The genus Enterococcus has an exceptional ability to acquire and transmit antibiotic resistance genes and is considered to be a major vector in their dissemination. Enterococci are part of the normal gut microbiota of humans and animals and are frequently encountered in food products including dry fermented sausage. Since fermented sausages are not heat-treated before consumption they might be a vehicle for transmitting resistance and virulence traits of enterococci by conjugation with commensal bacteria present in the human gut and pathogenic bacteria that might be present, such as Listeria species. A PCR-based assay was developed to detect enterococci in dry fermented sausage meat at the generic level by targeting a 16S rRNA sequence and a total of 29 Enterococccus strains (15 E. faecalis, 13 E. faecium, and one E. gallinarum) were identified. The susceptibility of these enterococci to antibiotics was tested and it was found that 27/29 were resistant to more than one antibiotic and possessed antibiotic resistance determinants. All strains were positive for at least one virulence gene. Strong biofilm formation occurred at lower than optimum temperature in all three species of enterococci and probably contributed to their survival in the harsh conditions experienced during dry sausage fermentation and drying. SmaI pulsed-field gel electrophoresis (PFGE) patterns exhibited genomic heterogeneity within and between the two larger groups of isolates. In spite of this heterogeneity, the phenotypic similarities observed suggested that food could still be a vehicle for distribution of antibiotic resistant bacteria among humans. In vitro conjugation experiments demonstrated transfer of the tetracycline resistant determinant, tet(M), from E. faecium S27 isolated from fermented sausage to clinical isolates of both E. faecium and E. faecalis. The streptomycin resistance of E. faecium S27 was also transferred to a clinical strain, E. faecalis 82916, which was confirmed by the presence of the streptomycin resistance gene, aadA, in the donor and transconjugant strains. E. faecium S27 also transferred tet(M) and streptomycin resistance to Listeria monocytogenes GLM-2 by in vitro mating. Evidence suggests that enterococci in fermented meats may contribute to the spread of resistance determinants. / October 2015

<p>Transmission of bacterial strains between patients is a serious problem in hospitals and with the increasing rate of antibiotic resistance the problem has farther escalated. Enterobacteriaceae produced extended-spectrum beta-lactamses (ESBLs), especially Escherichia coli (E-coli), are increasingly important nosocomial pathogens (7, 8). These bacteria are often multiple resistant and are responsible for many intestinal infections and urinary tract infections (2, 5). With the more frequent use of invasive devices in hospital care, these types of nosocomial infections have increased, particularly in seriously ill patients.</p><p>In order to diminish transmission of bacterial strains between patients and to study the epidemiology of these bacteria, it is of great importance to develop rapid and specific methods to be able to subtype on strain-level, i.e. to create a fingerprint of the isolates. The method may be based on phenotypic or genotypic characteristics of the microorganism. Any typing method must have high reproducibility and discrimination power to differentiate unrelated strains and also to demonstrate relationship of organisms deriving from the same source. In the present project, a Pulsed-Field Gel Electrophoresis (PFGE) assay for genotyping clinical E. coli isolates was used. PFGE can be used as a genotyping tool and is widely used to type bacteria and trace nosocomial infection. However, the method is time-consuming and relatively expensive in compare with other methods like PCR. In this study, a total of 93 strains were collected. The study was aimed to investigate the genotypes of the collected isolates and to identify and potential the outbreak strains.</p><p>The isolates investigated were genotypically diverse shown by a variety of PFGE banding patterns. However, clusters of closely related isolates involved in outbreaks were also identified.</p><p>In conclusion, when analyzing a large number of strains, a combination of a rapid phenotyping or genotyping method and a powerful genotyping method like PFGE would be an appropriate strategy for studying clonal relationship among isolates e.g. for detecting cross-transmission of nosocomial pathogens.</p>

