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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

Efeitos fotoinduzidos em vidros e filmes de fosfato de antimônio dopado com chumbo e fosfato de antimônio dopado com cromo / Photoinduced effects in glasses and films of lead doped antimony phosphate and chromium doped antimony phosphate

Dias, Sandra Tessutti 24 February 2010 (has links)
O presente trabalho tem como objetivo estudar propriedades ópticas e estruturais de vidros e filmes de fosfato de antimônio dopados. Os vidros foram produzidos pela fusão a 900 °C, em cadinhos de carbono vítreo, dos precursores [Sb(PO3)3]n + Sb2O3 utilizando como dopantes o PbO e Cr2O3, sendo em seguida vertidos e resfriados rapidamente em moldes de aço inox. As composições vítreas em questão são: 20% [Sb(PO3)3]n 77% Sb2O3 3%PbO, 20 %[Sb(PO3)3]n 77% Sb2O3 3%Cr2O3 e 20 %[Sb(PO3)3]n 74% Sb2O3 6%Cr2O3 (mol%). A caracterização das amostras teve início com medidas de EDX para micro - análise composicional. Em seguida para os vidros na forma de bulk foram medidos os espectros de absorção e luminescência. As medidas de luminescência foram realizadas utilizando-se o laser de Kr+ nas linhas MLUV (350 nm) e MLVI (41 5nm). Medidas de EPR foram realizadas para os vidros dopados com Cr por estes possuírem elétrons desemparelhados. Os filmes finos foram depositados em substratos de soda lime pela técnica de evaporação de feixe de elétrons. A partir do espectro de absorção, o valor do bandgap (por volta de 3 eV) foi calculado, verificando que a melhor fonte para irradiação das amostras era o laser de Kr+ em MLUV. Apenas filmes de [Sb(PO3)3]n: 3% Pb2+ apresentaram efeito fotoestrutural. Com isso um estudo variando parâmetros, como tempo de irradiação, densidade de potência e espessura dos filmes, foi realizado a fim de observar a otimização do efeito. Acompanhado das variações fotoestruturais, ocorreram variações fotocrômicas, no caso fotoclareamento, as quais se caracterizaram por um deslocamento da borda de absorção para maiores energias, observado nos espectros de absorção das áreas irradiadas. Com os resultados observados do estudo e caracterização das amostras, algumas aplicações tecnológicas foram discutidas, como no caso dos efeitos observados nos filmes que podem ser utilizados para gravação de redes de difração. / The present work is about the study of the optical and structure properties of doped antimony phosphate glasses and thin films. The glasses were produced by the melting of precursors [Sb(PO3)3]n + Sb2O3 using PbO and Cr2O3 as dopant at 900 °C in vitreous carbon crucibles, then poured and quickly cooled into steel molds. The vitreous composition are: 20% [Sb(PO3)3]n 77% Sb2O3 3%PbO, 20 %[Sb(PO3)3]n 77% Sb2O3 3%Cr2O3 e 20 %[Sb(PO3)3]n 74% Sb2O3 6%Cr2O3 (mol%). The samples characterization started with EDX measurements for compositional micro-analysis. Then for the glasses in bulks form the absorption and luminescence spectra were measured. The luminescence measurements were done using MLUV (350 nm) and MLVI (415 nm) of a Kr+ laser. EPR measurements were taken for the Cr doped glasses because they present unpaired electrons. The thin films were deposited on soda lime substrates by the electron beam evaporation technique. From absorption spectra, the bandgap value around 3 eV was evaluated, noting that the best irradiation source of the samples was using a MLUV of a Kr+ laser. Only [Sb(PO3)3]n: 3% Pb2+ films presented photostructural effects. Therefore a systematic study varying several parameters, like irradiation time, power density and film thickness was conducted to observe the effect optimization. Following the photostructural variation, occurred photocchromic effects, in this case, photobleaching effects, which were characterized by a displacement of absorption edge to lower energies, observed in the absorption spectra of the irradiated areas. With the observed results from the study and characterization of the samples, some technologies applications were discussed, like in the case of the observed films effects that can be used for recording diffraction gratings.
12

