The sizes of a bubble trapped in solid after nucleation on the solidification front during an upward freezing of water containing a dissolved oxygen or carbon dioxide gas are experimentally measured and quantitatively predicted in this work. From an in situ measurements of bubble shapes in solid at cold temperatures of -25 and -15 C, it quantitatively shows that pore formation can be divided into five regimes: (1) nucleation on the solidification front, (2) spherical growth, (3) solidification rate-controlled elongation, (4) disappearance of the bubbles, and (5) formation of the pores in solid. To interpret experimental results, equations incorporated with the growth rate of a spherical bubble and solidification rate to predict bubble shapes in the solid during the spherical growth and solidification rate-controlled elongation are successfully proposed. Experimental data show the effects of initial gas concentration and solidification rate on geometries of the bubble in solid.

In this dissertation¡Atwo topics in microbubble systems are investigated¡G1) Pore Formation from Bubble Entrapment by a Solidification Front¡F2) Pore formation in Solid¡C In the first study¡Amechanism of the pore shape in solid resulted from a tiny bubble captured by a solidification front is geometrically and generally investigated¡CPore formation and its shape in solid are one of the most critical factors affecting properties¡Amicrostructure¡Aand stresses in materials¡CFor simplicity without loss of generality, the tiny bubble beyond the solidification front is considered to have a spherical cap in this work¡CIntroducing a geometrical analysis it is found that the contact angle of the bubble cap can be governed by the Abel¡¦s equation of the first kind in terms of displacement of the solidification front¡CThe pore can be elongated, expanded¡Ashrunk and closed¡Adepending on relative variation of the bubble growth rate and solidification rate¡CThe pore can be closed by imposing infinitesimal bubble growth rate-to-solidification rate ratio¡Aand a finite bubble growth-to-solidification rate ratio in order to produce a minimal bubble radius at the contact angle of ¡CA criterion intuitively accepted in the literature¡Astating that closure of a pore is attributed to a greater solidification rate than bubble growth rate¡Ais incorrect¡CThe predicted pore shape and contact angle agree with experimental observations¡CManipulating either bubble growth rate or solidification rate can control pore formation in solid¡C In second study¡Athe shapes of a growing or decaying bubble entrapped by a solidification front are predicted in this work¡CThe bubble results from supersaturation of a dissolved gas in the liquid ahead of the solidification front¡CPore formation and its shape in solid are one of the most critical factors affecting properties¡Amicrostructure, and stresses in materials¡CIn this study¡Athe bubble and pore shapes entrapped in solid can be described by a three-dimensional phase diagram¡Aobtained from perturbation solutions of Young-Laplace equation governing the tiny bubble shape in the literature¡CThe predicted growth and entrapment of a microbubble as a pore in solid are found to agree with experimental data¡CThis work thus provides a realistic prediction of the general growth of the pore shape as a function of different working parameters¡C

Here we seek to identify the conditions for the collapse of the molten metal layer surrounding a keyhole filled with vapor and liquid particles during high power density laser and electron beam welding processes. Investigating the collapse of the liquid layer is essential for a fundamental understanding of pore formation in the keyhole mode welding. We treat the collapse of the keyhole as similar to a transition between the slug and annular two-phase flows in a vertical pipe of varying cross-section. A quasi-steady, one-dimensional model for two-phase flow is developed and solved assuming that the mixture in the core is homogenous. Ignoring friction within the liquid layer and considering supersonic flow in the keyhole, the two phase flow regimes can be divided into four regions characterized by entrainment and deposition of liquid particles. Keyhole collapse occurs from entrainment, whereas the keyhole exhibits wavy shape from deposition. A condition for the formation of macro-porosity based on a fundamental understanding of annular two-phase flow is presented.

Parabutoporin (PP) and opistoporin 1 (OP1) are cation, a-helical antimicrobial peptides isolated from the southern African scorpion species, Parabuthus schlechteri and Opistophthalmus carinatus, respectively. Along with their antimicrobial action against bacteria and fungi, these peptides show pore-forming properties in the membranes of mammalian cells. Pore-formation and ion selectivity in cardiac myocytes were investigated by measuring the whole cell leak current by means of the patch clamp technique. Pore-formation was observed as the induction of leak currents. Ion selectivity of the pores was indicated by the shift of the reversal potential (E,,,) upon substitution of intra (K' with CS' and CI- with aspartate) and extracellular (Na' with NMDG') ions. Results were compared with the effect of gramicidin A used as a positive control for monovalent cation selective pores. PP and OP I induced a fluctuating leak current and indicate non-selectivity of PP and OP1-induced pores. An osmotic protection assay to determine estimated pore size was performed on the cardiac myocytes. PP and OP1-induced pores had an estimate pore size of 1.38-1.78 nm in diameter. The effect of PP and OP1 on the membrane potential (MP) of a neuroblastoma cell line and cardiac myocytes was investigated. TMRM was used to mark the MP fluorescently and a confocal microscope used to record the data digitally. The resting membrane potential (RMP) of the neuroblastoma cells was calculated at -38.3 f 1.9 mV. PP (0.5 uM) and OP1 (0.5-1 uM) depolarized the entire cell uniformly to a MP of -1 1.9 k 3.9 mV and -9.4 k 1.9 mV, respectively. This occurred after 20-30 min of peptide exposure. In the case of the cardiac myocytes depolarization was induced to -39.7 f 8.4 mV and -32.6 f 5.2 mV by 0.5-1 uM PP and 1.5-2.5 uM OPl, respectively. / Thesis (M.Sc. (Physiology))--North-West University, Potchefstroom Campus, 2006.

Legionella pneumophila, o agente etiológico da doença dos Legionários, é conhecida por desencadear a formação de poro em membranas de macrófagos derivados de medula óssea (BMMs) por mecanismos dependentes do sistema de secreção do tipo IV conhecido como Dot/Icm. Neste trabalho, foram utillizados vários mutantes de L. pneumophila em combinação com camundongos nocautes para investigar os fatores bacterianos e do hospedeiro envolvidos na formação de poro em BMMs. Observamos que apesar da atividade do Dot/Icm, a formação de poro não ocorre em BMMs deficientes para caspase-1 e Nlrc4. A formação de poro foi temporalmente associada com a secreção de IL-1b e precedeu a lise celular e a piroptose. A formação de poro foi dependente do Dot/Icm, mas independente de várias proteínas efetoras, da multiplicação bacteriana e da síntese de novo de proteínas. A flagelina, a qual é conhecida em ativar o inflamassoma de Nlrc4, foi necessária para a formação de poro; a bactéria mutante flaA falhou em induzir a permeabilização celular. Consequentemente, a transfecção da flagelina purificada foi suficiente para desencadear a formação de poro independente da infecção. Utilizando 11 diferentes espécies de Legionella, nós observamos alta formação de poro em resposta à L. micdadei, L. bozemanii, L. gratiana, L. jordanis e L. rubrilucens, e essa resposta estava correlacionada com a expressão de flagelina por essas espécies. Além disso, verificamos que as proteínas Asc e Caspase-11 apresentam fenótipo intermediário na formação de poro, sugerindo que outras vias podem estar envolvidas no processo. Observamos também que a formação de poro desencadeada por L. pneumophila difere daquela induzida pelo ATP. Em conjunto, nossos resultados sugerem que a formação de poro não é uma resposta específica de L. pneumophila nem o resultado de dano da membrana induzido pelo Dot/Icm. Ao invés disso, a formação de poro é uma resposta do hospedeiro altamente coordenada, dependente dos componentes do inflamassoma Nlrc4 e caspase-1 e é desencadeada em resposta a bactérias que expressam o sistema de secreção do tipo IV e flagelina. / Legionella pneumophila, the etiological agent of Legionnaires disease, is known to trigger pore formation in bone marrow-derived macrophages (BMMs) by mechanisms dependent on the type IVB secretion system known as Dot/Icm. Here, we used several mutants of L. pneumophila in combination with knockout mice to assess the host and bacterial factors involved in pore formation in BMMs. We found that regardless of Dot/Icm activity, pore formation does not occur in BMMs deficient in caspase-1 and Nlrc4/Ipaf. Pore formation was temporally associated with IL-1b secretion and preceded host cell lysis and pyroptosis. Pore-forming ability was dependent on bacterial Dot/Icm but independent of several effector proteins, multiplication and de novo protein synthesis. Flagellin, which is known to trigger the Nlrc4 inflammasome, was required for pore formation as flaA mutant bacteria failed to induce cell permeabilization. Accordingly, transfection of purified flagellin was sufficient to trigger pore formation independent of infection. By using 11 different Legionella species, we found robust pore formation in response to L. micdadei, L. bozemanii, L. gratiana, L. jordanis and L. rubrilucens, and this trait correlated with flagellin expression by these species. Furthermore, we found that Asc and Caspase-11 showed an intermediate phenotype in pore formation, suggesting that other pathways may be involved in this process. We also observed that the pore formation triggered by L. pneumophila differs from the pore induced by ATP. Together, the results suggest that pore formation is neither L. pneumophilaspecific nor the result of membrane damage induced by Dot/Icm activity; instead, it is a highly coordinated host cell response dependent on host Nlrc4 and caspase-1 and on bacterial flagellin and type IV secretion system.

This text pursues the causes and phenomena in the course of the collapse of the molten metal layer surrounding a keyhole which is full of vapor and liquid particles during the high energy laser or electron beam drilling process. And the formation mechanism of the pores for the drilling process, to study the collapse phenomenon of the liquid layer is essential. In the research the collapse of the keyhole is taken as approximated to a transition between the slug and annular two-phase flows in a vertical pipe of varying cross-section. We develop and solve a quasi-steady, one-dimensional model for two phase flow with the assumption that the mixture in the core homogenous, ignoring the friction of the liquid layer, regarding the flow in the keyhole as supersonic, considering the mass transfer of the liquid layer to the keyhole. Two-phase flow can be liquid particle entrainment characteristics, infiltration precipitation, divided into two regions. The collapse of keyhole resulted from the infiltration of the liquid particles is chained to the pore formation. Based on the realization of annular two phase flow, In this text, that the liquid into the holes in the physical properties and caused pores formation.

Parabutoporin (PP) and opistoporin 1 (OP1) are cation, a-helical antimicrobial peptides isolated from the southern African scorpion species, Parabuthus schlechteri and Opistophthalmus carinatus, respectively. Along with their antimicrobial action against bacteria and fungi, these peptides show pore-forming properties in the membranes of mammalian cells. Pore-formation and ion selectivity in cardiac myocytes were investigated by measuring the whole cell leak current by means of the patch clamp technique. Pore-formation was observed as the induction of leak currents. Ion selectivity of the pores was indicated by the shift of the reversal potential (E,,,) upon substitution of intra (K' with CS' and CI- with aspartate) and extracellular (Na' with NMDG') ions. Results were compared with the effect of gramicidin A used as a positive control for monovalent cation selective pores. PP and OP I induced a fluctuating leak current and indicate non-selectivity of PP and OP1-induced pores. An osmotic protection assay to determine estimated pore size was performed on the cardiac myocytes. PP and OP1-induced pores had an estimate pore size of 1.38-1.78 nm in diameter. The effect of PP and OP1 on the membrane potential (MP) of a neuroblastoma cell line and cardiac myocytes was investigated. TMRM was used to mark the MP fluorescently and a confocal microscope used to record the data digitally. The resting membrane potential (RMP) of the neuroblastoma cells was calculated at -38.3 f 1.9 mV. PP (0.5 uM) and OP1 (0.5-1 uM) depolarized the entire cell uniformly to a MP of -1 1.9 k 3.9 mV and -9.4 k 1.9 mV, respectively. This occurred after 20-30 min of peptide exposure. In the case of the cardiac myocytes depolarization was induced to -39.7 f 8.4 mV and -32.6 f 5.2 mV by 0.5-1 uM PP and 1.5-2.5 uM OPl, respectively. / Thesis (M.Sc. (Physiology))--North-West University, Potchefstroom Campus, 2006.

Legionella pneumophila, o agente etiológico da doença dos Legionários, é conhecida por desencadear a formação de poro em membranas de macrófagos derivados de medula óssea (BMMs) por mecanismos dependentes do sistema de secreção do tipo IV conhecido como Dot/Icm. Neste trabalho, foram utillizados vários mutantes de L. pneumophila em combinação com camundongos nocautes para investigar os fatores bacterianos e do hospedeiro envolvidos na formação de poro em BMMs. Observamos que apesar da atividade do Dot/Icm, a formação de poro não ocorre em BMMs deficientes para caspase-1 e Nlrc4. A formação de poro foi temporalmente associada com a secreção de IL-1b e precedeu a lise celular e a piroptose. A formação de poro foi dependente do Dot/Icm, mas independente de várias proteínas efetoras, da multiplicação bacteriana e da síntese de novo de proteínas. A flagelina, a qual é conhecida em ativar o inflamassoma de Nlrc4, foi necessária para a formação de poro; a bactéria mutante flaA falhou em induzir a permeabilização celular. Consequentemente, a transfecção da flagelina purificada foi suficiente para desencadear a formação de poro independente da infecção. Utilizando 11 diferentes espécies de Legionella, nós observamos alta formação de poro em resposta à L. micdadei, L. bozemanii, L. gratiana, L. jordanis e L. rubrilucens, e essa resposta estava correlacionada com a expressão de flagelina por essas espécies. Além disso, verificamos que as proteínas Asc e Caspase-11 apresentam fenótipo intermediário na formação de poro, sugerindo que outras vias podem estar envolvidas no processo. Observamos também que a formação de poro desencadeada por L. pneumophila difere daquela induzida pelo ATP. Em conjunto, nossos resultados sugerem que a formação de poro não é uma resposta específica de L. pneumophila nem o resultado de dano da membrana induzido pelo Dot/Icm. Ao invés disso, a formação de poro é uma resposta do hospedeiro altamente coordenada, dependente dos componentes do inflamassoma Nlrc4 e caspase-1 e é desencadeada em resposta a bactérias que expressam o sistema de secreção do tipo IV e flagelina. / Legionella pneumophila, the etiological agent of Legionnaires disease, is known to trigger pore formation in bone marrow-derived macrophages (BMMs) by mechanisms dependent on the type IVB secretion system known as Dot/Icm. Here, we used several mutants of L. pneumophila in combination with knockout mice to assess the host and bacterial factors involved in pore formation in BMMs. We found that regardless of Dot/Icm activity, pore formation does not occur in BMMs deficient in caspase-1 and Nlrc4/Ipaf. Pore formation was temporally associated with IL-1b secretion and preceded host cell lysis and pyroptosis. Pore-forming ability was dependent on bacterial Dot/Icm but independent of several effector proteins, multiplication and de novo protein synthesis. Flagellin, which is known to trigger the Nlrc4 inflammasome, was required for pore formation as flaA mutant bacteria failed to induce cell permeabilization. Accordingly, transfection of purified flagellin was sufficient to trigger pore formation independent of infection. By using 11 different Legionella species, we found robust pore formation in response to L. micdadei, L. bozemanii, L. gratiana, L. jordanis and L. rubrilucens, and this trait correlated with flagellin expression by these species. Furthermore, we found that Asc and Caspase-11 showed an intermediate phenotype in pore formation, suggesting that other pathways may be involved in this process. We also observed that the pore formation triggered by L. pneumophila differs from the pore induced by ATP. Together, the results suggest that pore formation is neither L. pneumophilaspecific nor the result of membrane damage induced by Dot/Icm activity; instead, it is a highly coordinated host cell response dependent on host Nlrc4 and caspase-1 and on bacterial flagellin and type IV secretion system.

京都大学 / 0048 / 新制・課程博士 / 博士(医学) / 甲第22367号 / 医博第4608号 / 新制||医||1043(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 戸口田 淳也, 教授 妻木 範行, 教授 安達 泰治 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

All organisms have cell membranes which are composed of lipids. The length of lipids affects the elastic properties of the cell membrane which play an important role in cell's survival. For instance, membrane flexibility controls the amount of stress that a membrane can sustain before pore formation. In the bacterial cell membranes, the pore formation is also induced by naturally occurring peptides and synthetic amphiphilic copolymers. For this reason, they are one of the most anticipated novel antimicrobial materials. Understanding the mechanism of their action is essential for their use against microbes. Using coarse-grained simulations and a mean field model, we study lipid bilayer membranes under the variation of stress and tail length, as well as their interaction with flexible amphiphilic copolymers. We used a polymer brush model to describe the free energy of the membrane in terms of entropic contributions and hydrophobic interactions. As the stress is increased on the membranes, at high stresses, the membrane transits to a stable pore state in agreement with simulation results. The increased hydrophobic interaction energy at the interface at high stresses leads to the formation of a pore. The hydrophobic interactions induce a contraction stress and the entropy of lipid tails induces a repulsive stress on the membrane. The simulations show that the entropic contribution to the stress, at its positive values, decreases as the length of lipid tails is increased. This increases the tendency of the membrane with the longer lipids to withstand larger stresses before rupturing into pores, as the internal repulsive stress is reduced. We show that copolymers can enhance the pore stability by decreasing the line tension due to the weak adsorption along the rim of the pore. The bilayers studied in our simulations do not require high copolymer concentration at the pores nor any self-organization of the copolymers to open the pore. This is in contrast to the commonly known barrel stave model where the copolymers are assumed to be strongly localised at the rim of the pore. In the presence of the copolymers, we observe a meta-stable pore state of membrane. This happens at a specific concentration of copolymers depending upon the stress acting on the membrane. If the concentration is further increased from this value, then, the membrane shifts to a stable pore state. An increase in the probability of pore formation is observed as the length of copolymers or stress on the membrane are increased. Both the solvent and copolymer permeability increase as the pore becomes stable.