Noble metal nanostructures possess unique properties including large near-field enhancement and strong light scattering and absorption due to their plasmon resonance - the collective coherent oscillation of the metal free electrons in resonance with the electromagnetic field of light. The effect of nanostructure size, shape, composition, and environment on the plasmon resonance frequency and plasmonic enhancement is well known. In this thesis, we describe the effect of inter-particle coupling in assembled plasmonic nanostructures on their radiative and non-radiative properties. When metal nanoparticles assemble, plasmon oscillations of neighboring particles couple, resulting in a shift in the plasmon resonance frequency. Our investigation of plasmon coupling in gold nanorods shows that the coupling between the plasmons is "bonding" in nature when the plasmon oscillations are polarized along the inter-particle axis, whereas an "anti-bonding" interaction results when the polarization is perpendicular. We studied the distance-dependence of plasmon coupling using electrodynamic simulations and experimental plasmon resonances of lithographically fabricated gold nanoparticle pairs with systematically varying inter-particle separations. The strength of plasmon bonding, reflected by the fractional plasmon shift, decays near-exponentially with the inter-particle separation (in units of particle size) according to a universal trend independent of the nanoparticle size, shape, metal type, or medium. From the universal scaling model, we obtain a "plasmon ruler equation" which calculates (in good agreement with the experiments of Alivisatos and Liphardt) the inter-particle separation in a gold nanosphere pair from its plasmon resonance shift, making it applicable to the determination of inter-site distances in biological systems. Universal size-scaling is valid also in the metal nanoshell structure, a nanosphere trimer, and pairs of elongated nanoparticles, thus making it a generalized fundamental model, which is useful in optimizing plasmon coupling for achieving tunable plasmon resonances, enhanced plasmonic sensitivities, and large SERS cross-sections. Ultrafast laser pump-probe studies of non-radiative electronic relaxation in coupled metal nanospheres in aggregates and in gold nanospheres conjugated to thiol SAMs are also reported. We also show that the relative contribution of scattering (radiative) to absorption (non-radiative) part of the plasmon relaxation, respectively useful in optical and photothermal applications, can be increased by increasing the nanostructure size.

With a population both increasing in number and age, comes a need for new diagnostic tools in the healthcare system, capable of diagnosing and monitoring multiple disorders in a cheap and effective way to provide personalised healthcare. Multiplex label-free biosensors have the potential to rejuvenate the current system. This thesis details the assessment of an ‘in house’ built labelfree array screening technology that has potential to be a point-of-care diagnostic for personalised medicine – the Array Reader. The performance of the Array Reader platform is considered in detail and optimised for both antibody and protein screening arrays. A Global Fit protocol is developed to extract kinetic constants for all protein-protein interactions, assuming a Langmuir adsorption binding model. Standard operating procedures are developed to provide optimised dynamic range, sensitivity, reproducibility and limit of detection of immuno-kinetic assay. A new antibody bio-stack signal amplification strategy is formed, improving the detection limit 60-fold. As a consequence, the bio-stack resulted in a novel method for determining the plasmon field penetration depth, defining the assay sensing volume at the nanoparticle surface. Antibody screening arrays were investigated with an IgG quantification assay to determine total IgG content from serum samples. It relied on the ability of protein A/G to bind antibodies via the Fc region. Specific antigens were used to measure the binding properties of the antibody Fab region. By characterising both regions, we have gained insight into the overall ability of an antibody to trigger an immune response. Protein screening assay were investigated targeting C-reactive protein (CRP), a marker of inflammation. The assays performance characteristics compared favourably with clinically used CRP assays. Finally, an antibody screening array was developed to assess the efficacy of a vaccine against Yersinia pestis in a non-human primate model. The vaccine screening array is an excellent example of the versatility of the platform and just one of many possible applications for the future.

When exposed to light, metal nanoparticles exhibit a phenomenon known as LSPR, Localized Surface Plasmon Resonance. The wavelengths at which LSPR occurs is very dependent on the refractive index of the surrounding medium. Binding of biomolecules to the surface of gold nanoparticles result in a change in the refractive index that can be detected spectrophotometrically by monitoring the LSPR peak shift. When functionalized with the corresponding ligand(s), gold nanoparticles can be utilized in biosensors to detect the presence and concentration of a predetermined analyte. However, the system must exhibit high specificity and give rise to a detectable shift for analytes in the desired concentration range to be of commercial interest. The aim of the diploma project was to investigate and optimize the biofunctionalization and performance of a fiber optics based LSPR biosensor.  Three ligand systems were investigated for detection of antibodies (IgG), insulin and avidin. Binding of the analyte to the ligand caused a shift of a few nanometers when using spherical gold nanoparticles. The shifts were significantly larger when using gold nanorods. When using the IgG and insulin ligands, only minor unspecific binding was observed. The setup thus shows great potential for use in a wide range of sensing applications.

