<p>Much of current interest in aviation biofuels centers on trying to curb emissions of carbon dioxide and other greenhouse gases (GHGs) [1]. The problem is that the alternative aviation fuels which have been developed so far are not economically viable without policy supports and are underwhelming in regards to their environmental sustainability. The objective of this research is to identify biofuel pathways that perform better economically and environmentally than those which have been developed thus far. This paper will pursue this objective by examining the economic performance of a CH pathway fed by field pennycress under a number of possible scenarios.</p> <p>We conduct a stochastic discounted cash flow techno-economic analysis (TEA) of a plant designed to use catalytic hydrothermolysis (CH) technology to produce renewable diesel fuel, renewable jet fuel, and renewable naphtha from pennycress seed oil on a “greenfield” site under sixteen different scenarios defined by plant location, stage of commercialization, choice of fuel product slate, and policy environment. We combine process parameters such as conversion efficiencies, heat and water requirements, and capital costs for our model plant with stochastic projections of key input and output prices in order to model the distribution of possible financial outcomes for the plant over a twenty-year productive life. Our work follows McGarvey and Tyner (2018) in many respects, but uses updated process parameters from Applied Research Associates, Inc. (ARA), connects with economic analyses of the potential pennycress oil supply chain, and includes novel approaches to modeling key policies (US Renewable Fuel Standard, California Low Carbon Fuel Standard, and US Biodiesel Blender Tax Credit) and price series (US No. 2 diesel fuel, soybean oil, and dried distiller’s grains with solubles) [2]. Our output metrics include distributions of Net Present Values (NPVs), Probabilities of Loss (POLs), and distributions of Breakeven Prices (BEPs) for key inputs and outputs.</p> <p>Our results show that aviation biofuels production at a greenfield CH plant fed by pennycress seed oil is not economic under current market and policy conditions. Our breakeven metrics for a renewable jet fuel policy incentive, crude oil prices, and the input cost of pennycress oil indicate this could change if one of the following were to occur: </p> <p>· A crude oil price increase of at least 31-52%</p> <p>· A jet fuel price increase of at least 11-26%</p> <p>· A pennycress oil price discount of 2-6% from soybean oil prices</p> <p>· Some combination of the above</p> <p>These findings are heavily influenced by current policy design.</p>

En la presente tesis doctoral se han desarrollado dispositivos electroquímicos de estado sólido para la detección selectiva de hidrocarburos en los gases de escape de coches. Diversos materiales fueron empleados para ello. También se llevó a cabo la activación catalítica del electrodo de trabajo para mejorar la reacción electroquímica del analito objetivo. El etileno fue seleccionado como el analito objetivo para cuantificar la cantidad total de hidrocarburos ya que es uno de los hidrocarburos más abundantes en un gas de escape. Pero el dispositivo no solo debe proporcionar una respuesta selectiva al etileno, sino que también debe tener una baja sensibilidad cruzada a otros compuestos también abundantes en un gas de escape como monóxido de carbono, agua, dióxido de nitrógeno, etc. El dispositivo consiste en un sensor potenciométrico de estado sólido en el que óxido de zirconio estabilizado con 8% de óxido de itrio (8YSZ) es empleado como electrolito. Dos electrodos son impresos en la superficie de cada cara. Primero, diversos óxidos fueron empleados como electrodo de trabajo utilizando a su vez platino como electrodo de referencia a 550ºC. Muchos de los materiales fueron descartados por su falta de selectividad al etileno, su alta sensibilidad cruzada al monóxido de carbono o por su respuesta no estable. Finalmente, Fe0.7Cr1.3O3 mezclado con 8YSZ fue seleccionado como el material más prometedor dada su buena selectividad al etileno con baja sensibilidad cruzada al monóxido de carbono. Esta configuración fue expuesta a agua como a fenantreno y metilnaftaleno. Esto produjo un aumento de la sensibilidad cruzada del dispositivo al monóxido de carbono, motivo por el que el sensor no sea adecuado para los objetivos de esta tesis. La