Modeling Molecular Transport and Binding Interactions in Intervertebral Disc

Travascio, Francesco 10 December 2009 (has links)
Low back pain represents a significant concern in the United States, with 70% of individuals experiencing symptoms at some point in their lifetime. Although the specific cause of low back pain remains unclear, symptoms have been strongly associated with degeneration of the intervertebral disc. Insufficient nutritional supply to the disc is believed to be a major mechanism for tissue degeneration. Understanding nutrients' transport in intervertebral disc is crucial to elucidate the mechanisms of disc degeneration, and to develop strategies for tissue repair (in vivo), and tissue engineering (in vitro). Transport in intervertebral disc is complex and involves a series of electromechanical, chemical and biological coupled events. Despite of the large amount of studies performed in the past, transport phenomena in the disc are still poorly understood. This is partly due to the limited number of available experimental techniques for investigating transport properties, and the paucity of theoretical or numerical methods for systematically predicting the mechanisms of solute transport in intervertebral disc. In this dissertation, a theoretical and experimental approach was taken in order to investigate the mechanisms of solute transport and binding interactions in intervertebral disc. New imaging techniques were developed for the experimental determination of diffusive and binding parameters in biological tissues. The techniques are based on the principle of fluorescence recovery after photobleaching, and allow the determination of the anisotropic diffusion tensor, and the rates of binding and unbinding of a solute to the extracellular matrix of a biological tissue. When applied to the characterization of transport properties of intervertebral disc, these methods allowed the establishment of a relationship between solute anisotropic and inhomogeneous diffusivity and the unique morphology of human lumbar annulus fibrosus. A mixture theory for charged hydrated soft tissues was presented as a framework for theoretical investigations on solute transport and binding interactions in cartilaginous tissues. Based on this theoretical framework and on experimental observations, a finite element model was developed to predict solute diffusive-convective-reactive transport in cartilaginous tissues. The numerical model was applied to simulate the effect of mechanical loading on solute transport and binding interactions in cartilage explants and intervertebral disc.
13

Photo-induced dark states influorescence spectroscopy – investigations & applications

Chmyrov, Andriy January 2010 (has links)
This thesis focuses on investigations of transient dark states of fluorescentmolecules using spectroscopic techniques. The main purpose is to show andconvince the reader that transient dark states are not always a nuisance, butalso represent an additional source of information. Several studies with fluorescencecorrelation spectroscopy were performed, all related to non-fluorescentstates such as triplet state or isomerized states.Photobleaching is one of the main problems in virtually all of the fluorescencetechniques. In this thesis, mechanisms that retard photobleaching arecharacterized. Several compounds, antioxidants and triplet state quenchers,which decrease photobleaching, are studied, and guidelines for achieving optimalfluorescence brightness using these compounds are presented.Triplet state quenching by several compounds was studied. Detailed investigationsof the fluorescence quencher potassium iodide demonstratedthat for some of fluorophores, except of quenching, there is fluorescence enhancementmechanism present. In agreement with the first publication inthis thesis, antioxidative properties were found to play an important role inthe fluorescence enhancement. Quenching of the triplet state is proposedas a tool for monitoring diffusion mediated reactions over a wide range offrequencies.Specially designed fluorophores combining high triplet yields with reasonablefluorescence brightness and photostability were characterized forpossible applications in novel super-resolution imaging techniques based onfluorescence photoswitching. Except of benefits for imaging techniques, photoinducedswitching to non-fluorescent states could be used for monitoringmolecular diffusion, which was also demonstrated in this thesis.Studies of the triplet state kinetics of fluorophores close to dielectric interfaceswere performed using fluorescence spectroscopy. The analysis of thetriplet state kinetic can provide information about the local microenvironmentand electrostatic interactions near dielectric interfaces. / QC 20100414
14

Arabidopsis glyoxylate reductase 1 is localized in the cytosol and not peroxisomes in plant cells

Ching, Steven LK 02 1900 (has links)
Glyoxylate reductase (GLYR) is a key enzyme in plant metabolism which catalyzes the detoxification of both photorespiratory glyoxylate and succinic semialdehdye, an intermediate of the γ-aminobutyrate (GABA) pathway. Two isoforms of GLYR exist in plants, GLYR1 and GLYR2, and while GLYR2 is known to be localized in plastids, GLYR1 has been reported to be localized in either peroxisomes or the cytosol. Here, the intracellular localization of Arabidopsis GLYR1 was reappraised by conducting microscopy-based experiments that address some novel mechanisms by which proteins can be directed to peroxisomes. For instance, the C-terminal tripeptide sequence of GLYR1, -SRE, despite its resemblance to a type 1 peroxisomal targeting signal, was not sufficient for peroxisomal targeting. Collectively, the results define the cytosol as the intracellular location of GLYR1 and provide a useful reference for future studies of proteins proposed to be localized to peroxisomes and/or the cytosol. / NSERC
15