The outbreak of pandemic influenza and its ability to spread rapidly makes it a severe threat to public health. Antiviral drugs such as oseltamivir (Roche’s Tamiflu™) and zanamivir (GlaxoSmithKline’s Relenza™) are neuraminidase (NA) inhibitors (NI), which bind more tightly to NA than its natural substrate, sialic acid. However, the virus can acquire resistance to antiviral drugs by developing single point mutations (such as H274Y) in the target protein. Thus in some cases the drugs may not be as effective as expected. The high level of inconsistency exhibited by fluorometric assays and the short half-life of the chemiluminescent assay for monitoring drug resistance lead to the need for a simple, label-free, reliable assay. To address this problem, this work focused on three main objectives: 1) to determine the binding affinities of two common anti-viral drugs (oseltamivir and zanamivir) against the influenza NA wild type and drug resistant mutants using bioinformatics software Schrodinger Suite™ 2010. 2) To develop a reliable label-free, real-time, surface plasmon resonance (SPR) assay to measure the binding affinity between influenza viral coat protein neuraminidase (wild type and mutant) and anti-viral drugs. 3) To develop an SPR inhibition assay to quantitatively compare the interactions of sialic acid, zanamivir and oseltamivir with the viral coat protein neuraminidase (wild type and mutant). The entire docking process was carried out using Schrödinger Suite™ 2010. The 2009 pandemic H1N1 neuraminidase (PDB: 3NSS) was used throughout the docking studies as the wild type structure. Five mutants (H274Y, N294S, H274N, A346N and I222V) and three ligands (sialic acid, oseltamivir and zanamivir) were built using the maestro module. The grid-based ligand docking with energetics (GLIDE) module and induced fit docking (IFD) module were used for docking studies. The binding affinities, Gibbs free energy change (∆G) and molecular mechanics-generalized born energy/ solvent accessible area (MM-GB/SA) values for wild-type NA interactions show that both the antiviral drugs studied interact strongly with the wild-type protein. The ∆G values for all antiviral interactions with mutant NA forms were reduced in magnitude, thereby indicating that they are less favourable than interactions with the wild-type protein. A similar trend was observed with MM-GB/SA results. Amongst all of the computed values, MM-GB/SA was the closest to the experimental data. In several cases, the interactions between the anti-viral drugs and NA mutants were markedly less favourable than those between sialic acid and the same mutants, indicating that these mutations could confer anti-viral resistance. Influenza NA wild-type and H274Y mutant were expressed in baculovirus expression system (BVES) in insect cells. The expressed proteins were partially purified using the standard purification techniques of anion exchange and size exclusion chromatography (SEC). A fluorometric activity assay was performed on the recombinant proteins. Both the wild type and the mutant showed similar level of activities. In addition, the recombinant NAs were used in an inhibition assay. Oseltamivir was found to be sensitive to wild type protein (IC50 = 0.59 nM) and resistant to the H274Y mutant protein (IC50 = 349.43 nM). On the other hand, zanamivir was sensitive to both wild type (IC50 = 0.26 nM) and the H274Y mutant (IC50 = 0.44 nM). This indicated that zanamivir was a more potent inhibitor than oseltamivir. These findings were in good agreement with the literature. An SPR assay for accurate monitoring of influenza antiviral drug resistance was developed. A spacer molecule (1, 6- hexanediamine) was site-specifically tethered to the inert 7-hydroxyl group of zanamivir. The tethered zanamivir was immobilized onto an SPR GLC chip to obtain a final immobilization response of 431 response units (RU). The reference subtracted binding responses obtained for NA wild-type and H274Y mutant were analysed using the ProteOn Manager™ Software tools. The SPR curves were fitted to a simple Langmuir 1:1 model with drift to obtain association rate constant (ka) and dissociation rate constants (kd). The relative binding values obtained from literature and the current SPR assay (1.9 and 1.7 respectively) suggested that the current SPR assay yielded similar results to the existing labelled enzymatic assay. In addition, an SPR inhibition assay was developed. The calculated IC50-spr values were compared and it was observed that oseltamivir was sensitive to wild type protein (IC50-spr = 7.7 nM) and resistant to the H274Y mutant protein (IC50-spr = 256 nM). On the other hand, zanamivir was sensitive to both wild type (IC50-spr = 2.16 nM) and the H274Y mutant (IC50-spr = 2.4 nM). Sialic acid was also found to be sensitive to both wild type (IC50-spr = 5.5 nM) and H274Y mutant (IC50-spr = 3.25 nM). In the cases studied, the viral proteins remained sensitive to sialic acid, consistent with retention of virulence of these mutant strains. It was concluded that zanamivir is a more potent inhibitor than oseltamivir for treating the H274Y mutant. Comparison of the SPR inhibition results with the docking results revealed a similar trend. The wild-type NA and H27Y mutant retained binding affinity for sialic acid and zanamivir. Oseltamivir showed a significant decrease in binding affinity for the H274Y mutant compared with the wild-type. This was because of the disruption of the salt bridge formation within NA that was vital for oseltamivir activity. To my knowledge, this is the first SPR biosensor assay developed to monitor influenza antiviral drug resistance. There is a tremendous scope to extend this study to more mutants and new antiviral drugs. This could pave the way for a reliable SPR biosensor assay to replace low consistency labelled enzymatic assays.

