and binary network proposed by Gripon and Berrou is given to store sparse messages. In this new version of the neural network, information is borne by graphical codewords (cliques) that use a fraction of the network available resources. These codewords can have different sizes that carry variable length information. We have examined this concept and computed the capacity limits on erasure correction as a function of error rate. These limits are compared with simulation results that are obtained from different experiment setups. We have finally studied the network under the formalism of information theory and established a connection between compressed sensing and the proposed network.