Transmission of bacterial strains between patients is a serious problem in hospitals and with the increasing rate of antibiotic resistance the problem has farther escalated. Enterobacteriaceae produced extended-spectrum beta-lactamses (ESBLs), especially Escherichia coli (E-coli), are increasingly important nosocomial pathogens (7, 8). These bacteria are often multiple resistant and are responsible for many intestinal infections and urinary tract infections (2, 5). With the more frequent use of invasive devices in hospital care, these types of nosocomial infections have increased, particularly in seriously ill patients. In order to diminish transmission of bacterial strains between patients and to study the epidemiology of these bacteria, it is of great importance to develop rapid and specific methods to be able to subtype on strain-level, i.e. to create a fingerprint of the isolates. The method may be based on phenotypic or genotypic characteristics of the microorganism. Any typing method must have high reproducibility and discrimination power to differentiate unrelated strains and also to demonstrate relationship of organisms deriving from the same source. In the present project, a Pulsed-Field Gel Electrophoresis (PFGE) assay for genotyping clinical E. coli isolates was used. PFGE can be used as a genotyping tool and is widely used to type bacteria and trace nosocomial infection. However, the method is time-consuming and relatively expensive in compare with other methods like PCR. In this study, a total of 93 strains were collected. The study was aimed to investigate the genotypes of the collected isolates and to identify and potential the outbreak strains. The isolates investigated were genotypically diverse shown by a variety of PFGE banding patterns. However, clusters of closely related isolates involved in outbreaks were also identified. In conclusion, when analyzing a large number of strains, a combination of a rapid phenotyping or genotyping method and a powerful genotyping method like PFGE would be an appropriate strategy for studying clonal relationship among isolates e.g. for detecting cross-transmission of nosocomial pathogens.

Campylobacter jejuni is a commensal microorganism of the poultry gastrointestinal tract. Broilers, layers, ducks, turkeys, and quails can be colonized by Campylobacter without illness occurring. The vast majority of human Campylobacter infections are recognized as being foodborne. For 2008, preliminary FoodNet data showed that the Campylobacter incidence of infection, 12.68 per 100,000 of the U.S. population, is the second highest, only behind Salmonella at 16.20 per 100,000. To further understand Campylobacter’s role as a foodborne pathogen, analysis at the molecular level is needed. Microbial molecular typing allows for identification and differentiation of bacterial strains beneath the species level. In this study, the “gold standard” method for molecular subtyping, Pulsed Field Gel Electrophoresis (PFGE), along with Diversilab® repetitive element Polymerase Chain Reaction (rep-PCR) and 16S-23S Internal Spacer Region Denaturing Gradient Gel Electrophoresis (ISR DGGE) were used for the molecular typing of Campylobacter jejuni isolates obtained during different stages of commercial broiler production and processing. In addition, the C. jejuni isolates were tested for resistance to antimicrobials commonly used in both veterinary and human medicine. Antimicrobial resistance testing was carried out using a broth dilution system. The majority of recovered isolates came from post-harvest carcass rinsates. Carcass rinses were obtained at post-evisceration, post-chill stages. All isolates (n = 46) were identified by the Polymerase Chain Reaction as Campylobacter jejuni. Three genotypes (n = 44, n = 1, n = 1) were identified by PFGE. The 46 rep-PCR products grouped into seven clusters and two outliers. Clustering of rep-PCR products by sample source was not observed. No relatedness trends were observed for isolates recovered from the same source. The combination of PFGE and Diversilab rep-PCR methods provides highly discriminatory molecular typing results. These results provide practical epidemiological information that shows postevisceration and post-chill stages are still important targets for intervention studies. The very high occurrence of C. jejuni isolates exhibiting genotype A suggests it may differentially express certain gene(s) that enable this strain to more favorably survive under the different harsh environmental conditions encountered during production and processing. In addition, phenotypic testing revealed all of the isolates were not resistant to the antimicrobials azithromycin, ciprofloxacin, erythromycin, gentamycin, tetracycline, florfenicol, nalidixic acid, telithromycin, and clindamycin at any of the concentrations tested. All the C. jejuni isolates exhibited an indistinguishable two-band 16S-23S ISR DGGE profile. Overall, these C. jejuni commercial broiler pre- and post-harvest isolates exhibited an extremely low degree of molecular and phenotypic variability.

No description available.

No description available.