Développement et caractérisation d’une méthode photonique pour créer des distributions spatiales de protéines

Bélisle, Jonathan M. 12 1900 (has links)
Les cellules sont capables de détecter les distributions spatiales de protéines et ainsi de migrer ou s’étendre dans la direction appropriée. Une compréhension de la réponse cellulaire aux modifications de ces distributions spatiales de protéines est essentielle pour l’avancement des connaissances dans plusieurs domaines de recherches tels que le développement, l’immunologie ou l’oncologie. Un exemple particulièrement complexe est le guidage d’axones se déroulant pendant le développement du système nerveux. Ce dernier nécessite la présence de plusieurs distributions de molécules de guidages étant attractives ou répulsives pour connecter correctement ce réseau complexe qu’est le système nerveux. Puisque plusieurs indices de guidage collaborent, il est particulièrement difficile d’identifier la contribution individuelle ou la voie de signalisation qui est déclenchée in vivo, il est donc nécessaire d’utiliser des méthodes pour reproduire ces distributions de protéines in vitro. Plusieurs méthodes existent pour produire des gradients de protéines solubles ou liées aux substrats. Quelques méthodes pour produire des gradients solubles sont déjà couramment utilisées dans plusieurs laboratoires, mais elles limitent l’étude aux distributions de protéines qui sont normalement sécrétées in vivo. Les méthodes permettant de produire des distributions liées au substrat sont particulièrement complexes, ce qui restreint leur utilisation à quelques laboratoires. Premièrement, nous présentons une méthode simple qui exploite le photoblanchiment de molécules fluorescentes pour créer des motifs de protéines liées au substrat : Laser-assisted protein adsorption by photobleaching (LAPAP). Cette méthode permet de produire des motifs de protéines complexes d’une résolution micrométrique et d’une grande portée dynamique. Une caractérisation de la technique a été faite et en tant que preuve de fonctionnalité, des axones de neurones du ganglion spinal ont été guidés sur des gradients d’un peptide provenant de la laminine. Deuxièmement, LAPAP a été amélioré de manière à pouvoir fabriquer des motifs avec plusieurs composantes grâce à l’utilisation de lasers à différentes longueurs d’onde et d’anticorps conjugués à des fluorophores correspondants à ces longueurs d’onde. De plus, pour accélérer et simplifier le processus de fabrication, nous avons développé LAPAP à illumination à champ large qui utilise un modulateur spatial de lumière, une diode électroluminescente et un microscope standard pour imprimer directement un motif de protéines. Cette méthode est particulièrement simple comparativement à la version originale de LAPAP puisqu’elle n’implique pas le contrôle de la puissance laser et de platines motorisées, mais seulement d’envoyer l’image du motif désiré au modulateur spatial. Finalement, nous avons utilisé LAPAP pour démontrer que notre technique peut être utilisée dans des analyses de haut contenu pour quantifier les changements morphologiques résultant de la croissance neuronale sur des gradients de protéines de guidage. Nous avons produit des milliers de gradients de laminin-1 ayant différentes pentes et analysé les variations au niveau du guidage de neurites provenant d’une lignée cellulaire neuronale (RGC-5). Un algorithme pour analyser les images des cellules sur les gradients a été développé pour détecter chaque cellule et quantifier la position du centroïde du soma ainsi que les angles d’initiation, final et de braquage de chaque neurite. Ces données ont démontré que les gradients de laminine influencent l’angle d’initiation des neurites des RGC-5, mais n’influencent pas leur braquage. Nous croyons que les résultats présentés dans cette thèse faciliteront l’utilisation de motifs de protéines liées au substrat dans les laboratoires des sciences de la vie, puisque LAPAP peut être effectué à l’aide d’un microscope confocal ou d’un microscope standard légèrement modifié. Cela pourrait contribuer à l’augmentation du nombre de laboratoires travaillant sur le guidage avec des gradients liés au substrat afin d’atteindre la masse critique nécessaire à des percées majeures en neuroscience. / Cells are able to sense spatial distribution of proteins and accordingly migrate or extend in the appropriate direction. Understanding cellular responses to modifications in molecular spatial distributions is essential for advances in several fields such as development, immunology and oncology. A particularly complex example is axonal guidance that occurs during the development of the nervous system, which relies on distributions of attractive and repulsive guidance molecules to correctly wire this intricate network. Since several guidance cues collaborate to development of the nervous system, it is particularly difficult to assess the individual contribution of each cue and the signaling cascade each trigger in vivo; therefore methods to reproduce those distributions individually in vitro are necessary to study in detail the effect of each guidance cue. Several methods exist to produce graded distributions of protein that are either soluble or substrate-bound. A few methods making solution gradients are already widely used in several laboratories to perform experiments with the guidance cues that are normally diffusing in vivo. However, current methods allowing the fabrication of substrate-bound gradients are quite complex, which restrict their use to a few laboratories. First, we present a straightforward method exploiting photobleaching of a fluorescently tagged molecule using a visible laser to generating substrate-bound protein patterns: Laser-assisted protein adsorption by photobleaching (LAPAP). This method allows producing complex patterns of protein with micron spatial resolution and high dynamic range. An extensive characterization of the technique was performed and as proof of functionality, axons from dorsal root ganglions cells were guided on laminin peptide gradients. Secondly, LAPAP was improved in order to produce multicomponent patterns by using lasers at different wavelengths and antibodies conjugated to fluorophores corresponding to these wavelengths. Moreover, to speed-up the fabrication process and simplify the device, we developed widefield illumination LAPAP which uses a spatial light modulator, a light emitting diode and a standard microscope to directly print patterns. This patterning method is relatively simple compared to the original LAPAP setup, since it does not involve controlling the laser power or a motorized stage, but only sends an image of the desired pattern to a spatial light modulator. Finally, we used LAPAP to show how it could be used in automated high-content screening assays to quantify the morphological changes resulting from axon growth on gradients of guidance proteins. We produced thousands of laminin-1 gradients of different slopes and analyzed the variations in neurite guidance of neuron-like cells (RGC-5). An image analysis algorithm was developed to process bright field microscopy images, detecting each cell and quantifying the soma centroid and the initiation, terminal and turning angles of the maximal neurite. This data showed that laminin gradients influence the initiation angle of neurite extension of RGC-5, but does not contribute to its turning. We believe that the results presented in this thesis will facilitate the use of substrate- bound protein patterning in typical life science laboratories, since a confocal microscope or a slightly modified standard microscope is the only specialized equipment needed to fabricate patterns by LAPAP. This could increase the number of laboratories working with substrate-bound protein patterns in order to reach the critical mass necessary for major advances in neuroscience.
16

