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First-principles simulations of the interaction of metal-organic molecules with a surface and as building blocks for nanodevices / Etudes par simulations à l'échelle atomique de l'interaction de molécules organométalliques avec une surface et briques élémentaires pour la réalisation de nano-dispositifsÖzdamar, Burak 28 October 2016 (has links)
Ce travail de thèse est focalisé sur l'interaction de molécules organométalliques avec des métaux de transition. Cette thématique a un large éventail d'applications dans plusieurs domaines tels que la réalisation de nanojonctions pour la nano-électronique, la bioimagerie et le stockage d'énergie magnétique, la nano-catalyse et les applications biomédicales. Dans ce cadre général, ce projet de thèse vise la modélisation à l’échelle atomique des interactions fondamentales entre les briques moléculaires afin de comprendre leur rôle dans l’assemblage et la fonctionnalisation des nanostructures. L’outil principal utilisé est la dynamique moléculaire à partir des premiers principes selon les approches Born-Oppenheimer et Car-Parrinello. La première partie de cette thèse présente une rétrospective du domaine afin de donner une vision d’ensemble des méthodes utilisées et de l’état de l’art dans ce domaine. Le deuxième chapitre donne les éléments de base de la théorie et les méthodes qui ont été utilisées dans la thèse, au développement desquels on a aussi contribué pendant ce projet de recherche. Les résultats obtenus et leur discussion critique constituent le corps principal de cette ouvrage de thèse. Ceci est organisé dans un chapitre unique (troisième chapitre), divisé en trois sous-chapitre pour des raisons de clarté. / The purpose of this study is to investigate the interaction of organometallic complexes with transition metals. This topic in question has a broad array of applications in a number of domain; realization of nanojunctions for molecular nanoelectronics, biological imaging and nanocatalysis. Within this general framework, this PhD project aims to model the fundamental interactions of molecular building blocks at the atomic level in order to understand their role in the assembly and functionalization of nanostructures. The principal tool used in this study is first-principles simulation methods such as the Born-Oppenheimer and Car-Parrinello molecular dynamics. The first chapter presents an emphasis of the current developments in the related field alongside of a retrospective on the historical developments that leads today's knowledge. The second chapter presents the basic elements of the theory behind the methods that were used in the thesis, whose development has also been contributed during this research project. Lastly, the third chapter which is organized in three sub-chapters enumerates and describes the results of the various systems studied.Molecular dynamics, constrained dynamics, molecular electronics, molecular junctions, ferrocene, fullerene, metal-organic precursors.
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Thin Films From Metalorganic Precursors : ALD Of VO2 And CVD Of (Al1-xGax)2O3Dagur, Pritesh 02 1900 (has links)
Thin films and coatings of oxides are used in various fields of science and technology, such as semiconductor and optoelectronic devices, gas sensors, protective and wear resistant coatings etc. Of late, there has been a tremendous interest in pure and doped vanadium dioxide as thermoelectric switch material. VO2 has been doped with hetero-atoms such as W, Mo, Nb, Ti etc. and effects of doping have been correlated with feasibility of being used as a smart window material. The oxide Al2O3 has been studied as an alternative gate dielectric. Ga2O3 is also a contender for replacing SiO2 as a dielectric material.
Atomic layer deposition (ALD) is a technique for the deposition of thin films of various materials and is found to be of considerable scientific and technological importance. In particular, using β-diketonate complexes as precursors is very useful in preparing thin films of oxides, as these precursors already contain a metal-oxygen bond. In this thesis, β-diketonate complexes have been used as precursors for deposition of thin films. The thesis has been divided into two parts: First part deals with deposition and characterization of thin films of VO2 on glass and fused quartz. The second part deals with synthesis and chemical and thermal characterization of bimetallic Al-Ga acetylacetonates along with thin film deposition using the same.
Chapter 1 presents a brief introduction to application of thin films of oxides in various fields of science and technology. A brief introduction to the ALD reactor used for the current work is also presented. The importance of thermal analysis of precursors for CVD is briefly reviewed. Chapter 2 deals with the instruments and methods used for the work done for this thesis. In Chapters 3 and 4 of the thesis, a detailed study of deposition of VO2 films on glass and fused quartz has been presented. The films deposited have been analyzed using a host of techniques, for their texture, microstructure and electrical properties. In spite of chemical similarities, considerable differences in structure and properties have been observed between the films deposited on the two substrates. These differences have been explained on the basis of the small chemical differences between the two substrates. Chapters 5, 6 and 7 deal with synthesis, thermal characterization and use of bimetallic Al-Ga precursors, respectively. The bimetallic acetylacetonates have been synthesized using ‘homogenization in solution’ approach. Chemical characterization of the precursors revealed that nominal percentages of Al and Ga are retained in the solid precursors. Single crystal structure confirmed the observation. Thermal analysis of the precursors showed that the precursors, which are solid solutions of Al and Ga acetylacetonates, show negative deviation from the Raoult’s Law. Films were deposited using these precursors and were found to near completely retain the composition of the precursors. Chapter 8 of the thesis presents the conclusions of the current work and proposes future directions.