Pesquisas sobre Listeria monocytogenes em indústrias de produtos lácteos no Brasil são escassas. Três laticínios (A, B e C) produtores de queijos do Estado de São Paulo foram monitorados para a presença de L. monocytogenes no período de outubro/2008 a setembro/2009. Foram realizadas 12 coletas, correspondentes a 12 lotes de queijo produzidos, sendo quatro de cada laticínio. Em cada laticínio, as visitas foram realizadas com intervalos de aproximadamente 2 meses entre cada uma. Foram analisadas 393 amostras, sendo 201 de superfícies com e sem contato com alimentos e 192 de alimentos (leite cru e pasteurizado e queijo) água e salmoura, para pesquisa de L. monocytogenes. As análises foram realizadas de acordo com o método do Food and Drug Administration (FDA). Os resultados confirmam a presença de Listeria spp nas instalações dos três laticínios. L. monocytogenes, L. innocua, L. seeligeri e L. welshimeri foram as espécies isoladas neste estudo. Especificamente a espécie L. monocytogenes não foi encontrada no laticínio A, entretanto, o microrganismo foi isolado de 12,5% das amostras do laticínio B e de 9,1% do laticínio C. L. monocytogenes não foi isolada do leite cru dos silos, do leite pasteurizado, da água e dos queijos Minas frescal, nos 3 laticínios. Porém, no laticínio C, L. monocytogenes foi isolada de amostras de queijo Prato que foram incluídas apenas na 4ª coleta deste laticínio, além de ter sido isolada de amostras de salmoura. As maiores prevalências de contaminação por L. monocytogenes ocorreram em superfícies sem contato com alimentos, sendo positivas 51,6% das amostras do laticínio B e 21,7% do laticínio C. Em ambos os laticínios a bactéria também foi isolada de superfícies com contato com alimentos. Os resultados fornecem informações detalhadas dos pontos prioritários para o desenvolvimento de estratégias de controle de L. monocytogenes em laticínios e mostram a importância de programas de monitoramento ambiental do patógeno, mesmo em pequenas indústrias. Os 85 isolados identificados como L. monocytogenes revelaram-se de quatro sorotipos: 1/2a, 1/2b, 1/2c e 4b, com predomínio do 4b, em ambos os laticínios, o que é preocupante para a saúde pública. Com base nos resultados de PFGE (perfis combinados ApaI e AscI), 40 perfis (pulsotipos) foram obtidos. Pulsotipos foram isolados repetidamente entre coletas nos laticínios B e C, sugerindo persistência de linhagens nos laticínios. Apesar dos laticínios serem distantes e independentes, um pulsotipo foi compartilhado entre ambos. O laticínio A apresentou contaminação por mais de um pulsotipo de L. seeligeri e houve isolamento repetido de um pulsotipo dessa espécie, entre as coletas, sugerindo adaptação da bactéria e necessidade de controle do gênero Listeria nessa indústria. A ocorrência de um mesmo pulsotipo de L. monocytogenes com sorotipos diferentes (1/2b e 4b) mostra que a sorotipagem deve acompanhar análises mais refinadas como as de natureza genotípica. / Listeria monocytogenes surveys in cheese manufacturing plants in Brazil are rare. Three cheese manufacturing plants (A, B and C) in São Paulo state were monitored for the presence of Listeria monocytogenes during the period of October/2008 - September/2009. Twelve samples surveys were taken corresponding to 12 cheese lots produced, four in each plant. In each cheese plant, the samples were taken at intervals of approximately 2 months. There were 393 samples analyzed, 201 from surfaces with and without contact with food and 192 of food (raw and pasteurized milk and cheese), water and brine, with the objective of searching for L. monocytogenes. The analyses were performed in accordance with Food and Drug Administration (FDA) method. The results confirmed the presence of Listeria spp in the facilities of three plants. L. monocytogenes, L. innocua, L. seeligeri and L. weshimeri were the species isolated in this study. Specifically the L. monocytogenes specie was not isolated from plant A. However, the microorganism was isolated in 12.5% of the samples from plant B and 9.1% from plant C. Listeria monocytogenes was not isolated from raw milk in storage tanks, pasteurized milk, water or Minas frescal cheese samples from the three plants. Nevertheless, in plant C, L. monocytogenes was isolated in Prato cheese that was included only in the 4th sampling survey and also from the brine samples. The major prevalence of contamination by L. monocytogenes occurred on surfaces without contact with food, with 51.6% of the samples positive from plant B and 21.7% from plant C. In both plants, the microorganism was also isolated from food contact surfaces. The results provide detailed information about the critical points for the development of L. monocytogenes control strategies in cheese processing plants and, moreover, show the relevance of sampling programs of the pathogen, even in small cheese processing plants. The 85 isolates identified as L. monocytogenes were classified in four serotypes: 1/2a, 1/2b, 1/2c and 4b, with 4b dominating in both cheese plants, which is of concern to human health. On the basis of PFGE results (combined profiles ApaI and AscI), 40 profiles (pulsotypes) were found. Pulsotypes were isolated repeatedly among sampling surveys in plants B and C, suggesting persistence of lineages in the plants. Despite these plants being distant and independent, one pulsotype was shared between them. Plant A presented contamination by more than one pulsotype of L. seeligeri and there was a repetitive isolation of one pulsotype of this specie among samplings, suggesting adaptation of the bacterium and the need for control of the Listeria genus in this plant. The occurrence of one single pulsotype of L. monocytogenes with different serotypes (1/2b and 4b) show that serotyping should follow more refined analyses as the ones of genotypic nature.