Molecular electronic,  vibrational and rotational motion in optical and x-ray fields

Gavrilyuk, Sergey January 2009 (has links)
The subject of this theoretical  study is the role ofelectronic structure as well as of rotational and vibrational motionson interactions between molecules and electromagnetic radiation,ranging from optical to x-ray. The thesis concerns both linear and nonlinear regimes of the light-matter interaction. The first part of the thesis is devoted to propagation of opticalpulses with different time-structure through various nonlinear absorbers.First we explain the double-exponential decay of fluorescence caused by photobleaching of pyrylium  salt irradiated by a train of short (100 fs) optical pulses. The main reason for this effect is the transversal inhomogeneity of the light beam which makes the dynamics of the photobleaching differ in the core of the pulse and on its periphery. We also explore the optical power limitingof C60 fullerene irradiated by either microsecond optical pulses or a picosecond pulse trains. Enhancement of nonlinear absorption is caused by strong triplet-triplet absorption that becomes important due toelongation of the interaction time.Here we show the importance of the repetitionrate for the optical power limiting performance.The second part of the thesis addresses the interaction of optical and x-rayfields with rotational degrees of freedom of molecules. In this part the main attention is paid to the rotational heating caused by the recoil, experienced by molecules due to the ejection of photoelectrons. We have quantitatively explained two qualitatively different experiments with the N2 molecule.We predict the interference modulation of the recoil-induced shift,which is a shift of the photoelectron line caused by the rotational recoil effect, as a function of the photon energy.The developed theory also explains the rotational heating ofmolecules observed in the optical fluorescence induced by x-ray radiation.Based on this explanation, we suggest a new scheme of the optical fluorescence induced by x-rays that allows to detect the recoil effect via the recoil-inducedsplitting of the optical resonance.The last part of the thesis focuses on multi-mode nuclear dynamics of the resonant Auger scattering from the C2H2 molecule, that was the subject of a recent experimental study.Here we develop a theory that explains the observed vibrationalscattering anisotropy. We have found that three qualitatively different mechanisms are responsible for this phenomenon. The first mechanism is the interference of the direct and resonance scattering channels. The second mechanismis the interference of the resonant scattering channels through core excitedstate with the orthogonal orientation of the vibrational modes of core excitedstate. The Young's double slit like interference of the quantum pathways through the double-well potential of the bending motion of core excited state is the third mechanism of the vibrational scattering anisotropy. / QC 20100713
17