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The synthesis, structure and reactivity of iron-bismuth complexes : Potential Molecular Precursors for Multiferroic BiFeO3Wójcik, Katarzyna 15 June 2010 (has links) (PDF)
The thesis presented here is focused on the synthesis of iron-bismuth alkoxides and siloxides as precursors for multiferroic BiFeO<sub>3</sub> systems. Spectrum of novel cyclopentadienyl substituted iron-bismuth complexes of the general type [{Cp<sup>y</sup>(CO)<sub>2</sub>Fe}BiX<sub>2</sub>], as potential precursors for cyclopentadienyl iron-bismuth alkoxides or siloxides [{Cp<sup>y</sup>(CO)<sub>2</sub>Fe}Bi(OR)<sub>2</sub>] (R-O<sup>t</sup>Bu, OSiMe<sub>2</sub><sup>t</sup>Bu), were obtained and characterised. The use of wide range of cyclopentadienyl rings in the iron carbonyl compounds allowed for a comprehensive analysis of its influence on structure, reactivity as well as solubility of the studied complexes, which are crucial features of potential precursors. The results fill the gap in the chemistry of cyclopentadienyl iron-bismuth complexes.
In this work a new method of preparation of novel alkoxides or siloxides iron-bismuth complexes has been developed. In the reaction of Fe<sub>2</sub>(CO)<sub>9</sub> with Bi(O<sup>t</sup>Bu)<sub>3</sub> or Bi(OSiMe<sub>2</sub><sup>t</sup>Bu)<sub>3</sub> molecular precursors for preparation of heterobimetallic oxides were obtained. Moreover, characterised compounds allowed to extend the knowledge about existence of iron-bismuth clusters and open new ways for the further investigations on the carbonyl iron-bismuth siloxides and alkoxides. The resulting compounds are good single source precursors for the BiFeO<sub>3</sub> materials. The presented synthetic route can be generalized and other heterobimetallic compounds can be obtained. This work should also be helpful in the designing new precursors for synthesis of metal oxides.
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La RNase P mitochondriale chez Neurospora crassaMinoiu, Ioana 12 1900 (has links)
Résumé
La Ribonucléase P (RNase P) est une enzyme principalement reconnue pour sa participation à la maturation en 5’des ARN de transfert (ARNt). Cependant, d’autres substrats sont reconnus par l’enzyme. En général, la RNase P est composée d’une sous-unité ARN (le P-ARN, codé par le gène rnpB) qui porte le centre actif de l’enzyme et d’une ou de plusieurs sous-unités protéiques (la P-protéine).
Les P-ARN chez toutes les bactéries, la majorité des archéobactéries et dans le génome nucléaire de la plupart des eucaryotes, possèdent généralement une structure secondaire très conservée qui inclut le noyau (P1-P4); l’hélice P4 constitue le site catalytique de l’enzyme et l’hélice P1 apparie les extrémités du P-ARN en stabilisant sa structure globale. Les P-ARN mitochondriaux sont souvent moins conservés et difficiles à découvrir. Dans certains cas, les seules régions de structure primaire qui restent conservées sont celles qui définissent le P4 et le P1.
Pour la détection des gènes rnpB, un outil de recherche bioinformatique, basé sur la séquence et le profil de structure secondaire, a été développé dans le laboratoire. Cet outil permet le dépistage de toutes les séquences eucaryotes (nucléaires et mitochondriales) du gène avec une très grande confiance (basée sur une valeur statistique, E-value). Chez les champignons, plusieurs ascomycètes encodent un gène rnpB dans leur génome mitochondrial y compris tous les membres du genre d’Aspergillus. Cependant, chez les espèces voisines, Neurospora crassa, Podospora anserina et Sordaria macrospora, une version mitochondriale de ce gène n’existe pas. Au lieu de cela, elles contiennent deux copies nucléaires du gène, légèrement différentes en taille et en contenu nucléotidique.
Mon projet a été établi dans le but d’éclaircir l’évolution de la RNase P mitochondriale (mtRNase P) chez ces trois espèces voisines d’Aspergillus.