A infecção por Actinobacillus pleuropneumoniae, doença conhecida como pleuropneumonia suína, assumiu grande importância na suinocultura moderna devido à alta ocorrência observada nos rebanhos. O impacto da doença está relacionado à capacidade do agente em causar pneumonia severa, levando os animais a óbito ou doença crônica, resultando em graves prejuízos zootécnicos. Diante desse cenário, o controle e monitoramento do agente se faz importante por meio da identificação dos diferentes sorotipos, da análise genética e da determinação dos perfis de resistência aos antimicrobianos. O objetivo do presente estudo foi caracterizar fenotípica e genotípicamente estirpes de Actinobacillus pleuropneumoniae isoladas a partir de quadros de pneumonia em suínos. Um total de 85 estipes de A. pleuropneumoniae foram submetidas a reação em cadeia pela polimerase (PCR) para identificação e sorotipagem, determinação da concentração inibitória mínima de antimicrobianos, polimorfismo do comprimento de fragmentos amplificados (AFLP) e eletroforese em gel de campo pulsado (PFGE). Os sorotipos mais frequentes foram: 5 (38,8%), 10 (29,4%), 7 (5,9%), 8 (5,9%) e 6 (3,5%), sendo que 14 (16,5%) estirpes foram não tipáveis. Foi observada alta heterogeneidade de perfil genético entre as estirpes analisadas, tanto pelo AFLP quanto pelo PFGE, e o índice discriminatório para cada técnica foi 0,97 e 0,84, respectivamente. Todas as estirpes foram sensíveis ao ceftiofur, gentamicina, tulatromicina e tilmicosina, sendo que 98,8% das estirpes foram resistentes à tilosina e altas taxas de resistência foram observadas ainda para as tetraciclinas, clindamicina e sulfadimetoxina. / Infection by Actinobacillus pleuropneumoniae, a disease known as swine pleuropneumonia, has gained greater relevance to modern pig farming due to the high recurrence rate observed in herds. The impact of the disease relates to the capacity of the agent to cause severe pneumonia, leading to animal death or chronic conditions, thus resulting in severe zootechnical losses. In view thereof, the control and monitoring of the agent is key, being performed through the identification of different serotypes, genetic analysis and determination of antimicrobial resistance profiles. The objective of this study was to characterize phenotypically and genotypically Actinobacillus pleuropneumoniae strains isolated from swine with clinical presentation of pneumonia. A total of 85 strains of A. pleuropneumoniae were subject to polymerase chain reaction (PCR) for identification and serotyping, determination of the minimal inhibitory concentration, amplified fragment length polymorphism (AFLP) and pulsed field gel electrophoresis typing techniques (PFGE). Most recurring serotypes were: 5 (38.8%), 10 (29.4%), 7 (5.9%), 8 (5.9%) and 6 (3.5%), of which 14 (16.5%) strains were nontypeable. High genetic heterogeneity was observed for both AFLP and PFGE, and the discriminatory index for each technique was 0.97 and 0.84, respectively. All 85 strains were susceptible to ceftiofur, gentamicin, tulatromicin and tilmicosin, 84 of which were resistant to tylosin, and high resistance rates were also observed for clindamycin, tetracyclines and sulfadimethoxine.

A Bordetella avium é o agente etiológico da bordetelose aviária, uma doença altamente contagiosa que afeta o trato respiratório superior das aves. B. avium adere-se preferencialmente às células do epitélio ciliado traqueal, promovendo inflamação e deformação da mucosa respiratória. As infecções do trato respiratório das aves resultam em grandes prejuízos para toda indústria avícola, desta forma, o presente estudo teve como objetivo a caracterização genotípica e de sensibilidade a antimicrobianos de isolados de B. avium provenientes de perus com histórico de aerossaculite. Dentre os 300 animais examinados, isolou-se B. avium de 13 aves e foram selecionadas 20 cepas do agente para os estudos posteriores. Através do antibiograma realizado pela técnica de disco difusão observou-se um alto número de cepas resistentes aos antimicrobianos beta lactâmicos (amoxacilina, ampicilina, penicilina e ceftiofur), assim como para lincomicina, sulfonamidas e combinação sulfonamidas/trimetoprima (cotrimoxazol) e uma grande heterogeneidade resultando em 15 perfis distintos. Os antimicrobianos com maiores níveis de sensibilidade foram o florfenicol, seguidos pelas quinolonas, doxiciclina e pelas tetraciclinas. Todas as cepas foram caracterizadas através da PFGE e do AFLP, apresentando 15 pulsotipos e 16 perfis genotípicos respectivamente. Os métodos fenotípicos e genotípicos apresentaram capacidade discriminatória semelhante e revelaram uma grande diversidade dentre os isolados analisados. / Bordetella avium is the etiologic agent of avian bordetellosis, a highly contagious disease that affects the upper respiratory tract of birds. B. avium adheres preferentially to ciliated tracheal epithelial cells, promoting inflammation and deformation of the respiratory mucosa. Infections of the respiratory tract of birds resulting in large losses for the entire poultry industry in this way, this study aimed to characterize genotypic and antimicrobial susceptibility of isolates of B. avium from turkeys with a history of Airsacculitis. Among the 300 animals examined, B. avium was isolated from 13 turkeys and 20 strains were selected for further studies. Through the antibiogram performed by disk diffusion technique was observed a high number of strains resistant to beta-lactamic antibiotics (amoxicillin, ampicillin, penicillin and ceftiofur), as well as, lincomycin, sulfonamides and sulfonamide combination/ trimethoprim (cotrimoxazole) and a high level of heterogeneity resulting in 15 different profiles. The antimicrobials with higher levels of sensitivity were florfenicol, followed by quinolones, doxycycline and tetracycline. All strains were characterized through to PFGE and AFLP, presenting 15 pulsotypes and 16 genetic profiles, respectively. Phenotypic and genotypic methods showed similar discriminatory capacity and presented a high diversity among isolates examined.