estrategia adoptada consistió en actuar sobre el electrodo de referencia. El Platino, empleado habitualmente en la bibliografía como electrodo de referencia, fue cambiado por un conductor mixto iónico-electrónico activo al oxigeno: La0.8Sr0.2MnO3 mezclado con 8YSZ (LSM/8YSZ). Desgraciadamente, esto provocó un aumento de la sensibilidad cruzada al monóxido de carbono. Diversas nanopartículas fueron añadidas en el electrodo de trabajo para mejorar la actividad catalítica y aumentar la reacción electroquímica al etileno. Níquel, titanio y aluminio (especialmente la combinación de los dos últimos con níquel) dieron la mejor respuesta: el sensor era selectivo al etileno con baja sensibilidad cruzada al monóxido de carbono, agua y fenantreno. El efecto del espesor del electrolito en la respuesta del sensor también fue evaluado en un rango de 0.1 a 1.2 mm. Aunque no había una gran diferencia en la respuesta, la sensibilidad cruzada al monóxido de carbono era menor en el caso del dispositivo más fino. Otras alternativas al 8YSZ como electrolito también fueron evaluadas para trabajar a menores temperaturas (400 a 550ºC): oxido de cerio dopado con gadolinio (CGO) y óxido de zirconio estabilizado con un 10% de óxido de escandio (ScSZ). El dispositivo basado en ScSZ mostró un buen comportamiento a etileno a bajas temperaturas y en condiciones secas pero la adición de agua provocaba un aumento de la sensibilidad cruzada al monóxido de carbono. Una vez infiltrado el electrodo de trabajo con níquel, ambos dispositivos mostraron un buen comportamiento a bajas temperaturas en condiciones secas para concentraciones de etileno inferiores a 100 ppm, aunque la mejor respuesta fue obtenida a 550ºC. Ambos dispositivos mostraron una respuesta selectiva al etileno con baja sensibilidad cruzada al monóxido de carbono, agua y fenantreno. Se estudió también el efecto de mezclar el electrodo de trabajo con un conductor iónico (8YSZ). Se mezcló La0.87Sr0.13CrO3 (LSC) con 8YSZ sin observarse un cambio en la respuesta comparado con el electrodo solo. Además la mejor configuración Fe0.7Cr1.3O3/8YSZ//8YSZ//LSM/8YSZ (infiltrado con níquel) fue expuesto a dioxide de nitr / The present thesis is focused on the development of solid-state electrochemical devices for the selective detection of hydrocarbons in car exhaust gases. For this purpose, several materials were tested as electrodes and electrolytes. Catalytic activation of the working electrode has also been taken into account to boost the electrochemical reaction of the target analyte. Ethylene is one of the most abundant hydrocarbons in an exhaust gas and was selected as the target analyte to quantify the total amount of hydrocarbons. Not only the device has to be selective to ethylene but it must also have a low cross-sensitivity toward other pollutants abundant in an exhaust gas such as carbon monoxide, water, other hydrocarbons, nitrogen dioxide, etc. Thus, a solid-state potentiometric sensor was selected based on 8% Ytria-stabilized Zirconia (8YSZ) as electrolyte. Two electrodes were screen-printed on top of each face. First, several metal oxides were tested as working electrode with platinum (Pt) as reference electrode at 550ºC. Most of the materials were discarded because of their lack of selectivity to ethylene, high cross-sensitivity toward carbon monoxide or problems regarding stability. Fe0.7Cr1.3O3 mixed with 8YSZ was finally selected as the most promising material because of its selective response to ethylene with relatively low cross-sensitivity toward carbon monoxide. This sensor configuration was then exposed to water and phenanthrene and methylnaphthalene. This led to an increase of the cross-sensitivity of the device toward carbon monoxide making the device not suitable for the purposes of the present thesis. The approach to improve the sensor performance was to modify the reference electrode. Platinum, usually employed in literature as reference electrode, was exchanged for a mixed ionic-electronic conductor active to oxygen: La0.8Sr0.2MnO3 mixed with 8YSZ (LSM/8YSZ). Unfortunately, this increases the device activity toward carbon monoxide increasing its cross-sensitivity. Several nanoparticles were added onto the working electrode to improve the catalytic activity and boost the electrochemical reaction of ethylene. Nickel, titanium and aluminum (the last two elements combined with nickel) provided the best performance: selectivity to