En ce qui concerne les résultats, des modèles de structures secondaires pour les transcrits de ces gènes ont été construits en se basant sur la structure consensus universelle de la sous-unité ARN de la RNase P. Pour les trois espèces, par la comparaison de ces modèles, nous avons établi que les deux copies nucléaires du gène rnpB sont assez distinctes en séquence et en structure pour pouvoir y penser à une spécialisation de fonction de la RNase P. Chez N. crassa, les deux P-ARN sont modifiés probablement par une coiffe et les extrémités 5’, 3’ sont conformes à nos modèles, ayant un P1 allongé. Encore chez N. crassa, nous avons constaté que les deux copies sont transcrites au même niveau dans le cytoplasme et que la plus petite et la plus stable d’entre elles (Nc1) se retrouve dans l’extrait matriciel mitochondrial. Lors du suivi du P-ARN dans diverses sous-fractions provenant de la matrice mitochondriale soluble, Nc1 est associée avec l’activité de la RNase P. La caractérisation du complexe protéique, isolé à partir de la fraction active sur un gel non dénaturant, révèle qu’il contient au moins 87 protéines, 73 d’entre elles ayant déjà une localisation mitochondriale connue. Comme chez la levure, les protéines de ce complexe sont impliquées dans plusieurs fonctions cellulaires comme le processing de l’ADN/ARN, le métabolisme, dans la traduction et d’autres (par exemple : la protéolyse et le repliement des protéines, ainsi que la maintenance du génome mitochondrial). Pour trois protéines, leur fonction est non déterminée. / Abstract
Ribonuclease P (RNase P) is an endonuclease that cleaves 5’- leader sequences from tRNA precursors and a few other small RNAs. In most cases, the enzyme is a ribonucleo-protein complex (ribozyme), containing an RNA subunit (P-RNA; encoded by the rnpB gene) that carries the active centre of the enzyme, plus one or more protein subunits.
P-RNAs in Bacteria, Eukarya and Archaea have a highly conserved secondary structure including the core P1 and P4 helices. P4 forms the catalytic site of the ribozyme, and P1 pairs the RNA termini, stabilizing overall structure and protecting from nuclease degradation. For processing of mitochondrial (mt) tRNAs, certain eukaryotic species (e.g., Saccharomyces cerevisiae, Aspergillus nidulans) have separate mtDNA-encoded P-RNAs (of bacterial origin). Mt P-RNAs are often less conserved, and difficult to discover.
To identify rnpB genes, we have developed a search tool based on sequence plus secondary structure profiles. It predicts all known eukaryotic (nuclear and organellar) rnpB genes with high confidence (based on E-values). In fungi, many ascomycetes encode a mitochondrial rnpB gene, including all members of Aspergillus. Yet, the closely related Neurospora crassa, Podospora anserina and Sordaria macrospora lack an mtDNA-encoded gene version. Instead, they contain two nuclear gene copies with slightly different sequences.
My project aims to elucidate the evolution of mitochondrial RNase P in these three closely related species.
We have established secondary structure models based on comparisons with the universal minimum consensus secondary structure for all nuclear gene mtP-RNAs copies in all three species. By comparison of these secondary structure models, we have established that the two nuclear copies of rnpB gene are quite distinct in sequence and structure, suggesting a specialization of function. In N. crassa, both P-RNAs are modified most likely by capping, and 5’- 3’ termini perfectly conform to P-RNA structure models that have an elongated P1 helical pairing. Furthermore, we find that the two nuclear copies of rnpB gene are present at about the same level in the cytoplasm, and that the shorter form of P-RNA (Nc1) translocates into the (soluble) mitochondrial matrix. When tracing P-RNA in different mitochondrial sub-fractions of a native gel, the presence of Nc1 and mitochondrial RNase P activity are associated. A proteomics characterization of a P-RNA complex isolated by native gel electrophoresis reveals that it contains at least 87 proteins, 73 of which are of known mitochondrial localization. Like in yeast, the complex contains proteins potentially involved in other DNA/RNA processing activities, but also in translation, in metabolism, and in protein folding. Only three proteins are of unknown function.
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Studies of protein structure, dynamics and protein-ligand interactions using NMR spectroscopy /Tengel, Tobias, January 2007 (has links)
Diss. (sammanfattning) Umeå : Univ., 2008. / Härtill 4 uppsatser.
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An analysis of genetic determinants that govern exon definition and alternative splicing of minute virus of mice (MVM) pre-mRNAsGersappe, Anand January 1998 (has links)
Thesis (Ph. D.)--University of Missouri--Columbia, 1998. / Typescript. Vita. Includes bibliographical references (leaves: 215-225). Also available on the Internet.
