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Clinical impact of soluble Neuropilin-1 in ovarian cancer patients and its association with its circulating ligands of the HGF/c-MET axisKlotz, Daniel Martin, Kuhlmann, Jan Dominik, Link, Theresa, Goeckenjan, Maren, Hofbauer, Lorenz C., Göbel, Andy, Rachner, Tilman D., Wimberger, Pauline 06 June 2024 (has links)
Background: Neuropilin (NRP) is a transmembrane protein, which has been shown to be a pro-angiogenic mediator and implicated as a potential driver of cancer progression. NRP-1 up-regulation in ovarian cancer tissue predicts poor prognosis. However, the clinical relevance of the soluble form of NRP-1 (sNRP-1) as a circulating biomarker in ovarian cancer patients is unknown. - Methods/patients cohort: sNRP-1 levels were quantified in a cohort of 88 clinically documented ovarian cancer patients by a commercially available sNRP-1 enzyme-linked immunosorbent assay (ELISA) kit (Biomedica, Vienna, Austria). Patients (81.8% with FIGOIII/IV) received primary cytoreductive surgery with the aim of macroscopic complete resection (achieved in 55.7% of patients) and the recommendation of adjuvant chemotherapy in line with national guidelines. - Results: Higher levels of sNRP-1 reflected more advanced disease (FIGO III/IV) and indicated a trend towards suboptimal surgical outcome, i.e. any residual tumor. sNRP-1 was neither related to the patients’ age nor the BRCA1/2 mutational status. Patients with higher sNRP-1 levels at primary diagnosis had a significantly reduced progression-free survival (PFS) (HR = 0.541, 95%CI: 0.304 - 0.963; p = 0.037) and overall survival (OS) (HR = 0.459, 95%CI: 0.225 - 0.936; p = 0.032). Principal component analysis showed that sNRP-1 levels were unrelated to the circulating hepatocyte growth factor (HGF) and the soluble ectodomain of its receptor the tyrosine kinase mesenchymal–epithelial transition (c-MET), suggesting that there is no proportional serological concentration gradient of soluble components of the NRP-1/HGF/c-MET signaling axis. - Conclusions: In line with the previously shown tissue-based prognostic role, we demonstrated for the first time that sNRP-1 can also act as a readily accessible, prognostic biomarker in the circulation of patients with ovarian cancer at primary diagnosis. Given its known role in angiogenesis and conferring resistance to the poly ADP-ribose polymerase (PARP) inhibitor olaparib in vitro, our results encourage more detailed investigation into sNRP-1 as a potential predictive biomarker for bevacizumab and/or PARP-inhibitor treatment.
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Characterizing the interaction between VE-PTP, Tie2 and VE-CadherinMuhammad, Sharif Ossai 27 July 2012 (has links)
Many signaling pathways have been shown to be involved in the formation of the vascular system. Among them are the endothelial specific receptor families such as VEGF, Ang/Tie, as well as other signaling pathways such as semaphorins, which are also involved, in axonal guidance. It is known that the interaction between receptor tyrosine kinase, Tie2, VE-Cadherin, and VE-PTP mediate endothelial cell quiescence and adhesion. However, the structural basis of these interactions is not well understood. The aim of our study is to characterize the binding interactions between these players. Another important part of our study is describing the cross-talk between vasculature and nervous system by characterizing the Neuropilin/Plexin/Semaphorin system. VE-Cadherin along with neuropilins plays an essential role by directing VEGF signals to the appropriate location and coordinating the activation of downstream molecules. We characterize the interaction between Tie2, VE-PTP and VE-Cadherin by (FRET)-based proximity assay, fluorescence lifetime imaging, and co-immunoprecipitation assays. Our data showed a consistent localization of the protein and FRET signal for Tie2 and VE-PTP prior to ligand recognition. We showed the association between Tie2 and VE-Cadherin complex by co-immunoprecipatation. However, our FRET data was not consistent. The examination of VE-PTP and VE-Cadherin for association and localization of the protein showed a very unique, mutually exclusive localization of the protein. Our study of Neuropilin/Plexin/Semaphorin system showed changes in the protein localization, FRET signal and morphology upon stimulation of HEK293 cells expressing Nrp/plexin with Sema3D. In this system VE-Cadherin along with neuropilins plays an essential role by directing VEGF signals to the appropriate location and coordinating the activation of downstream molecules. The characterization of extracellular binding between Tie2, VE-PTP, and VE-Cadherin, will help to better understand the molecular mechanisms of normal and tumor angiogenesis to develop new anti-angiogeneic therapies.