Proliferating cell nuclear antigen (PCNA) is an essential protein in the cell. It is involved in transcription and many types of DNA repair and replication. Homologues of this protein are found in all orders of life. The high level of conservation and essential nature of PCNA infers that it may be a potential drug target for anti-caner drugs in humans and also a potential anti-parasitic target. X-ray structures of PCNA from Homo sapiens (Hs), Schizosaccharomyces pombe (Sp) and Leishmania major (Lm) are now available and can be used as a template for structure based drug design. In this work PCNA from these three species have been prepared in milligram quantities for biochemical and biophysical studies. The previously unknown structure of LmPCNA has been solved in an uncomplexed form and also complexed with a dodecapeptide to a resolution of 3.0Å. A comparison of PCNA structures and their peptide complexes for the three species identifies structural differences which may be relevant in analysing thermodynamic contributions of binding. All eukaryotic PCNA molecules exist as ring shaped trimers which form around DNA. In this work the oligomeric state of LmPCNA has been determined to be hexameric both in solution and in the crystal. It has also been hypothesised that HsPCNA is hexameric however these would seem to form hexamers in which the trimeric rings associate “back-to-back” while LmPCNA trimers would seem to associate “face-to-face”. The binding affinities for these three PCNAs have been determined with a selection of peptides derived from the Hs p21 protein. This work has shown, using a selection of different techniques including Surface Plasmon Resonance (SPR), Isothermal Titration Calorimetry (ITC) and Dynamic Scanning Fluorimetry (DSF); that HsPCNA and SpPCNA have similar affinities for a 12mer peptide (Kd of ~1μM) however LmPCNA shows significantly weaker interactions (Kd of ~10μM). This is most likely due to divergence in the sequence and structure of LmPCNA. A systematic investigation by SPR on the effect of peptide linker length on binding has been carried out using a series of synthesised peptides with different lengths of chemical spacer. The series of streptavidin immobilised peptides show that longer spacers are required for the recovery of the PCNA peptide binding affinity. The results presented in this work indicate that a linker length of at least 20Å is required for measurable protein binding activity. This interaction is improved with longer peptide spacers.

GABAB receptors are G-protein coupled receptors for the major inhibitory neurotransmitter in the mammalian central nervous system, γ-aminobutyric acid (GABA). The receptor is linked to a variety of disorders including epilepsy, pain, spasticity, drug addiction and cognitive impairment and is, therefore of major importance for drug discovery. The most abundant receptor isoforms GABABR1a and R1b differ by the presence in R1a of a pair of Nterminal extracellular complement control protein modules (CCP1 and CCP2) which - in other proteins - are generally involved in mediating specific protein-protein recognition. The CCP1 module contains disulphides but is natively disordered. In the current work, the yeast two-hybrid system was used to confirm an interaction of CCP1 of GABABR1a with the extracellular protein fibulin-2. Further work with the yeast twohybrid system extablished the novel interaction of the abundant extracellular matrix protein laminin, with GABABR1a CCP1, via its laminin globular (LG) domains. The laminin interaction was further characterised by surface plasmon resonance, demonstrating that several different domains are involved in the binding to the GABAB receptor CCPs. The primary binding site is located on laminin α5 LG4-5, but the E10 domains of the β1 chain and LG1-3 on α1 may also be involved. The pharmacological properties of the GABABR1a and R1b isoforms were studied by transient expression in Xenopus laevis oocytes. It was demonstrated that the agonist baclofen, as well as the antagonist CGP55845, appear to be more potent at GABABR1b compared to GABABR1a. Intriguingly, when recorded in the precence of laminin, GABABR1b/R2 expressing oocytes exhibited an increased baclofen-evoked response while the response in GABABR1a/R2 was completely abolished. In conclusion, the work demonstrates that laminin is a binding partner for GABABR1a CCPs. Such an interaction between the metabotropic GABA receptor and the extracellular matrix may lie behind the recently reported roles of GABA in neuronal migration and the laying down of neuronal circuitry during the development of parts of the central nervous system.