Entre os microrganismos relevantes para a segurança alimentar, bactérias do gênero Salmonella tem se destacado como causadoras de toxinfecções, sendo motivo de preocupação constante para a cadeia de produção de aves e suínos. Os objetivos deste trabalho foram estudar a ocorrência de Salmonella spp. em suínos sadios ao abate e em animais apresentando sinais clínicos de salmonelose, tipificação dos isolados através da sorotipagem, polimorfismo do comprimento de fragmentos amplificados (AFLP) e eletroforese em gel de campo pulsado (PFGE). Foram examinados 50 animais com sintomatologia sugestiva de salmonelose de 12 granjas dos Estados de São Paulo, Paraná e Rio Grande do Sul e analisadas amostras de fezes, linfonodos e suabes de carcaças de 124 animais de quatro frigoríficos do Estado de São Paulo. Dos suínos com sintomatologia clínica, 38% dos animais foram positivos para o isolamento de Salmonella spp., sendo selecionadas 45 cepas, classificadas como S.Typhimurium (29/45), S. Choleraesuis (9/45), S. Infantis (3/45) e S. enterica subsp. enterica (4/45). Dos 124 suínos sadios, 16,12% foram positivos para o agente, sendo isoladas 39 cepas que foram classificadas como S. London (11/39), S. Anatum (11/39), S. Typhimurium (8/39), S. Agona (2/39), S. Enteritidis (2/39) e S. enterica subsp. enterica (5/39). Através do AFLP, a caracterização genética dos isolados revelou índice discriminatório igual a 0,85 e gerou 12 perfis distintos. O índice discriminatório do PFGE foi 0,96 apresentando 31 padrões distintos. Ambas as técnicas possibilitaram uma boa correlação entre isolados, seus sorotipos e locais de isolamento, sugerindo grande potencial para sua aplicação na genotipagem de Salmonella spp. / Among relevant microorganisms to food security, Salmonella has been highlighted as a major cause of food borne diseases, being a constant concern for poultry and pig production chain. The goal of this study was to investigate the Salmonella spp incidence in healthy pigs at slaughter, as well as in pigs showing salmonellosis clinical signs, characterize strains by serotyping, Amplified fragment length polymorphism (AFLP) and Pulsed field gel electrophoresis (PFGE). Fifty animals, presenting salmonelosis suggestive clinical symptoms, from 12 swine herds from Sao Paulo, Parana and Rio Grande do Sul states were examined and clinical materials such as stool samples, lymph nodes and carcass swab from 124 animals from four Slaughterhouses in Sao Paulo state were analyzed. Among the pigs with clinical symptoms, 38% of the animals were positive for the Salmonella spp. isolation. Forty five strains were selected and classified as S.Typhimurium (29/45), S. Choleraesuis (9/45), S. Infantis (3/45) and S. enterica subsp. enterica (4/45). From the 124 healthy pigs studied, 16.12% were positive for the agent. Thirty nine strains were isolated and classified, by serotyping, as S. London (11/39), S. Anatum (11/39), S. Typhimurium (8/39), S. Agona (2/39), S. Enteritidis (2/39) and S. enterica subsp. enterica (5/39). Through AFLP, genetic characterization of isolates showed discriminatory index of 0.85 and generated 12 distinct profiles. The PFGE discriminatory index was 0.96, showing 31 distinct patterns. Both techniques allowed a good correlation between the isolates, its serotypes and isolation locations, suggesting great potential of its application in genotyping of Salmonella spp.