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Semaphorin 3F as a novel therapeutic option in the fight against pancreatic cancerNiclou, Benoit 24 July 2018 (has links)
INTRODUCTION: Pancreatic Ductal Adenocarcinoma (PDAC) is an aggressive form of cancer with a high mortality rate, primarily due to lack of effective treatment options. Current therapeutic approaches are limited to surgical resection of the pancreas during early stages of the disease and to the use of non-specific chemotherapeutic drugs such as gemcitabine, neither of which has successfully improved the 5-year survival rate of PDAC. Both the lack of effective treatments and the high mortality of the disease call for the urgent need to develop new therapeutic options.
OBJECTIVES: This thesis project focuses on an endogenous inhibitor of the neuropilin 2 receptor (NRP2) called semaphorin 3F (SEMA3F) and its use as a potential new drug in the fight against pancreatic cancer. By binding the transmembrane receptor neuropilin 2 (NRP2), SEMA3F can inhibit angiogenesis and cellular proliferation. Interestingly, given its role as a guidance molecule, it is also a potent mediator of cellular repulsion. All three of these effects will be analyzed in the context of this study.
METHODS: Syngeneic pancreatic cancer cells were injected orthotopically in two separate groups of mice. One group involved the use of transgenic Nrp2-/- mice, and served as a way to analyze the absence of the receptor on the vasculature and how that affects the growth of the primary tumor and the formation of metastases in the liver. The other group received intravenous injections of SEMA3F-expressing and control adenovirus, and served to explore the effect of SEMA3F as a potential therapy against the growth of the primary tumor in the pancreas and distant metastases in the liver.
RESULTS: We observed a decrease in pancreatic tumor and metastatic growth in the absence of Nrp2 in our transgenic mouse model compared to the WT control. Mice injected with SEMA3F-expressing adenovirus also showed a decrease in primary tumor growth as well as a reduction in the formation of metastases in the liver compared to the control.
CONCLUSION: Nrp2 mediates angiogenesis in pancreatic cancer, which facilitates the growth of the primary tumor as well as the formation of metastases. Our results indicate that the anti-angiogenic, anti-proliferative and repulsive actions of SEMA3F could be used to develop an effective treatment option for PDACpancreatic ductal adenocarcinoma. / 2020-07-24T00:00:00Z
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Rôle de la spastin dans le developpement des circuits moteurs et leur dégénérescence dans les paraplégies spastiques héréditaires / Spastin implication in the development of motor circuits and their degeneration in hereditary spastic paraplegiasJardin, Nicolas 30 September 2016 (has links)
Les mutations du gène SPG4 codant la spastin sont responsables de la forme la plus fréquente de Paraplégies Spastiques Héréditaires (PSH), des maladies neurologiques caractérisées par une dégénérescence des faisceaux cortico-spinaux. La spastin, ainsi que son homologue p60-katanin sont des enzymes de cassure des microtubules (MSE) essentielles à la croissance des neurones moteurs spinaux (NMS) chez l'embryon de poisson-zèbre mais dont le rôle dans les processus de guidage axonal également dépendant des microtubules (MTs) demeurent énigmatiques. Les principaux objectifs de ma thèse ont consisté à préciser le rôle et le degré de redondance fonctionnelle existant entre ces deux MSE lors de l'établissement des circuits moteurs chez ce téléoste et de clarifier les mécanismes pathogéniques à l¿origine des PSH liées au gène SPG4.J'ai tout d'abord contribué à montrer que la p60-Katanin contrôle la trajectoire des axones des NMS et la mobilité des larves de façon dose-dépendante et non redondante avec la spastin. De plus, notre étude identifie la polyglutamylation des MTs par TTLL6 comme un élément clé de l'activité de la p60-Katanin lors de ce processus. Sur le même modèle, j'ai révélé un rôle différentiel des isoformes majoritaires de la spastin (résultant d¿une traduction alternative, M1 et M61) au cours du développement des NMS en démontrant un rôle coopératif de M1 et d'autres protéines de PSH dans l'inhibition