The complete genomic sequence of Rhizobium leguminosarum ATCC 14479 has been determined. Its genome size is 7,935,223 base-pairs of DNA (bp). This multipartite genome contains 5 distinct replicons: a chromosome of 4,883,137 bp and four mega-plasmids of size 1,234,209 bp, 415,988 bp, 771,583 bp, and 630,306 bp. In silico (literally: on computer) analysis was done on the complete genome to detect genes relating to iron metabolism by bacteria. Seven iron-related operons and genes were found: nodulation genes, the Tol operon, the hmuPSTUV operon, iron response regulator genes, the cycHJKL operon, genes for bacterial cyclic glucans, and vicibactin genes.

No description available.

No description available.

Thèse numérisée par la Direction des bibliothèques de l'Université de Montréal.

Entre os PRRs (receptores de reconhecimento padrão), NOD-like receptors (NLRs), tal como NOD2, são responsáveis pela detecção intracelular de muramil dipeptídeo (MDP); padrão molecular associado a patógeno (PAMP), encontrado no peptidoglicano (PGN) de praticamente todas bactérias GRAM positiva e negativa. Após o reconhecimento e estimulação por MDP, NOD2 recruta diretamente a serina-treonina quinase RIPK2, uma proteína adaptadora importante na ativação de NF?B mediada por NOD2. A expressão de NOD2 foi descrita em macrófagos e em outras células. Além disso, trabalhos anteriores indicaram que PRRs desempenham papel crucial na ativação de células gliais da medula espinal, na indução e manutenção da dor inflamatória crônica e dor neuropática. No presente estudo, avaliamos o papel de NOD2 na modulação da sensibilidade à dor, focando sua importância na ativação de células da glia da medula espinal, bem como a sua via de sinalização (RIPK2) e liberação de citocinas pró-nociceptivas, como o fator de necrose tumoral alfa (TNF-?), interleucina-6 (IL-6) e interleucina-1 beta (IL-1?). Os resultados demonstram que camundongos selvagens tratados com MDP, apresentaram diminuição no limiar nociceptivo mecânico (pico entre 3 e 5 horas) comparado com o grupo controle (veículo), retornando ao basal após 48 horas. Além disso, camundongos NOD2-/- , RIPK2-/- , TNFR1/2-/- e IL-6 -/- tratados com MDP não diferiram o limiar nociceptivo mecânico, comparado com seus respectivos grupos controle (veículo). Entretanto, camundongos TNFR1- /- , CCR2-/- , TLR4-/- , MyD88-/- e TRIF-/- tratados com MDP, apresentaram diminuição no limiar nociceptivo mecânico similar aos camundongos selvagens tratados com MDP. Adicionalmente, o pré-tratamento de camundongos selvagens com IL-1ra, propentofilina, minociclina, fluorocitrato e SB 203580 inibiu o desenvolvimento da hipersensibilidade mecânica induzida por MDP. Estes dados sugerem que a ativação do sensor intracellular NOD2 esta presente em células da glia da medula espinal e estimula a ativação das vias de sinalização RIPK2 e p38 MAPK com subsequente produção de IL-1?, IL-6 e TNF?, por uma via de sinalização independente de TLR4, MyD88 e TRIF. Finalmente, estes mecanismos contribuem para o processo de hipersensibilidade mecânica durante a neuropatia periférica e representam uma nova abordagem para elucidar os mecanismos envolvidos na fisiopatologia da dor crônica. / Among PRRs (pattern recognition receptors), NOD-like receptors (NLRs), such as NOD2 are responsible by intracellular detection of muramyl dipeptide (MDP); pathogen-associated molecular pattern (PAMP) found in the peptidoglycan (PGN) from virtually all gram positive and gram negative bacteria. Upon recognition and stimulation by MDP, NOD2 recruits