La nanochimie et l’auto-assemblage sont des voies prometteuses de fabrication de matériaux nanostructurés aux propriétés optiques innovantes dans le domaine visible. Dans cette étude, des nanocomposites plasmoniques anisotropes sont formulés en introduisant sélectivement des nanoparticules métalliques dans des phases ordonnées de copolymères diblocs symétriques selon différentes stratégies d’incorporation. Pour la stratégie de post-incorporation, des nanoparticules d’or présynthétisées en milieu aqueux sont introduites sélectivement dans des phases pré-ordonnées d’un copolymère dibloc amphiphile. L’incorporation directe consiste àmélanger des nanoparticules d’or présynthétisées et un copolymère dibloc dans un solvant commun.La synthèse in situ de nanoparticules consiste à réduire des précurseurs métalliques préalablement introduits dans un des deux blocs d’un copolymère via une étape de réduction. Nous étudions, en particulier, comment la taille des nanoparticules d’or et leur fraction volumique influencent la nanostructure et les propriétés optiques de ces films nanocomposites. La morphologie des films macroscopiques est étudiée par microscopie électronique à transmission et diffusion des rayons Xaux petits angles. Les films minces de nanocomposites sont caractérisés structurellement parmicroscopie à force atomique, microscopie électronique à transmission et réflectivité des rayons X. Les indices optiques déterminés par ellipsométrie spectroscopique peuvent être décrits par un modèle de Maxwell-Garnett, prenant éventuellement en compte de façon phénoménologique les effets de couplage entre nanoparticules d’or. / Nanochemistry and self-assembly are promising ways to fabricate nanostructuredmaterials with innovative optical properties for visible light. In this work, anisotropic plasmonicnanocomposites are formulated by selectively introducing metallic nanoparticles in ordered phasesof symmetric dibloc copolymers with different strategies. For the strategy of post-incorporation, presynthesizedgold nanoparticles in aqueous medium are selectively introduced in pre-ordered phasesof an amphiphilic dibloc copolymer. Direct incorporation consists in mixing pre-synthesized goldnanoparticles and dibloc copolymer in a common solvent. In situ synthesis of nanoparticles consistsin reducing metallic precursors previously introduced in one of two blocks of a copolymer via areduction step. The influence of the size and the volume fraction of gold nanoparticles on thenanostructure and the optical properties of the nanocomposite films have been particularly studied.Morphology of macroscopic films is studied by transmission electron microscopy and small angle Xrayscattering. The nanocomposite thin films are structurally characterized by force atomicmicroscopy, transmission electron microscopy and X-ray reflectivity. The optical indices obtained byspectroscopic ellipsometry can be described with Maxwell-Garnett models, which can take intoaccount phenomenologically the effects of coupling between gold nanoparticles.