de la voie des BMPs et révélant un rôle pour M61 en aval de la signalisation Neuropilin-1. Ces données suggèrent que l'altération de ces deux grandes voies de signalisation essentielles au développement des NMS pourrait contribuer à la pathogénèse des formes SPG4. / Mutations in SPG4, encoding spastin cause the major form of Hereditary Spastic Paraplegias (HSP), a paralytic disorder characterised by the degeneration of the corticospinal tracts. Spastin and its close homologue p60-katanin are microtubule-severing enzymes (MSE) required for spinal motor neuron (SMN) axon extension during zebrafish development. However, their roles in SMN axon navigation which also rely on microtubules (MTs) remain elusive. My PhD work aimed at refining the functional specificity and redundancy of these MSE during motor circuit wiring and clarifying the physiopathology of SPG4-linked HSP. I have first contributed to show that p60-Katanin controls SMN axon targeting and larval locomotion in a dose-dependent manner. We also demonstrated that Spastin and p60-Katanin play differential roles in SMN navigation and identified TTLL6-mediated MT polyglutamylation as a key event in regulating p60-Katanin activity in this process. Concomitantly, I have conducted a functional analysis of spastin main isoforms (resulting from alternative translation, M1 and M61) during zebrafish development, which reveals their critical and specific involvement in two distinct signalling pathways that are both essential for motor circuit wiring and locomotor behaviours. This study has provided compelling evidences for a concerted role for M1 and other HSP proteins in the down-regulation of the BMP pathway and reveals a specific role for M87 as a downstream effector of Neuropilin-1 signalling. Altogether, our study emphasizes defective BMP signalling as a key pathogenic mechanism in HSP, and shows that dysregulation of the Neuropilin-1 pathway may equally contribute to SPG4-linked HSP.
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Growth Factor Dependent Co-receptor Function of Neuropilins in Breast CarcinomaMohammed, Nada Shah 23 August 2011 (has links)
Neuropilin (Nrp) overexpression is correlated with increased invasion and metastasis in many epithelial carcinomas including breast cancer. The exact molecular mechanism of how Nrp promotes cancer cell tumourigenicity is unknown. Nrp is a coreceptor for VEGF, hepatocyte growth factor (HGF), and also shown to activate TGF-beta on tumour cells. We hypothesize that binding of Nrp potentiates growth factor (GF) signalling and results in GF-dependent aggressive phenotype in breast cancer. In the current study, Nrp was shown to potentiate HGF signalling in vitro in MCF-7 cells by increasing phosphorylation of the MET receptor. However MDA-MB-231 cell line failed to show any differences after Nrp knockdown, due to constitutively activated MET. Nrp is also shown to increase the number and size of cancer stem cell (CSC) enriched mammospheres through NF-kB pathway activation. These results suggest a novel function of Nrp in CSCs and identify it as a potential target for effective cancer therapy.
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Growth Factor Dependent Co-receptor Function of Neuropilins in Breast CarcinomaMohammed, Nada Shah 23 August 2011 (has links)
Neuropilin (Nrp) overexpression is correlated with increased invasion and metastasis in many epithelial carcinomas including breast cancer. The exact molecular mechanism of how Nrp promotes cancer cell tumourigenicity is unknown. Nrp is a coreceptor for VEGF, hepatocyte growth factor (HGF), and also shown to activate TGF-beta on tumour cells. We hypothesize that binding of Nrp potentiates growth factor (GF) signalling and results in GF-dependent aggressive phenotype in breast cancer. In the current study, Nrp was shown to potentiate HGF signalling in vitro in MCF-7 cells by increasing phosphorylation of the MET receptor. However MDA-MB-231 cell line failed to show any differences after Nrp knockdown, due to constitutively activated MET. Nrp is also shown to increase the number and size of cancer stem cell (CSC) enriched mammospheres through NF-kB pathway activation. These results suggest a novel function of Nrp in CSCs and identify it as a potential target for effective cancer therapy.