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Survivin expression after traumatic brain injury potential roles in neuroprotection /Johnson, Erik Andrew. January 2004 (has links)
Thesis (Ph.D.)--University of Florida, 2004. / Typescript. Title from title page of source document. Document formatted into pages; contains 87 pages. Includes Vita. Includes bibliographical references.
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S?ntese e caracteriza??o de TaC e ?xido misto de t?ntalo e cobre nanoestruturados a partir do precursor ox?lico de t?ntalo atrav?s de rea??es g?s-s?lido e s?lido-s?lido a baixa temperatura / Synthesis and characterization of TaC and Mixed Oxide Nanostructured Tantalum and Copper From The Precursor Oxalic Tantalum Through Reactions Gas-Solid and Solid-Solid Low TemperatureLima, Maria Jos? Santos 20 June 2013 (has links)
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Previous issue date: 2013-06-20 / Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior / The research and development of nanostructured materials have been growing significantly in the last years. These materials have properties that were significantly modified as compared to conventional materials due to the extremely small dimensions of the crystallites. The tantalum carbide (TaC) is an extremely hard material that has high hardness, high melting point, high chemical stability, good resistance to chemical attack and thermal shock and excellent resistance to oxidation and corrosion. The Compounds of Tantalum impregnated with copper also have excellent dielectric and magnetic properties. Therefore, this study aimed to obtain TaC and mixed tantalum oxide and nanostructured copper from the precursor of tris (oxalate) hydrate ammonium oxitantalato, through gas-solid reaction and solid-solid respectively at low temperature (1000 ? C) and short reaction time. The materials obtained were characterized by X-ray diffraction (XRD), Rietveld refinement, Scanning Electron Microscopy (SEM), Spectroscopy X-Ray Fluorescence (XRF), infrared spectroscopy (IR), thermogravimetric (TG), thermal analysis (DTA) and BET. Through the XRD analyses and the Reitiveld refinement of the TaC with S = 1.1584, we observed the formation of pure tantalum carbide and cubic structure with average crystallite size on the order of 12.5 nanometers. From the synthesis made of mixed oxide of tantalum and copper were formed two distinct phases: CuTa10O26 and Ta2O5, although the latter has been formed in lesser amounts / A pesquisa e o desenvolvimento de materiais nanoestruturados v?m crescendo significativamente nos ?ltimos anos. Estes materiais apresentam propriedades significativamente modificadas em compara??o ?s dos materiais convencionais, devido ?s dimens?es extremamente reduzidas dos cristalitos. O carbeto de t?ntalo (TaC) ? um material extremamente duro, apresentando elevada dureza, elevado ponto de fus?o, elevada estabilidade qu?mica, boa resist?ncia ao ataque qu?mico e choque t?rmico e excelente resist?ncia ? oxida??o e corros?o. Os compostos de T?ntalo impregnados com Cobre tamb?m possuem excelentes propriedades diel?tricas e magn?ticas. Desta forma este trabalho teve como objetivo a obten??o de TaC e do ?xido misto de t?ntalo e cobre nanoestruturado a partir do precursor tris(oxalato)oxitantalato de am?nio hidratado, atrav?s de rea??o g?s-s?lido e s?lido-s?lido, respectivamente,a baixa temperatura (1000?C) e curto tempo de rea??o. Os materiais obtidos foram caracterizados atrav?s de Difra??o de Raios-X (DRX), Refinamento Rietveld, Microscopia Eletr?nica de Varredura (MEV), Espectroscopia por Fluoresc?ncia de Raios-X (FRX), Espectroscopia de Infravermelho (IV), Termogravim?trica (TG), Analise Termodiferencial (DTA) e BET. Atrav?s das analises de DRX e do refinamento Reitiveld para o TaC com S= 1,1584 observou-se a forma??o do carbeto de t?ntalo puro com estrutura c?bica e tamanho m?dio de cristalitos na ordem de 12,5 nan?metros. Para a s?ntese realizada do ?xido misto de t?ntalo e cobre houve a forma??o de duas fases distintas: CuTa10O26 e Ta2O5, embora esta ?ltima tenha sido formada em menor quantidade
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Reducing Problem Behavior in Children with Autism by Implementing Relaxation Exercise Interventions at the Onset of Precursor BehaviorPadover, Jessica 01 January 2018 (has links)
Many children diagnosed with autism spectrum disorder (ASD) engage in problem behaviors (e.g., aggression and self-injurious behavior) that present safety concerns for both the children themselves and others around them. Previous research has shown that treating precursor behaviors that precede problem behavior may prove to be an alternative, safer method for preventing and treating problem behavior. The present study used a multiple baseline design across subjects (n = 4) to assess the efficacy of relaxation interventions on reducing precursor behavior and preventing problem behavior in children with ASD. Researchers first identified precursor behaviors for all participants through observation. During the intervention phase, all four children were taught deep breathing relaxation exercises. After participants received relaxation training, researchers cued relaxation exercises when precursors occurred, and the frequency of precursor, problem, and on-task behavior was observed. Results showed that problem behavior decreased in all participants following the relaxation intervention. Additionally, for the majority of participants, precursor behavior decreased and on-task behavior increased post-intervention. Implications for practice and future research on interventions that target precursor behaviors are discussed.