ethylene with low cross-sensitivity toward carbon monoxide, water and phenanthrene. The effect of the electrolyte thickness was also checked in the range from 0.1 to 1.2 mm. Although there was not a huge difference between them, the cross-sensitivity toward carbon monoxide was slightly lower for the thinnest sensor. Other alternatives to 8YSZ electrolyte were tested at lower working temperatures (400 to 550ºC) with the same electrodes materials: gadolinium-doped cerium oxide (CGO) and 10% scandia-stabilized Zirconia (ScSZ). ScsZ-based device showed a good performance in dry conditions but the addition of water decreased its suitability. Once improved the catalytic activity of the working electrode, both devices showed a good performance at lower temperature in dry conditions for ethylene concentration above 100 ppm but the best response was achieved at 550ºC. Both devices were selective to ethylene with low cross-sensitivity toward carbon monoxide, water and phenanthrene. The effect of mixing the working electrode with an ionic conductor (8YSZ) was also tested by mixing La0.87Sr0.13CrO3 (LSC) with 8YSZ and no change in response was observed when compared to the bare electrode. Finally, the best sensor configuration Fe0.7Cr1.3O3/8YSZ//8YSZ//LSM/8YSZ (after infiltration with nickel) was exposed to nitrogen dioxide to check the cross-sensitivity. The response was still selective to ethylene even with the addition of nitrogen dioxide plus water. / En la present tesi doctoral s'han desenvolupat dispositius electroquímics d'estat sòlid per a la detecció selectiva d' hidrocarburs als gasos d'escapament dels automòbils. Diversos materials van ser empleats per a tal fi. També es va dur a terme l'activació catalítica de l'elèctrode de treball per a millorar la reacció electroquímica al anàlit objectiu. L' etilè va ser seleccionat com anàlit objectiu per a quantificar la quantitat total d' hidrocarburs, ja que és un dels hidrocarburs més abundants en un gas d'escapament. Però el dispositiu no ha de ser tan sols selectiu a l'etilè, sinó que també deu proporcionar una baixa sensibilitat creuada a altres elements força abundants en un gas d'escapament com són el monòxid de carboni, l'aigua, el diòxid de nitrogen, etc. Així, el dispositiu consisteix en un sensor potenciomètric d'estat sòlid en el que l'òxid de zirconi estabilitzat amb un 8% d'òxid d'itri (8YSZ) és empleat como a electròlit. Els elèctrodes van impresos a cadascuna de les superfícies del dispositiu. Primer, diversos òxids es van emprar com a elèctrode de treball fent servir platí com elèctrode de referència a 550ºC. Molts dels materials van ser descartats per motiu de la seva manca de selectivitat al etilè, la seva alta sensibilitat creuada al monòxid de carboni o perquè la resposta no era estable. Finalment, el Fe0.7Cr1.3O3 mesclat amb 8YSZ va ser seleccionat com el material més prometedor atès a la selectivitat a l'etilè i la baixa sensibilitat creuada al monòxid de carboni. Aquesta configuració és doncs exposada tant a l'aigua com al fenantrè i al metilnaftalè. Això va produir un increment de la sensibilitat creuada al monòxid de carboni, fent que el dispositiu no resulti idoni per als objectius de la present tesi. Es va adoptar com a estratègia modificar l'elèctrode de referència. Platí, empleat sovintment com a elèctrode de referència a la bibliografia, va ser canviat per un conductor mixt iònic-electrònic actiu a l'oxigen: La0.8Sr0.2MnO3 mesclat amb 8YSZ (LSM/8YSZ). Malauradament, això va provocar l'augment de la sensibilitat creuada al monòxid de carboni. Diverses nanopartícules van ser afegides al elèctrode de treball per tal de millorar la seva activitat catalítica i així augmentar la reacció electroquímica de l'etilè. Níquel, titani i alumini (especialment la combinació dels dos darrers amb níquel) van donar la millor resposta: el sensor era selectiu a l¿etilè amb una baixa sensibilitat creuada al monòxid de carboni, l'aigua i al fenantrè. L'efecte del espessor del electròlit a la resposta del sensor també va ser avaluada en un rang de 0.1 a 1.2 mm. Malgrat que no hi ha una gran diferència en la resposta, la sensibilitat creuada al monòxid de carboni és menor en el cas del dispositiu més prim. Altres alternatives al 8YSZ com a electròlit van ser també avaluades per tal de treballar a temperatures menors (400 a 550ºC): òxid de ceri dopat amb gadolini (CGO) i òxid de zirconi estabilitzat amb un 10% d'òxid d'escandi (ScSZ). El dispositiu basat en ScSZ va mostrar un bon comportament a l'etilè a baixes temperatures en condiciones seques, però la adició d'aigua provocava un augment de la sensibilitat creuada al monòxid de carboni. Una vegada que l'elèctrode de treball es infiltrat amb níquel, ambdós dispositius mostraren un bon comportament a baixes temperatures en condicions seques per a concentracions d'etilè menors de 100 ppm, encara que la millor resposta fou obtinguda a 550ºC. La resposta era selectiva a l'etilè amb una baixa sensibilitat creuada al monòxid de carboni, l'aigua i el fenantrè. Es va comprovar també l'efecte de mesclar l'elèctrode de treball amb un conductor iònic (8YSZ). Es va mesclar La0.87Sr0.13CrO3 (LSC) amb 8YSZ sense observa cap canví en la resposta comparada amb l'electrode sense 8YSZ. la millor configuració Fe0.7Cr1.3O3/8YSZ//8YSZ//LSM/8YSZ (infiltrado con níquel) fou exposada / Toldra Reig, F. (2018). Development of electrochemical devices for hydrocarbon sensing purposes in car exhaust gases [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/110968 / TESIS

The dry reforming of methane (DRM) has received critical attention because it converts two major greenhouse gases, methane and carbon dioxide, into molecular hydrogen and carbon monoxide, known as synthesis gas (syngas). Syngas is an important feedstock to produce various chemicals. A major drawback of the DRM process is the high deactivation rates of conventional nickel and cobalt catalysts. Experimental findings indicate that treating nickel and cobalt catalysts with boron reduces deactivation rates and enhances the catalytic activity. This study investigates the mechanism through which boron promotes catalytic stability using density functional theory calculations. First, the location of boron in nickel and cobalt catalysts is explored. Boron is found to be more stable occupying on-surface and substitutional sites in the catalysts. However, during DRM operation, carbon dioxide is able to oxidize on-surface and substitutional boron. The formed boron oxide units may react with each other and form diboron trioxide or react with hydrogen to form boric acid, and eventually leave the catalyst, which means they cannot have an effect on deactivation rates. This study argues that interstitial boron plays the major role since it is protected from getting oxidized by carbon dioxide. Geometric optimization indicates that interstitial boron leads to spontaneous surface reconstruction in both extended surfaces and nanoparticles. The effect of interstitial boron on the binding energies of methyl, hydrogen, carbon monoxide, and oxygen on extended surfaces and nanoparticles is studied and utilized using the Brønsted-Evans-Polanyi principle to give an insight about how boron reduces deactivation rates. Our analysis indicates that interstitial boron lowers the activation energies of methane and carbon dioxide. On (100) surfaces, boron lowers C–H activation energies in methane more than it lowers C=O activation energies in carbon dioxide, which means catalytic deactivation rates due to metal oxidation are lowered. On (111) surfaces, boron lowers carbon dioxide activation energies more than it lowers methane activation energies, which means catalytic deactivation rates due to coke formation are lowered. The computational study is consistent with experimental findings and gives an atomistic understanding of the beneficial role of boron on the DRM process catalyzed by nickel and cobalt.

This thesis presents specification and implementation of a system for detection of enzymes in metagenomic data. The detection is based on a provided enzyme sequence and its goal is to search the metagenomic sample for its novel variants. In order to guarantee that found enzymes truly have the desired catalytic function, the system employs a number of catalytic function verification methods. Their specification, implementation and evaluation is one of the main contributions of this thesis. Experiments have shown, that proposed methods reach sensitivity as high as 89%, specificity of 95%, values of AUC metric above 0.9 and average throughput of 1,203 verifications per second on regular personal computer. Evaluation of the system also led to discovery of a partial sequence of novel haloalkane dehalogenase enzyme in a metagenomic sample from soil. The implementation is able to work on a personal computer as well as on a grid computing environment.