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Dlx homeobox genes and their role in interneuronal differentiation and migration in the developing forebrain.Le, Trung Ngoc 12 April 2010 (has links)
Understanding the specificity of homeobox genes has been hampered by the lack of verified direct transcriptional targets. The Dlx family of homeobox genes is expressed in the ganglionic eminences of the developing forebrain. Dlx1/Dlx2 double knockout (DKO) mice die at birth. Phenotypic analyses demonstrate abnormal development of the basal telencephalon, including defects in neuronal differentiation in the basal ganglia, reduced expression of GABA in the basal telencephalon, and loss of migration of GABAergic inhibitory interneurons to the neocortex. The mechanisms underlying DLX protein regulation of differentiation and migration of GABAergic interneurons are poorly defined.
We have successfully applied chromatin immunoprecipitation to identify potential direct transcriptional targets of DLX homeoproteins from embryonic tissues in vivo. Reporter gene assays demonstrated the transcriptional significance of the binding of DLX proteins to different downstream regulatory elements, which were confirmed in vitro by electrophoretic mobility shift assay and site-directed mutagenesis. The functional significance of DLX mediated transcriptional regulation of these targets was further elaborated through several series of loss-of-function assays including gene expression in Dlx1/2 knockout embryonic forebrain tissues, as well as siRNA or Lentiviral mediated shRNA knockdown experiments with primary forebrain cultures. Quantitative analysis of the regulatory effect of Dlx genes on various forebrain markers of differentiation and migration was performed using in situ hybridization, high-performance liquid chromatography coupled with cell counting. Neuronal migration was assessed by forebrain explants and diI labelling of migratory cells from ganglionic eminence to neocortex.
We have demonstrated that DLX1 and DLX2 can transcriptionally activate (Gad1, Gad2) or repress (Nrp2) different downstream targets. In the Dlx1/2 DKO, reduction of GABA expression and failure of GABAergic interneurons to migrate to the neocortex is partly due to loss or aberrant expression of these DLX downstream targets. In the triple Dlx1/2; Nrp2KO, partial restoration of tangential migration of GABAergic interneurons from basal ganglia to the neocortex was successfully established signifying the importance of DLX regulation of Semaphorin-Neuropilin signalling during forebrain development.
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Dlx homeobox genes and their role in interneuronal differentiation and migration in the developing forebrain.Le, Trung Ngoc 12 April 2010 (has links)
Understanding the specificity of homeobox genes has been hampered by the lack of verified direct transcriptional targets. The Dlx family of homeobox genes is expressed in the ganglionic eminences of the developing forebrain. Dlx1/Dlx2 double knockout (DKO) mice die at birth. Phenotypic analyses demonstrate abnormal development of the basal telencephalon, including defects in neuronal differentiation in the basal ganglia, reduced expression of GABA in the basal telencephalon, and loss of migration of GABAergic inhibitory interneurons to the neocortex. The mechanisms underlying DLX protein regulation of differentiation and migration of GABAergic interneurons are poorly defined.
We have successfully applied chromatin immunoprecipitation to identify potential direct transcriptional targets of DLX homeoproteins from embryonic tissues in vivo. Reporter gene assays demonstrated the transcriptional significance of the binding of DLX proteins to different downstream regulatory elements, which were confirmed in vitro by electrophoretic mobility shift assay and site-directed mutagenesis. The functional significance of DLX mediated transcriptional regulation of these targets was further elaborated through several series of loss-of-function assays including gene expression in Dlx1/2 knockout embryonic forebrain tissues, as well as siRNA or Lentiviral mediated shRNA knockdown experiments with primary forebrain cultures. Quantitative analysis of the regulatory effect of Dlx genes on various forebrain markers of differentiation and migration was performed using in situ hybridization, high-performance liquid chromatography coupled with cell counting. Neuronal migration was assessed by forebrain explants and diI labelling of migratory cells from ganglionic eminence to neocortex.