directly the receptor-interacting serine/threonine-protein kinase 2 (RIPK2), an adaptor protein important in the NOD2-mediated NF?B activation. The expression of NOD2 has been described in macrophages and other cells. Moreover, previous work has indicated that PRRs play a crucial role in the activation of spinal cord glial cells, in the induction and maintenance of chronic inflammatory and neuropathic pain. In the present study, we aimed to evaluate the role of NOD2 in the modulation of pain sensitivity, focusing on its importance in the activation of spinal cord glial cells, as well as its signaling pathway (RIPK2) and release of pro-nociceptive cytokines, such as tumour necrosis factor-alpha (TNF-?), interleukin-6 (IL-6) and interleukin-1beta (IL-1?). The results demonstrate that WT mice treated with MDP showed a decrease in mechanical nociceptive threshold (peak 3 to 5 hours) compared with the control group (vehicle), returning to the base line after 48 hours. Furthermore, NOD2-/- , RIPK2-/- , TNFR1/2-/- and IL-6 -/- mice treated with MDP did not differ the mechanical nociceptive threshold compared with their respective control groups (vehicle). However, TNFR1-/- , CCR2-/- , TLR4-/- , MyD88-/- and TRIF-/- mice treated MDP, showed a decrease in mechanical nociceptive threshold similar to WT mice treated with MDP. In addition, the pretreatment of WT mice with IL-1ra, propentofylline, minocycline, fluorocitrate and SB 203580 inhibited the development of mechanical hypersensitivity induced by MDP. These data suggest that activation of the intracellular sensor NOD2 present in spinal cord glial cells stimulates the activation of RIPK2 and p38 MAPK signaling pathways and subsequent production of IL-1?, IL-6 and TNF?, in a TLR4-, MyD88- and TRIF-independent signaling pathway. Finally, these mechanisms contribute to the process of mechanical hypersensitivity during peripheral neuropathy and represent a novel approach for elucidating the mechanisms underlying pathophysiology of chronic pain.

Toll-like Rezeptoren (TLR) und Nod-like Rezeptoren (NLR) sind Muster-erkennende Rezeptoren des angeborenen Immunsystems, die bakterielle Zellwandbestandteile erkennen können. Interleukin (IL)-1beta ist ein streng reguliertes Zytokin. Durch eine erste Stimulation wird der TLR-Rezeptor ausgelöst und führt zur Expression des Vorläuferproteins proIL-1beta. Durch einen zweiten Stimulus wird ein zytoplasmatischer NLR-Rezeptor zur Caspase1-Aktivierung angeregt. Dies führt zur post-translationalen Reifung von proIL-1beta zu reifem IL-1beta und zur Aktivierung weiterer Mechanismen der Pathogen-Eliminierung während einer bakteriellen Meningitis. Im ersten Teil dieser Arbeit wurde die synergistische Beziehung zwischen TLRs und NOD2 in Bezug auf die IL-1beta-Sekretion in Astrozyten und Mikroglia untersucht. Primäre murine WT-Astrozyten und eine humane Zelllinie, die mit Lipopolysaccharid (LPS) oder Lipopeptid sowie Muramyldipeptid (MDP) stimuliert wurden, zeigten signfikant erhöhte IL-1beta-Werte. IL-1beta war in NOD2-/- Astrozyten nicht erhöht. NOD2 trägt demnach als MDP-ausgelöster Rezeptor in Astrozyten, vermutlich zusammen mit dem Inflammasom-Komplex, zur Caspase-1-Aktivierung bei. In Mikrogliazellen lässt sich der bei Astrozyten gezeigte Effekt nicht reproduzieren. Zum ersten Mal wurde gezeigt, dass die TLR-abhängige IL-1beta-Antwort durch NOD2-Beteiligung in murinen und humanen Astrozyten synergistisch erhöht wird. In einem weiteren Versuchsteil wurde in primären murinen Peritonealmakrophagen von adulten Mäusen der