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S?ntese de pigmentos cer?micos inorg?nicos nanom?tricos pela rota dos precursores polim?ricos / Nano-Ceramic Inorganic Pigments Synthesis for Route Polymeric PrecursorsSilva, Everl?nia Maria da 08 February 2011 (has links)
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Previous issue date: 2011-02-08 / Considering the constant evolution of technology in growth and the need for production
techniques in the ceramics area to move forward together, we sought in this study, the
research and development of polymeric precursor method to obtain inorganic ceramic
pigments. Method that provides quality to obtain the precursor powders of oxides and
pigments at the same time, offers time and cost advantages, such as reproducibility,
purity and low temperature heat treatment, control of stoichiometry. This work used
chromium nitrate and iron nitrate as precursors. The synthesis is based on the dissolution
of citric acid as a complexing agent, addition of metal oxides, such as ion chromophores;
polymerization with ethylene glycol and doping with titanium oxide. Passing through precalcination,
breakdown, thermal treatments at different temperatures of calcination (700
to 1100 oC), resulting in pigments: green for chromium oxide deposited on TiO2 (CrTiO3)
and orange for iron oxide deposited on TiO2 ( FeTiO3). Noticing an increase of opacity
with increasing temperature. Were performed thermal analysis (TG and ATD) in order
to evaluate its thermodecomposition. The powders were also characterized by techniques
such as XRD, revealing the formation of crystalline phases such as iron titanate (FeTiO3)
and chrome titanate (CrTiO3), SEM, demonstrating formation of rounded particles for
both oxides and Spectroscopy in the UV-Visible Region, verifying the potential variation
and chromaticity os pigments. Thus, the synthesized oxides were within the requirements
to be applied as pigments and shown to be possible to propose its use in ceramic materials / Considerando a evolu??o tecnol?gica em constante crescimento e a necessidade de t?cnicas de produ??o na ?rea de cer?mica que avancem em conjunto, buscou-se neste estudo, a pesquisa e desenvolvimento do m?todo dos precursores polim?ricos para obten??o de pigmentos cer?micos inorg?nicos. M?todo que proporciona qualidade a obten??o dos p?s precursores dos ?xidos pigmentantes e ao mesmo tempo, oferece vantagens de tempo e custo, como: reprodutibilidade, pureza, baixas temperaturas de tratamento t?rmico e controle de estequiometria. Neste trabalho foram utilizados nitrato de cromo e nitrato de ferro, como precursores. A s?ntese foi baseada na dissolu??o do ?cido c?trico, como agente
complexante; adi??o dos ?xidos met?licos, como ?ons crom?foros; polimeriza??o com etileno glicol e dopagem com ?xido de tit?nio. Passando por pr?-calcina??o, desagrega??o, tratamentos t?rmicos em diferentes temperaturas de calcina??o (700 a 1100 oC), resultando em pigmentos: verde para o ?oxido de cromo depositado sobre TiO2 (CrTiO3) e laranja para o ? Oxido de Ferro depositado sobre TiO2 (FeTiO3). Percebendo-se aumento de sua opacidade com o aumento da temperatura. Foram feitas an?lises t?rmicas (TG e ATD), a fim de avaliar sua termo de composi??o. Os p?s foram caracterizados tamb?m
por t?cnicas como DRX, revelando-se a forma??o de fases cristalinas como Titanato de Ferro (FeTiO3) e Titanato de Cromo (CrTiO3); MEV, evidenciando-se forma??o de aglomerados de part?culas ligeiramente hexagonais para ambos os ?oxidos e Espectroscopia na Regi?o do UV-Vis?vel, verificando a varia??o e o potencial de cromaticidade dos pigmentos. Desta forma, os ?xidos sintetizados apresentaram-se dentro dos requisitos necess?rios para serem aplicados como pigmentos e mostra-se poss?vel propor sua utiliza??o em materiais
cer?micos
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