We have demonstrated that DLX1 and DLX2 can transcriptionally activate (Gad1, Gad2) or repress (Nrp2) different downstream targets. In the Dlx1/2 DKO, reduction of GABA expression and failure of GABAergic interneurons to migrate to the neocortex is partly due to loss or aberrant expression of these DLX downstream targets. In the triple Dlx1/2; Nrp2KO, partial restoration of tangential migration of GABAergic interneurons from basal ganglia to the neocortex was successfully established signifying the importance of DLX regulation of Semaphorin-Neuropilin signalling during forebrain development.
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Définition de molécules théranostiques bifonctionnelles pour le traitement du cancer / Definition of bifunctional theranostic molecules for cancer treatmentJia, Tao 23 September 2016 (has links)
L’angiogenèse tumorale réfère à la capacité d’une tumeur à stimuler la formation de nouveaux vaisseaux sanguins. L’induction de l’angiogenèse dépend notamment de la présence de certains récepteurs exprimés à la surface de cellules endothéliales et tumorales. Ces récepteurs sont impliqués dans la formation de nouveaux vaisseaux sanguins mais aussi dans la progression des tumeurs, l’invasion locale des tissus avoisinants et la formation de métastases. Nous nous intéressons ici essentiellement aux récepteurs de type intégrines (et surtout l’intégrine αvß3) ou neuropiline-1 (NRP1).Les intégrines sont des récepteurs transmembranaires décrits initialement parce qu’ils permettent aux cellules d’adhérer et de se déplacer sur la matrice extracellulaire (ECM) en particulier parce qu’elles se lient à la séquence tri-peptidique RGD, mais elles interviennent aussi directement et indirectement dans les échanges biochimiques entre les cellules et leur micro-environnement. NRP1 est un corécepteur du VEGF (vascular endothelial growth factor). Pour cela, NRP1 s’associe au récepteur principal VEGFR2, surexprimé dans les tumeurs et dont l’expression a été corrélée avec l’angiogenèse. Il est très important de noter que l’intégrine αvß3 et le récepteur NRP1 peuvent interagir physiquement et fonctionnellement. Notre hypothèse de travail est alors qu’en bloquant la fonction de ces 2 récepteurs nous pourrons augmenter l’efficacité des thérapies anti-angiogèniques anti-tumorales.Nous avons généré des nanoparticules de silices bifonctionnelles car elles présentent à leur surface à la fois des peptides cycliques cRGD ciblant l’intégrine αvß3 et ATWLPPR qui cible NRP1. Nous avons testé des ratio différents de peptides cRGD et ATWLPPR (100/0, 25/75, 50,75/50/25 et 0/100), et nous avons aussi optimisé le nombre total de ces ligands/NP. Nous avons analysé l’affinité des différentes molécules, leur sélectivité et activité biologique ainsi que leurs propriétés anti-angiogéniques et anti-tumorale en particulier sur des cellules endothéliales humaines (ECs) et sur des lignées de cellules tumorales.Notre étude suggère que ces nanoparticules bifonctionnelles présentent un grand potentiel si leur composition est soigneusement définie. En particulier, elles peuvent présenter des activités extrêmement variables voir opposées suivant la nature et composition de leur surface et de la concentration à laquelle les NPs sont utilisées. En effet, à « haute concentration » en NP, ce qui correspond en fait à une faible concentration en peptides, nous montrons qu’il est possible d’obtenir un effet « pro-angiogénique » lié au recrutement d’autres récepteurs de facteurs de croissance (IGF1-R/IR) qui a priori ne devaient pas intervenir dans notre système, mais semblent pouvoir être fonctionnellement liés aux intégrines et/ou NRP1 en réponse aux particules présentant les 2 peptides cRGD et ATWLPPR. Ces résultats contribuent à expliquer certains échecs thérapeutiques des agents anti-angiogéniques mais nous permettent aussi de proposer des solutions attractives pour la définitions nouveaux agents thérapeutiques. / Tumor angiogenesis refers to the ability of a tumor to stimulate new blood vessels formation. Angiogenesis strongly depends on cell surface receptors and integrin activation to promote tumor progression, local invasion and dissemination. Integrins (especially integrin αvß3) and Neuropilin-1 (NRP1), a co-receptor of VEGFR2, are over-expressed in the tumor vasculature and by tumor cells, and their expression has been correlated with tumor progression. Importantly, integrin αvß3 and NRP1 