Na primeira parte desta dissertação, nos concentramos na utilização de uma abordagem baseada na remoção oxidativa controlada de sementes/núcleos promovida pela adição de HCl na síntese poliol de nanofios de prata (Ag). Isto possibilitou um controle fino sobre a espessura dos nanofios gerados na faixa de de 65 a 765 nm, no qual as larguras obtidos apresentaram um aumento linear em função do aumento na concentração de HCl utilizado na reacção. Embora a largura também se mostrou dependente de outros parâmetros experimentais, tais como a concentração de AgNO3 e polivinilpirrolidona (PVP) e temperatura, remoção oxidativa promovida por HCl possibilitou o controle sobre uma faixa de tamanhos mais ampla. Também investigamos as propriedades ópticas dos nanofios de Ag em função do seu tamanho e sua aplicabilidade como substratos para detecção atraves do fenômeno de espalhamento Raman intensificado por superfície (SERS). Na segunda parte deste trabalho, nanotubos de Ag-Au, Ag-Pt e Ag-Pd contendo morfologias de superfície controladas foram obtidos através da reação de substituicão galvânica entre os nanofios de Ag e íons AuCl4-, PtCl62-, e PdCl42-, respectivamente. Nesse caso, superfícies lisas foram obtidas a 100 oC enquanto superfícies rugosas foram observadas a temperatura ambiente. Mostramos ainda que superfícies lisas também puderam ser obtidas usando-se uma solução saturada de NaCl como solvente durante a reação galvânica. Na terceira parte deste trabalho, investigamos o efeito da excitação da ressonância plasmônica de superfície (SPR) nos nanofios de Ag sobre a atividade catalítica frente a redução do 4-nitrofenol. Contudo, nossos resultados mostraram um queda da atividade catalítica pela excitação SPR, mostrando que a excitação do SPR também pode levar a efeitos detrimentais sobre a atividade catalítica dependendo do mecanismo de reação estudado e natureza de intermediários na etapa determinante da velocidade de reação. Como as propriedades de nanoestruturas metálicas são fortemente dependentes de tamanho, forma e composição, acreditamos que os resultados apresentados aqui relatados podem ter implicações importantes para o design de nanomateriais unidimensionais com características/propriedades desejadas para aplicações em diversas áreas, incluindo óptica e catalise. / In the first part of this thesis, we focused on the utilization of an approach based on controlled oxidative etching for the removal of seeds/nuclei promoted by the addition of HCl in the polyol synthesis of silver nanowires (Ag). This allowed a precise control over the width of the Ag nanowires in the 65-765 nm range. In this case, the widths showed a linear increase with the HCl concentration employed in the reaction. While the width was also dependent on other experimental parameters such as the concentration of AgNO3 and polyvinylpyrrolidone (PVP) as well as the temperature, oxidative etching promoted by HCl enabled the control over a wider range of sizes. We also investigated the optical properties of Ag nanowires as a function of their size and their applications as substrates for surface enhanced Raman scattering (SERS). In the second part of this work, Ag-Au, Ag-Pt, and Ag-Pd nanotubes displaying controlled surface morphologies were obtained by galvanic replacement reaction between the Ag nanowires and AuCl4-, PtCl62-, e PdCl42- ions, respectively. In this case, while smooth surfaces were obtained at 100 °C, rough surfaces were observed at room temperature. We also showed that smooth surfaces could be obtained by using a saturated solution of NaCl as the solvent during the galvanic reaction. Finally, in the third part of this study, we investigated the effect of surface plasmon resonance (SPR) excitation on Ag nanowires over the catalytic activity towards the 4-nitrophenol reduction. However, our results indicated a drop in catalytic activity with SPR excitation, showing that the SPR excitation can also lead to detrimental effects on the catalytic activity depending on the nature of the chemical reaction mechanism and intermediates in the rate-determining step of the reaction. As properties in metallic nanostructures are strongly dependent on size, shape and composition, we believe that the results reported here may have important implications for the design of one-dimensional nanomaterials design with desired features/properties for applications in various fields that include optics and catalysis.

Surface plasmons are collective oscillations of free electrons excited at a metal-dielectric interface by incident light. They possess a broad set of interesting properties including a high degree of tunability, the generation of strong field enhancements close to the metal's surface and high sensitivity to their adjacent dielectric environment. It is possible to enhance the sensitivity of plasmonic systems by using narrow plasmon resonances. In this thesis two approaches to narrowing surface plasmon resonances have been studied: diffraction coupling of localised surface plasmon resonances in gold nanoarrays and the use of graphene-protected copper thin films. Applications of these approaches in hybrid systems have been considered for modulation, waveguiding, biosensing and field enhancements. Arrays of gold nanostripes fabricated on a gold sublayer have been used to create extremely narrow plasmon resonances using diffraction coupling of localised plasmon resonances with quality factors up to a value of $Q \sim 300$, among the highest reported in the literature. The nanostructures were designed to give the narrowest resonance at the telecommunication wavelength of 1.5 µm, allowing for this array geometry to be used in hybrid systems for proof-of-concept optoelectronic devices. The gold nanostripe array was used in a hybrid nanomechanical electro-optical modulator along with hexagonal boron nitride (hBN) and graphene. The modulator was fabricated with an air gap between the nanoarray and the hexagonal boron nitride/graphene. Applying a gate voltage across the device moves the hBN towards the nanoarray, resulting in broadband modulation effects from the ultraviolet through to the mid-infrared dependant on the motion of the hBN instead of graphene gating. The deposition of a 400 nm hafnium(IV) oxide film on top of the gold nanoarray created a structure capable of guiding modes at 1.5 µm. The hybrid air-dielectric-stripe waveguide is capable of guiding modes over a distance of 250 µm. Copper thin films have stronger plasmon resonances and higher phase sensitivity than gold thin films. Transferring a graphene sheet on the copper prevents oxidation of the copper. A feasibility study of this hybrid system has shown that phase-sensitive graphene-protected copper biosensing can detect HT-2 mycotoxin with over four orders of magnitude greater sensitivity than commercially-available gold-based surface plasmon resonance biosensing systems. In summary, two methods of attaining narrow plasmon resonances have been demonstrated and their promise in modulation, waveguiding and biosensing have been demonstrated.

Optical detection devices such as optical biosensors and optical spectrometers are widely used in many applications for the functions of measurements, inspections and analysis. Due to the large dimension of prisms and gratings, the traditional optical devices normally occupy a large space with complicated components. Since cheaper and smaller optical devices are always in demand, miniaturization has been kept going for years. Thanks to recent fabrication advances, nanophotonic devices such as semiconductor laser chips have been growing in number and diversity. However, the optical biosensor chips and the optical spectrometer chips are seldom reported in the literature. For the reason of improving system integration, the study of ultra-compact, low-cost, high-performance and easy-alignment optical biosensors and optical spectrometers are imperative. This thesis is an endeavor in these two subjects and will present our research work on studying the optical transmission properties of dielectric aperture arrays and developing new optical biosensors and optical spectrometers. / Subsequently, optical transmission properties through a self-mixing interferometer array are studied and a novel high-resolution cost-effective optical spectrometer is proposed. The miniature interferometer-based spectrometer is made of polymethyl methacrylate (PMMA) with a CCD as the detector. The detected intensity of each CCD pixels contains the spectral information. Since each frequency component in the incoming beam corresponds to a unique phase difference of the two beam portions of each optical interferometer, the total intensity received by each CCD pixel, which is resulted from the addition of the interference signals from all the frequency components in the beam, should also be unique. Therefore, the spectrum calculation is a problem to solve an ill-posed linear system by using Tikhonov regularization method. Simulation results show that the resolution can reach picometer level. Apart from the choice of path difference between the interfering beams, the spectral resolution also depends on the signal-to-noise ratio and analogue-digital conversion resolution (dynamic range) of the CCD chip. In addition, the theory of uniform waveguide scattering is explored to expand the possibility of using such mini-interferometers for performing free-space spectral analysis of waveguide devices. At the same time, the method of least squares is used to correct the pixel non-uniformity of the CCD so as to improve the performance of the spectrometer. / The first half of the thesis demonstrates that the optical phase shift associated with the surface plasmon (SP) assisted extraordinary optical transmission (EOT) in nano-hole arrays fabricated in a metal film has a strong dependence on the material refractive index value in close proximity to the holes. A novel refractive index sensor based on detecting the EOT phase shift is proposed by building a model. This device readily provides a 2-D biosensor array platform for non-labeled real-time detection of a variety of organic and biological molecules in a sensor chip format, which leads to a high packing density, minimal analyte volumes, and a large number of parallel channels while facilitating high resolution imaging and supporting a large space-bandwidth product (SBP). Simulation (FDTD Solutions, Lumerical Solutions Inc) results indicate an achievable sensitivity limit of 4.37x10-9 refractive index units (RIU) and a dynamic range as large as 0.17 RIU. / The sensor chip and spectrometer chip introduced here are based on the interference of light transmitted through dielectric aperture arrays. Their compact feature renders these devices ideal for miniaturization and integration as the systems in microfluidics architectures and lab-on-chip designs. / Yang, Tao. / Adviser: H. P. Ho. / Source: Dissertation Abstracts International, Volume: 72-04, Section: B, page: . / Thesis (Ph.D.)--Chinese University of Hong Kong, 2010. / Includes bibliographical references (leaves 150-163). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Electronic reproduction. Ann Arbor, MI : ProQuest Information and Learning Company, [200-] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Abstract also in Chinese.