TLR/NLR-Synergismus untersucht. Es stellte sich überraschenderweise heraus, dass weibliche NOD2-/- Mäuse zu einer synergistisch erhöhten IL-1beta-Sekretion fähig waren. SiRNA-Versuche mit in Östrogen vorinkubierten RAW264.7-NOD2-/- Zellen zeigten eine eindeutige Synergie der TLR4- und NOD2-Rezeptoren in der IL-1beta-Ausschüttung. Östrogen scheint weiblichen Individuen einen protektiven Vorteil vor Infektionen bei NOD2-Defizienz zu verschaffen. / Toll-like receptors (TLR) and nod-like receptors (NLR) are pattern-recognition receptors that recognize lipopolysaccharide (LPS), lipopeptides and myramyldipeptide (MDP) derived from bacterial cell wall. We focus our question on the regulation of the pro-inflammatory cytokine interleukin (IL)-1beta during bacterial meningitis in primary murine astrocytes and microglia as well as cell lines and the synergism of TLR4 or TLR2 and NOD2 to amplify IL-1beta-expression. ProIL-1beta is expressed by TLR-stimulation and activation of NF-kB signal transduction. Through the activation of Caspase-1, possibly through NOD2 and the inflammasome, proIL-1beta is cleaved on post-translational level and obtains its activated status, leading to pathogen elimination during bacterial meningitis. Primary murine WT-astrocytes and a human cell line primed with LPS or lipopeptide and stimulated with MDP show significantly increased IL-1beta levels in the supernatant. NOD2-/- astrocytes do not show elevated IL-1beta levels. After screening of cytoplasmic proCaspase-1 and activated Caspase-1 by Western blot it became clear, that stimulation of NOD2 with MDP led to Caspase-1 activation and thus to IL-1beta maturation in primary murine WT-astrocytes. We demonstrate for the first time that the synergism between TLR4 and NOD2 leads to significantly elevated IL-1beta levels and that NOD2 is capable of activating caspase-1 in primary murine astrocytes. Another part of the work was to test the TLR/NLR-synergism on primary peritoneal macrophages from adult mice. Surprisingly, female NOD2-/- mice showed significantly elevated IL-1beta levels. SiRNA- and stimulation-experiments with RAW264.7-NOD2-/- cells pre-incubated in estrogen show a clear synergy in IL-1beta secretion through TLR4 and NOD2 receptors. Estrogen seems to protect females from infection when having a NOD2 deficiency.

Entre os PRRs (receptores de reconhecimento padrão), NOD-like receptors (NLRs), tal como NOD2, são responsáveis pela detecção intracelular de muramil dipeptídeo (MDP); padrão molecular associado a patógeno (PAMP), encontrado no peptidoglicano (PGN) de praticamente todas bactérias GRAM positiva e negativa. Após o reconhecimento e estimulação por MDP, NOD2 recruta diretamente a serina-treonina quinase RIPK2, uma proteína adaptadora importante na ativação de NF?B mediada por NOD2. A expressão de NOD2 foi descrita em macrófagos e em outras células. Além disso, trabalhos anteriores indicaram que PRRs desempenham papel crucial na ativação de células gliais da medula espinal, na indução e manutenção da dor inflamatória crônica e dor neuropática. No presente estudo, avaliamos o papel de NOD2 na modulação da sensibilidade à dor, focando sua importância na ativação de células da glia da medula espinal, bem como a sua via de sinalização (RIPK2) e liberação de citocinas pró-nociceptivas, como o fator de necrose tumoral alfa (TNF-?), interleucina-6 (IL-6) e interleucina-1 beta (IL-1?). Os resultados demonstram que camundongos selvagens tratados com MDP, apresentaram diminuição no limiar nociceptivo mecânico (pico entre 3 