can physically and functionally interact.The use of dual targeted drugs that block the integrin αvß3 and the NRP1 receptor simultaneously is thus expected to augment the anti-angiogenic and anti-tumor activities, as compared to each “mono-therapy” separately. During my PhD studies, in collaboration with the group of chemists leaded by Pr G. Subra, we generated different batches of bifunctional cRGD/ATWLPPR peptides coated nanoparticles (NPs) targeting integrin αvß3 and NRP1 simultaneously. We introduced different ratio of cRGD and ATWLPPR peptides (100/0, 25/75, 50/50, 75/25 and 0/100), and we also increased the amount of total ligands on the surface of the silica NPs. Systematic studies including molecules' affinity, selectivity, and biological activity as well as anti-angiogenic and anti-tumoral effects were performed on primary endothelial cells (ECs), immortalized ECs and several tumor cells. NPs properties were also evaluated in vivo in a mouse tumor model. We report here that these NPs present highly variable biological activities in ECs and tumor cells depending on the peptides ratio, surface coating of the NPs and on their concentration. In particular, “elevated” concentrations of NPs, which actually correspond to usual concentrations of peptides, can activate an unexpected IGF1-R/IR-AKT signaling pathway that could lead to a counter-productive pro-angiogenic activity (agonist instead of antagonist). This could mimic the conflicting results obtained in clinical trials using Cilengitide, an RGD-presenting peptide, and thus provide new areas of investigations and new possibilities to design active nano-drugs.This work can thus participate to the general effort of our research community to design efficient targeted anti-angiogenic therapies that could be applied in particular for cancer treatment.
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Modélisation d'inhibiteurs de protéines impliquées dans l'angiogenèse / Molecular modelling of inhibitors of proteins involved in angiogenesisGoldwaser, Elodie 29 November 2013 (has links)
L’angiogenèse étant un processus limité dans des conditions physiologiques et un processus clé dans la croissance tumorale, elle est devenue une cible thérapeutique prometteuse. La neuropiline-1 (Np1) est un corécepteur du VEGF, qui est le facteur pro-angiogénique le mieux décrit jusqu’à présent. Dans cette thèse, nous nous intéressons à la modélisation du ligand 47, une molécule active expérimentalement, en vue de l’amarrer dans la neuropiline-1. En raison de sa flexibilité conformationnelle, ce ligand pourrait en effet adopter une conformation étendue, comme la tuftsine, un ligand naturel de Np1, ou une conformation repliée. Une étape préliminaire essentielle, avant l'exploration de la complexation du lig-47 a Np1, est l'étude de sa flexibilité conformationnelle. Il est en effet impératif de s'assurer que les interactions intra-moleculaires (conformationnelles) dans le lig-47 sont calculées a une precision comparable a celles de ses interactions intermoléculaires avec Np1. Un écueil important tient au caractère conjugue du lig-47. Les quatre fragments constitutifs de cette molecule sont tous aromatiques ou conjugues, et sont tous connectes par des atomes insaturés. [...] Nous avons, dans une première étape, construit la molécule en quatre fragments : le benzimidazole, le méthylbenzène, le benzodioxane et le carboxythiourée (CTU). Nous avons approché ces quatre fragments par une molécule d’eau afin de calibrer les rayons de Van de Waals effectifs impliqués dans les contributions d’énergies électrostatique et de répulsion. L’anisotropie ayant été assurée, nous avons cherché à reproduire la conjugaison, par la calibration des barrières de torsion V0 primaires (n=1) et binaires (n=2). Nous obtenons des accords très satisfaisants entre les courbes conformationnelles obtenues avec SIBFA et celles obtenues par des calculs de chimie quantique (QC). Nous avons ensuite effectué des minimisations de l'énergie SIBFA en partant des minima des six courbes conformationnelles. Afin d'évaluer la transférabilité de la méthode, nous avons comparé les stabilités relatives de ces minima par des calculs QC ponctuels. Or les différences d'énergie séparant le minimum « global » des minima locaux se sont avérées sous-estimées par rapport aux calculs QC. Ces résultats nous ont amenés à envisager des façons différentes de représenter le fragment CTU. La possibilité la plus évidente consiste à le séparer en deux sous-fragments amide et thioamide. Les effets de la conjugaison et de la transférabilite des multipôles et polarisabilités sont ainsi perdus mais pourraient être compensés par la prise en compte explicite de l’énergie de polarisation des fragments amide et thioamide. Avec cette approche, la recalibration des rayons effectifs a permis de préserver des accords convenables avec les calculs quantiques pour l'approche des atomes du CTU par une molécule d'eau sonde. Les courbes conformationnelles reproduisent de près les courbes QC avec une recalibration minimale. Les minima de ces courbes ont été a nouveau minimisés en SIBFA, conduisant a des structures néanmoins très proches des minima correspondants de l'approche précédente avec un CTU construit d'un seul tenant. Mais à présent, les différences d'énergie séparant le minimum global des minima locaux sont très voisine de celles trouvées en QC. De plus, l'évolution des courbes conformationnelles en fonction de la structure considérée s'est avérée régie par l'énergie de polarisation. Par ailleurs, nous avons obtenu des résultats satisfaisants lors de l’amarrage de la tuftsine dans Np1. Ces résultats s'avèrent suffisamment probants pour permettre d'envisager à présent une étude détaillée des modes d'interaction du lig-47 avec Np-1. / Angiogenesis is a limited process in physiological conditions and a key process in tumor growth. Hence, it has become a promising therapeutic target. The neuropilin-1 (Np1) is a co-receptor for VEGF, which is today the best known pro-angiogenic factor. This manuscript deals with the molecular modelling of the ligand 47 (lig47), an experimentally active molecule, in order to dock it into Np1. Due to its conformational flexibility, this ligand could adopt and extended conformation such as tuftsin, a natural ligand, does in its complex with Np1, or a folded conformation. An essential preliminary step, before the exploration of the complexation of lig47 with Np1 is the study of its conformational flexibility. Indeed it must be ensured that the intramolecular (conformational) interactions are calculated with precision compared with the calculations of the interaction energies with Np1. An important issue comes from the polyconjugaison of the lig47. [...] We probed these four fragments with a water molecule in order to calibrate the effective Van der Waals radii implicated in electrostatic and repulsion contributions. Once the anisotropy was reproduced, we looked for reproducing the effect of the conjugaison on torsional barriers. We hence calibrated primary (n=1) and binary (n=2) barriers. We obtained very satisfactory agreements between the conformational curves obtained with SIBFA and those obtained with quantum chemistry (QC) calculations. Then we performed energy minimizations of SIBFA energy of the minima of the ix conformational curves. In order to evaluate the transferability of the method, we compared the relative stabilities of these minima with single-point QC calculations. But the differences of energy between the global minimum and local minima were underestimated in comparison with QC calculations. These results lead us to consider different ways of representing CTU. The more evident way consists in separating it in two fragments amide and thioamide. The effects of the conjugaison and the transferability of the multipoles and the polarisabilities are lost but could be compensated by the explicit consideration of the polarization energy between the amide and thioamide fragments. With this approach, the recalibration of the effective radii permitted to preserve good agreements with the QC calculations when probing the CTU by a water molecule. The conformational curves reproduce the QC curves after a minimal recalibration. The minima of these curves were then re-minimized with SIBFA, leading to structures close to those obtained with the first representation. But now, the differences of energy between the global minimum and the local minima are very close to those obtained in QC. Moreover, the evolution of the conformational curves as function of the number of the structure is ruled by the polarization energy. Otherwise, we obtained satisfactory results when we docked the tuftsin in Np1. These results will allow us to consider a detailed study of the interaction between lig47 et Np1.
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