We have identified a small library of novel substituted 9-aminoacridine derivatives that inhibit cell proliferation of pancreatic cancer cell lines by inducing apoptosis [Goodell, J.R. et al., 2008. J. Med. Chem. 51, 179-182.]. To further investigate their antiproliferative activities, we have assessed the antiproliferative activity of these acridine-based compounds against several pancreatic cancer cell lines. All four compounds used in this study inhibited the proliferation of pancreatic cancer cell lines in vitro. In addition, we have employed a xenograft tumor model and found that these compounds also inhibit the proliferation of pancreatic cancer in vivo. In light of the potential importance of the anticancer activity of these acridine-based compounds, we have conducted a series of biochemical assays to determine the effect of these compounds on human topoisomerase II. Unlike amsacrine, these compounds do not poison topoisomerase II. Similar to amsacrine, however, these compounds intercalate into DNA in a way that they would alter the apparent topology of the DNA substrate. Thus, inhibition of the relaxation activity of topoisomerase II by these compounds has been reexamined using a DNA strand passage assay. We have found that these compounds, indeed, inhibit the catalytic activity of topoisomerase II. Thus, these novel acridine-based compounds with anti-pancreatic cancer activity are catalytic inhibitors, not poisons, of human topoisomerase II.

Ribozymes are catalytic RNA molecules capable of performing functions normally attributed to proteins. The hairpin ribozyme is derived from the (-) strand of the satellite RNA of Tobacco Ringspot Virus, where it functions in processing rolling circle transcription intermediates. The hairpin ribozyme catalyzes the breaking of a phosphodiester bond to form a 2'-3' cyclic phosphate and a 5' OH on the product termini. RNA substrates are recognized through Watson Crick base pairs. In theory, ribozymes are able to cleave any RNA that forms the correct secondary structure. Therefore, ribozymes have been designed to recognize specific targets through base pair interactions with the substrate recognition sequence of the ribozyme. This feature of catalytic RNAs gives them endless potential as antisense reagents. While tremendous effort has gone into elucidating the kinetic mechanism of ribozymes in vitro, very few studies have addressed ribozyme function in the intracellular environment. Previous studies have had varying success. And while in some cases ribozymes have clearly reduced gene expression, the experiments were not quantitative and did not provide any information regarding the kinetic pathway of catalysis in vivo. Improved understanding of intracellular cleavage reactions requires the development of a system that can directly measure cleavage rates in vivo. Utilizing a self-cleaving ribozyme cassette inserted into the yeast PGK1 gene we have developed a system to detect ribozyme cleavage products and directly measure the cleavage rates of the hairpin ribozyme in yeast. Furthermore, we have performed controls confirming detected cleavage activity is reflective of intracellular catalysis. As ribozyme activity requires the formation of a catalytically active structure, cleavage can act as a monitor for the assembly of a functional molecule. We have used this system to address the effect of helix stability on intracellular hairpin ribozyme activity. The results of these experiments have important implications for the design of antisense ribozymes. Furthermore, catalysis by small RNAs in vivo serves as a model system for more complex RNA catalyzed reactions that are implicated in mRNA processing and translation.

Pinyon and juniper are invasive woody species which has occupied more than 47 million acres of land in Western United States. Pinyon juniper woodlands domination decreases the herbaceous vegetation, increase bare lands which in turn increases soil erosion and nutrition loss. Thus, The US Bureau of Land Management (BLM) has focused on harvesting these woody species to make room for herbaceous vegetation. The major application of harvested pinyon-juniper (PJ) is low value firewood. Thus, there is a need to develop new high value products from this woody biomass to reduce the cost of harvesting. In this study pyrolysis was carried out to investigate the feasibility of converting pinyon juniper biomass to value added products. The first part of the study was focused on biomass characterization, and effect of biomass type on product yields. The second part focuses on optimization of process parameters on product yields. The third part focuses on catalytic pyrolysis for improving the quality of bio-oil. In this study it has been shown that pinyon juniper biomass could be effectively used as biomass in fast pyrolysis and red mud, an industrial waste could be used as catalyst in catalytic pyrolysis to improve the quality of the bio-oil.