FRAP measurements of synaptic vesicle mobility in motor nerve terminals /

Gaffield, Michael A. January 2007 (has links)
Thesis (Ph.D. in Neuroscience) -- University of Colorado Denver, 2007. / Typescript. Includes bibliographical references (leaves 84-93). Free to UCD affiliates. Online version available via ProQuest Digital Dissertations;
18

Investigating TLR-4 signalling in response to protein ligands

Macleod, Charlotte Victoria January 2018 (has links)
Toll-like receptor (TLR)-4 is a pattern recognition receptor (PRR) that recognises the pathogen-associated molecular pattern (PAMP) lipopolysaccharide (LPS) produced by Gram-negative bacteria. LPS binds to Myeloid differentiation 2 (MD-2)/TLR-4 heterodimers, driving their dimerisation and inducing a conformational change of the intracellular TLR-4 toll/interleukin-1 receptor (TIR) domains. The adaptor protein Myeloid differentiation primary response gene 88 (MyD88)-adaptor-like (Mal)/TIR domain-containing adaptor protein (TIRAP) then binds to the TIR domains of TLR-4 and acts as a bridge for MyD88 which goes on to form the myddosome, a large protein complex of six to eight MyD88 molecules and four Interleukin-1 receptor- associated kinase (IRAK) 4 and four IRAK1/2 molecules. This triggers a signalling cascade which results in nuclear factor (NF)-κB transcription factor activation and production of pro-inflammatory effector molecules such as the cytokine Tumour Necrosis Factor (TNF)-α. Upon activation TLR-4 is also endocytosed where it interacts with a second set of adaptor proteins TIR-domain-containing adaptor- inducing interferon (IFN)-β (TRIF)-related adaptor molecule (TRAM) and TRIF to initiate the type I IFN response. How TLR-4 dimerisation results in the formation of the oligomeric myddosome is not fully understood, but it is possible that the stoichiometry of Mal/TIRAP may be important in the formation of this protein complex. The aim of my thesis was to determine the stoichiometry of Mal/TIRAP at the plasma membrane of immortalised bone marrow derived macrophages (iBMDMs) and whether this stoichiometry changes upon stimulation with different TLR-4 ligands. To investigate Mal/TIRAP stoichiometry I first developed a viral transduction experimental cell model to visualise fluorescently labelled Mal/TIRAP. Mal/TIRAP-/- iBMDMs were lentivirally transduced with a Mal/TIRAPHALO construct. The halotag was fluorescently labelled then the cells were stimulated with TLR-4 ligands, such as LPS, fixed at different time points, then imaged. Total internal reflection fluorescence (TIRF) microscopy was used to image the plasma membrane and photobleaching experiments performed to determine Mal/TIRAP stoichiometry. I developed a computer-based analysis pipeline to analyse the resulting photobleaching data. Under resting conditions, Mal/TIRAP is present at the plasma membrane in clusters of approximately ten Mal/TIRAP molecules per cluster. After five minutes of stimulation with 10 ng/ml LPS Mal/TIRAP redistributes into cluster sizes of approximately six, twelve and much larger. After ten and fifteen minutes stimulation with 10 ng/ml LPS the clusters return to the resting size of approximately ten Mal/TIRAP molecules per cluster with a few much larger clusters remaining present. This confirms the rapid time frame within which TLR-4 signalling occurs at the plasma membrane and is consistent with myddosome stoichiometry of six MyD88 molecules or proposed super myddosomes of twelve MyD88 molecules. The computer-based analysis pipeline developed can be used to analyse any protein of interest at the plasma membrane. Protein ligands have also been found to activate TLR-4; for example allergens, such as Fel d 1 and Der p 2, as well as endogenous damage associated molecular patterns (DAMPs), such as extracellular matrix (ECM) proteins, for example fragments of fibronectin and tenascin-C. The mechanism by which these proteins interact with TLR-4 and induce signalling is unclear. Proteins from the ECM (fragments FNIII1c, FNIII13-14, FNIII9-E and FNIII9-E-14 from fibronectin and the fibrinogen-like globe (FBG) domain of tenascin-C) were tested using a transient transfection assay in HEK293 cells and shown to activate TLR-4. In conclusion, I have developed new tools and methodology to investigate how TLR-4 signals in response to LPS and DAMPs in living cells. Whether DAMP- activated TLR-4 forms similar signalling complexes to those induced by LPS will form part of a future study.
19

Etude structurale des mécanismes de photoblanchiment des protéines fluorescentes photocommutables / Structural insight into photobleaching mechanisms of reversible photoswitchable fluorescent proteins

Duan, Chenxi 05 December 2014 (has links)
La découverte des Protéines Fluorescentes Phototransformables (PTFPs) issuesd’espèces anthozoaires a ouvert, grâce à leurs propriétés photophysiques particulières, unvaste champ d’investigation pour l'imagerie biologique de fluorescence. L'un des sousgroupesdes PTFPs est formé des protéines fluorescentes réversiblement photocommutables(RSFPs), qui peuvent être commutées réversiblement entre des états non-fluorescent etfluorescent. Le photoblanchiment est la perte définitive d’émission de fluorescence sousexcitation et est un phénomène commun à toutes les molécules fluorescentes. Lephotoblanchiment a un impact important sur la qualité des images de microscopie, notammenten imagerie de super-résolution. Les RSFPs ont tendance à perdre de leur performance àchaque cycle de commutation, un processus dénommé “photofatigue”. Notre intérêt est centrésur l'étude des mécanismes de photofatigue des RSFPs.Nous avons rapporté les structures cristallographiques d’IrisFP photoblanchie par uneforte et une basse intensité d’illumination à température ambiante ainsi que les modificationsspectroscopiques associées. Nos résultats démontrent que différentes intensités d'excitationpeuvent donner lieu à différentes voies de photoblanchiment. Sous faible intensité d'excitation,une voie de photoblanchiment dépendante de l'oxygène a été mise en évidence. Lesmodifications structurales induites par la production d'oxygène singulet à l'intérieur de lapoche du chromophore ont révélé l'oxydation de deux résidus soufrés, Met159 et Cys171,piégeant le chromophore dans un état protoné non-fluorescent. Sous haute intensitéd'excitation, une voie de photoblanchiment oxygène-indépendante totalement différente a ététrouvée. Le Glu212, strictement conservé, subit une décarboxylation associée à un importantréarrangement du réseau de liaisons hydrogènes autour du chromophore, et un changementd’hybridation sp2 vers sp3 du carbone reliant les cycles du chromophore est observé. En tantque résidu clé impliqué dans le photoblanchiment induit par faible intensité d'excitation, nousavons muté Met159 en alanine afin d'éviter une sulfoxydation. Nous avons trouvé que lemutant IrisFP-M159A démontre une photostabilité améliorée en solution, en gel PVA et dansdes cellules E. coli. / The discovery of phototransformable FPs (PTFPs) from Anthozoa species, thanks totheir photophysical properties, has opened a large field in biological fluorescence imaging.One of the PTFPs’ sub-groups consists of Reversible Photoswitchable Fluorescent Proteins(RSFPs), which can be reversibly switched between nonfluorescent and fluorescent states.Photobleaching is the permanent loss of the fluorescence-emitting capacity under excitation,which is a common phenomenon among all the fluorescent molecules. Photobleaching has alarge impact on the microscopy image quality, notably on super-resolution imaging.Photoswitchable fluorescent proteins have a tendency to lose performance within everyswitching cycle, a process referred to as “photofatigue”. Our interest of study is focused onthe photobleaching mechanisms of RSFPs.We have reported the crystallographic structure of photobleached IrisFP under highand low illumination intensity at room temperature as well as its spectroscopic modifications.We found that different illumination intensities can result in different photobleachingpathways. Under low illumination intensity, an oxygen-dependent photobleaching pathwaywas evidenced. Structural modifications induced by singlet-oxygen production within thechromophore pocket revealed the oxidation of two sulfur-containing residues, Met159 andCys171, locking the chromophore in a nonfluorescent protonated state. Under highillumination intensity, a completely different, oxygen-independent photobleaching pathwaywas found. The conserved Glu212 underwent decarboxylation concomitantly with anextensive rearrangement of the H-bond network around the chromophore, and an sp2-to-sp3hybridization change of the carbon atom bridging the chromophore cyclic moieties wasobserved. As Met159 is the key residue involved in low-intensity illumination photobleaching,we have then mutated Met159 into Alanine in order to avoid sulfoxidation. We found that theIrisFP-M159A mutant display an enhanced photostability in solution, in PVA gel and inE.coli cells.
20

Aplicação de processos oxidativos avançados na degradação de propranolol e avaliação de sua toxicidade

Fernandes, Abraão Augusto 28 August 2015 (has links)
Submitted by Maike Costa (maiksebas@gmail.com) on 2016-05-05T14:14:50Z No. of bitstreams: 1 arquivo total.pdf: 4535008 bytes, checksum: 35f2a65a445c1e8219acb5615d951d72 (MD5) / Made available in DSpace on 2016-05-05T14:14:50Z (GMT). No. of bitstreams: 1 arquivo total.pdf: 4535008 bytes, checksum: 35f2a65a445c1e8219acb5615d951d72 (MD5) Previous issue date: 2015-08-28 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / The presence of drug residues has been found in aquatic environments, such as; lakes and rivers and in most cases this type contaminant is found in sewers. This type of pharmaceutical waste may contain an antihypertensive drug class, and one of its main representatives is propranolol (PRO). As a result, this study aimed to apply the advanced oxidation processes (AOPs) as an alternative to removal of this drug in synthetic effluent (SE) and real (RE). This study employed in a photochemical reactor, homogeneous systems of type photolysis, UV/H2O2, Fenton, photo-Fenton, like that TiO2 and ZnO as methods based on heterogeneous catalysis. The parameters for optimization of these methods were evaluated with the assistance of full factorial design. The evaluation of the optimal methods was performed based on the values of the rate of degradation, chemical oxygen demand (COD) and the germination index (GI). The results of better rate degradation (98,3 and 88.6%), reduction of COD (47 and 29.4%) and germination rate (62,2 and 47.2%), were achieved employing a UVC lamp 60W in the method photo-Fenton with a H2O2 concentration of 6 mmol L-1 and a Fe2+ concentration of 0.2 mmol L-1 for the synthetic and real effluent. / ambientes aquáticos, tais como; lagos e rios, e na maioria dos casos esse tipo de contaminante é encontrado em esgotos. Este tipo de efluentes das indústrias farmacêuticas pode conter uma classe de fármaco antihipertensivos, e um de seus principais representantes é o propranolol (PRO). Em vista disso, o presente trabalho visou aplicar processos oxidativos avançados (POAs) como alternativa na remoção desse fármaco em efluente sintético (ES) e real (ER). Nesse estudo foram empregados, em um reator fotoquímico, sistemas homogêneos do tipo fotólise, UV/H2O2, Fenton, foto-Fenton, bem como TiO2 e ZnO, como semicondutores para a catálise heterogênea. Os parâmetros para otimização desses métodos foram avaliados com o auxílio de planejamentos fatoriais completos. A avaliação dos métodos otimizados foi realizada com base nos valores da taxa de degradação, DQO e índice de germinação. Os melhores resultados de taxa de degradação (98,3 e 88,6%), redução de DQO (47 e 29,4%) e índice de germinação (62,2 e 47,0%) foram alcançados com o método foto-Fenton empregando lâmpada UVC com 60W de potência, concentração de H2O2 4 mmolL-1 e concentração de Fe2+ 0,12 mmolL-1, para o efluente sintético e real.

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