e 5 horas) comparado com o grupo controle (veículo), retornando ao basal após 48 horas. Além disso, camundongos NOD2-/- , RIPK2-/- , TNFR1/2-/- e IL-6 -/- tratados com MDP não diferiram o limiar nociceptivo mecânico, comparado com seus respectivos grupos controle (veículo). Entretanto, camundongos TNFR1- /- , CCR2-/- , TLR4-/- , MyD88-/- e TRIF-/- tratados com MDP, apresentaram diminuição no limiar nociceptivo mecânico similar aos camundongos selvagens tratados com MDP. Adicionalmente, o pré-tratamento de camundongos selvagens com IL-1ra, propentofilina, minociclina, fluorocitrato e SB 203580 inibiu o desenvolvimento da hipersensibilidade mecânica induzida por MDP. Estes dados sugerem que a ativação do sensor intracellular NOD2 esta presente em células da glia da medula espinal e estimula a ativação das vias de sinalização RIPK2 e p38 MAPK com subsequente produção de IL-1?, IL-6 e TNF?, por uma via de sinalização independente de TLR4, MyD88 e TRIF. Finalmente, estes mecanismos contribuem para o processo de hipersensibilidade mecânica durante a neuropatia periférica e representam uma nova abordagem para elucidar os mecanismos envolvidos na fisiopatologia da dor crônica. / Among PRRs (pattern recognition receptors), NOD-like receptors (NLRs), such as NOD2 are responsible by intracellular detection of muramyl dipeptide (MDP); pathogen-associated molecular pattern (PAMP) found in the peptidoglycan (PGN) from virtually all gram positive and gram negative bacteria. Upon recognition and stimulation by MDP, NOD2 recruits directly the receptor-interacting serine/threonine-protein kinase 2 (RIPK2), an adaptor protein important in the NOD2-mediated NF?B activation. The expression of NOD2 has been described in macrophages and other cells. Moreover, previous work has indicated that PRRs play a crucial role in the activation of spinal cord glial cells, in the induction and maintenance of chronic inflammatory and neuropathic pain. In the present study, we aimed to evaluate the role of NOD2 in the modulation of pain sensitivity, focusing on its importance in the activation of spinal cord glial cells, as well as its signaling pathway (RIPK2) and release of pro-nociceptive cytokines, such as tumour necrosis factor-alpha (TNF-?), interleukin-6 (IL-6) and interleukin-1beta (IL-1?). The results demonstrate that WT mice treated with MDP showed a decrease in mechanical nociceptive threshold (peak 3 to 5 hours) compared with the control group (vehicle), returning to the base line after 48 hours. Furthermore, NOD2-/- , RIPK2-/- , TNFR1/2-/- and IL-6 -/- mice treated with MDP did not differ the mechanical nociceptive threshold compared with their respective control groups (vehicle). However, TNFR1-/- , CCR2-/- , TLR4-/- , MyD88-/- and TRIF-/- mice treated MDP, showed a decrease in mechanical nociceptive threshold similar to WT mice treated with MDP. In addition, the pretreatment of WT mice with IL-1ra, propentofylline, minocycline, fluorocitrate and SB 203580 inhibited the development of mechanical hypersensitivity induced by MDP. These data suggest that activation of the intracellular sensor NOD2 present in spinal cord glial cells stimulates the activation of RIPK2 and p38 MAPK signaling pathways and subsequent production of IL-1?, IL-6 and TNF?, in a TLR4-, MyD88- and TRIF-independent signaling pathway. Finally, these mechanisms contribute to the process of mechanical hypersensitivity during peripheral neuropathy and represent a novel approach for elucidating the mechanisms underlying pathophysiology of chronic pain.

Orientador: Ricardo de Lima Zollner / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Ciencias Medicas / Made available in DSpace on 2018-08-11T22:15:47Z (GMT). No. of bitstreams: 1 Domingos_PriscilaPerez_D.pdf: 2379926 bytes, checksum: df7f068098f3454b58caf0a13e61f196 (MD5) Previous issue date: 2008 / Resumo: O camundongo não obeso diabético (NOD) é caracterizado por desenvolver naturalmente diabetes mellitus tipo 1 (DM-1) com similaridade ao diabetes mellitus tipo 1 em humanos. A manifestação espontânea do diabetes neste modelo animal é caracterizado por infiltração progressiva das ilhotas de Langerhans por células mononucleares linfócitos T (CD4+ e CD8+) e destruição das células ß pancreáticas produtoras de insulina. O fator de crescimento neural (NGF) e algumas citocinas estão associados a regeneração neural, além de atuarem sobre células do sistema imune. Em adição a estes efeitos, NGF age na liberação de insulina pelas células betas das ilhotas pancreáticas, tornando-se foco de interesse com relação as suas propriedades moduladoras no processo inflamatório na ilhota pancreática. O gangliosídeo GM1 liga-se ao receptor de alta afinidade (TrkA) do NGF-ß, mimetizando seus efeitos. No presente trabalho, avaliamos a ação modulatória de GM1 e NGF em cultura de ilhotas pancreáticas, provenientes de camundongos NOD. Foram avaliados por meio de RT-PCR a expressão gênica de NGF-ß, TrkA e insulina e, por ensaio imunoenzimático, a concentração de citocinas IL-1ß, IL-12, TNF-a, INF-y e insulina. Nossos resultados sugerem ação moduladora similar entre GM1 e NGF sobre as ilhotas de NOD não diabéticos e pré-diabéticos. NGF e GM1 aumentam a expressão gênica de NGF e TrkA e diminuem a expressão gênica de insulina em NOD não diabéticos e pré-diabéticos. Além disso, aumentam a liberação de insulina e diminui a de citocinas inflamatórias IL-1ß, IL-12, TNF-a, IFN-y que caracterizam a resposta Th1. / Abstract: The non-obese diabetic mice (NOD) lineage is characterized by developing type 1 diabetes mellitus (DM-1) naturally, bearing a similarity to DM-1 in human beings. The spontaneous manifestation of diabetes is characterized by gradual infiltration in pancreatic islets by mononuclear cells lymphocytes T (CD4+ and CD8+) and destruction of the ß-cells producers of insulin. One consequence of this effect, is the release of neurotrophins trying modulate the insulin release by the ß cells of pancreatic islets. Thus, the neurotrophins have been the focus of interest in the modulation of the inflammatory process in the pancreatic islets. The ganglioside GM1 binds to the high affinity receptor (TrkA) of the NGF-ß, enhancing its effect. In the present work, we evaluate the immune modulation properties of GM1 and NGF in culture of pancreatic islets from NOD mice. The gene expression of NGF-ß, TrkA and insulin for immune enzymatic assay, the concentration of cytokines IL 1ß, IL-12, TNF-a, IFN-y and insulin were evaluated by RT-PCR and ELISA. Our results suggest similar modulation action between GM1 and NGF on islets of NOD non-diabetic and pre-diabetic. GM1 and NGF action increases the gene expression of NGF and TrkA and the decrease of insulin in mice NOD non-diabetic and pre-diabetic. Moreover, GM1 and NGF increase the insulin release and decrease inflammatory cytokines that characterize the Th1 reply. / Doutorado / Ciencias Basicas / Doutor em Clínica Médica

Type 1 diabetes (T1D) is an autoimmune disease, whose incidence is rising every year, and its prevention or a cure does not exist. T1D is influenced by multiple genetic factors but environmental factors represent the major contributor to the recent almost epidemic increase of T1D incidence worldwide, primarily in developed countries. Amongst these factors belong for example enteroviral infections, microbiota dysbiosis or gluten-free diet (GFD). GFD has been proven to have a protective effect in NOD mice, which is a spontaneous model of T1D, and a beneficial effect on glycemic control in humans, when administered after T1D onset. This diploma thesis examined changes of regulatory and potentially regulatory T-cells and their cytokines in peripheral blood mononuclear cells (PBMC) of T1D children, who underwent 12-month intervention trial of GFD. Secondly, the thesis assessed if the influence of GFD on immune regulatory functions can be transferred by colonization of germ-free NOD mice with gut microbiota of these children. We have found that intervention with GFD increases percentage of Tr1 cells and IL-10 producing CD4+ T-cells in PBMC of T1D children. Furthermore, the beneficial effect on immune regulation can be at least partially transferred to NOD mice by the colonization with human microbiota...

Le diabète de type 1 (DT1) est une maladie auto-immune caractérisée par la destruction des cellules β pancréatiques par les cellules immunitaires, ce qui entraîne une insuffisance en insuline. L’étude des souris Non-Obese Diabetic (NOD), qui développent spontanément le diabète auto-immun, a permis l'identification de plusieurs loci de susceptibilité associés au diabète, appelés Idds. D’ailleurs, Idd1 est lié au locus du CMH. L’utilisation de souris congéniques NOD.B6-Idd1 et B6.NOD-Idd1 a démontré qu’Idd1 est nécessaire mais insuffisant pour la progression du diabète auto-immun. Précédemment, nous avons démontré que les allèles de résistance au locus Idd2 offrent une protection significative contre l’apparition du diabète auto-immun, semblable à Idd1. Pour identifier les facteurs génétiques minimaux requis pour l'apparition du DT1, nous avons introduit les loci NOD Idd1 et Idd2 chez des souris B6, générant des souris doubles congéniques B6.Idd1.Idd2. Bien que la combinaison de Idd1 et Idd2 n’est pas suffisante pour induire l’apparition du diabète, nous avons observé une infiltration immunitaire dans le pancréas exocrine des souches congéniques B6 Idd2. De plus, nous avons observé d'importantes différences phénotypiques dans les sous-populations de lymphocytes T chez les souris B6.Idd1.Idd2 par rapport aux souris simple congéniques, suggérant une interaction épistatique entre Idd1 et Idd2 dans la modulation des fonctions des lymphocytes T. De plus, des augmentations de neutrophiles et de la fibrose spécifiques à Idd2 ont été découvertes, suggérant qu’Idd2 est impliqué dans le processus cellulaire inflammatoire du diabète auto-immun. Dans l’ensemble, ces données montrent que la combinaison des allèles de susceptibilité Idd1 et Idd2 ne mène pas à la progression du diabète auto-immun. Des facteurs génétiques ou environnementaux supplémentaires sont donc nécessaires pour provoquer le diabète auto-immun chez la souris. Néanmoins, nous constatons que les allèles NOD au niveau des locus Idd2 coopèrent pour induire une inflammation et une infiltration immunitaire dans le pancréas. / Type 1 diabetes (T1D) is an autoimmune disease characterized by the destruction of pancreatic β cells by immune cells, leading to an insulin deficiency. Non-Obese Diabetic (NOD) mice, which spontaneously develop autoimmune diabetes, have enabled the identification of several loci associated with diabetes susceptibility, termed Idds. Notably, Idd1 is linked to the MHC locus and resistance alleles at this locus provide full protection from diabetes onset. Conversely, C57BL/6 (B6) mice bearing NOD Idd1 alleles exhibit immune infiltration in the pancreas without causing overt diabetes. These results show that NOD Idd1 alleles are necessary but not sufficient for autoimmune diabetes progression. In a previous study, we demonstrated that diabetes resistance alleles at the Idd2 locus provide significant protection from autoimmune diabetes onset, second to Idd1. To identify the minimal genetic factors required for T1D onset, we introduced the NOD Idd1 and Idd2 loci in B6 mice, generating B6.Idd1.Idd2 double congenic mice. Although the introduction of susceptibility alleles at both Idd1 and Idd2 was not sufficient to induce diabetes onset, we observed immune infiltration in the exocrine pancreas of B6 Idd2 congenic strains. In addition, we observed important phenotypic differences in T cell subsets in B6.Idd1.Idd2 mice relative to single congenic mice, suggesting epistatic interaction between Idd1 and Idd2 in modulating T cell functions. Moreover, Idd2-specific increases in neutrophils and fibrosis were discovered, suggesting that Idd2 is involved in the inflammatory cellular process of autoimmune diabetes. Altogether, these data show that susceptibility alleles at Idd1 and Idd2 together are not sufficient to autoimmune diabetes progression. Additional genetic factors or environmental triggers are therefore required to cause autoimmune diabetes in mice. Still, we find that NOD alleles at the Idd2 loci cooperate to induce inflammation and immune infiltration in the pancreas.