Phenol-formaldehyde adhesives are important adhesives known to have superior water resistance capacity and high mechanical strength when utilized in wood-based applications. Due to unsustainability and environmental issues associated with the use of fossil fuels, there is an urgent need to look for alternative raw materials, which are renewable in nature. Pinyon-juniper biomass has been found to be a suitable replacement for petroleum-based phenol because it is renewable, abundant, and readily available. In this thesis, bio-oil produced from the pyrolysis of pinyon-juniper biomass using red mud alumina catalyst was used to produce wood adhesives. The characterization of pinyon-juniper bio-oil showed the presence of phenolics, aromatic hydrocarbons, aliphatic hydrocarbons, carboxylic acids, ethers, ketones, aldehydes, and aliphatic alcohols. Resol synthesis parameters such as formaldehyde-to-phenol molar ratio (1.8 and 2), catalyst loading (0.25, 0.63, and 1.25 g of NaOH), reaction time (60 minutes), and reaction temperature (95°C), were investigated in the production of pinyon-juniper adhesives. Based on the results obtained, the extent of phenol substitution with pinyon-juniper bio-oil was dependent on the amount catalyst used during the synthesis process. The maximum phenol substitution of 80% was achieved using a catalyst loading of 1.25 g of NaOH while the minimum phenol substitution of 50% was obtained at a catalyst loading of 0.25 g of NaOH. Dry shear strength (8.99 to 12.73 MPa) and wet shear strength of (5.16 to 7.36 MPa) for both pure phenol-formaldehyde resols and pinyon-juniper substituted resols were comparable and exceeded the minimum requirement of 0.66 MPa for plywood. Finally, the chemical structure of pure phenol-formaldehyde resols showed the presence of more phenolic OH groups compared to pinyon-juniper substituted resols. This observation was corroborated by the higher concentration of free phenol in pure phenol-formaldehyde adhesives compared to pinyon-juniper substituted resols.

Gasification of biomass is a one of the several technologies for energy production from biomass. Biomass is a promising renewable source of energy and is in a centre of attention of energy industry not only in the Czech Republic, but also in the EU and in the world. Gasification is a thermo chemical transformation of fuel with access of understoicheiometric amount of oxidizer which produces gas of low heating value. Its main combustible components are hydrogen, carbon dioxide and methane. Produced gas may be further used in power and heating plants. Besides combustible and neutral components, gas also contains pollutants such as sulphur compounds, chlorine compounds, ash and tar. It is tar which is considered to be the underbelly of gasification as it causes, along with ash, fouling in transport tracks and terminal equipment, and blocks direct application of gas. This dissertation thesis presents design of filter for elimination of tar from the gas generated in fluid gasification equipment. This work is closely related to current research at Energy Institute at Faculty of Mechanical Engineering at Brno University of Technology. First part deals with theoretical background of this issue. Biomass properties are mentioned in relation to gasification. Types of gasification equipment are described and principle of gasification including chemical reactions is given in detail. Special part is dedicated to pollutants in the gas, especially to production of tar and its properties, which is important for consequent work. Main focus is on possibilities of catalytic cleaning of gas from tar. Principle of tar decomposition is described and types and properties of catalysts are given. Part of the thesis tackles the issue of real operations and loss of efficiency of catalyst due to sulphur compounds, sintering and carbon fouling. Based on experience and analysis in the first part of the thesis, concept of elimination of tar from gas was laid out. In addition to that, method for measurement at Biofluid 100 experimental unit was outlined and filter for testing of industrial catalysts using metal was designed. Series of experiments were further conducted in order to find out efficiency of three opted catalysts for tar decomposition. Results of these experiments are described in detail and assessed in the conclusion of this thesis which also contains outline for economic assessment of method of gas cleaning using catalysts.

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第19014号 / 工博第4056号 / 新制||工||1624(附属図書館) / 31965 / 京都大学大学院工学研究科合成・生物化学専攻 / (主査)教授 杉野目 道紀, 教授 澤本 光男, 教授 辻 康之 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM