A Esclerose Múltipla (EM) é uma doença autoimune caracterizada por um processo neuroinflamatório com degeneração axonal progressiva. O medicamento Natalizumab (Biogen Idec, NC, USA) representa hoje um dos tratamentos mais promissores para EM. Entretanto, pacientes sob esse tratamento possuem maiores chances de desenvolver Leucoencefalopatia Multifocal Progressiva (LEMP), em decorrência de uma possível reativação do poliomavírus JC (VJC). Além do VJC, o poliomavírus BK (VBK) pode representar uma preocupação adicional para tais pacientes, uma vez que também apresenta capacidade de causar encefalopatias. Apesar do Natalizumab ser uma ótima ferramenta contra a EM, o fato de interagir de alguma maneira com os poliomavírus, em especial o VJC, impede que seja utilizado em larga escala. Dessa forma,o objetivo desse trabalho foi investigar os padrões de excreção e reativação dos VJC e VBK em pacientes com EM durante o tratamento com Natalizumab e comparar aos padrões observados em pacientes que se encontram sob outros tratamentos. Amostras seriadas de sangue e urina foram coletadas e submetidas a testes de biologia molecular para detecção do vírus e caracterização molecular. Foram analisados 97 pacientes em diferentes tempos de acompanhamento. Não foi observada presença de poliomavírus no sangue de nenhum dos indivíduos analisados. Entretanto, 36% excretavam poliomavírus na urina em pelo menos uma das coletas, sendo que 21,7% excretavam VJC, 9,3% excretavam VBK e 5,1% excretavam ambos os poliomavírus. Não foi observada diferença entre as taxas de excreção urinária de poliomavírus entre pacientes que tratavam com Natalizumab (38,9%) e pacientes que sob outros tratamentos (34,5%), sendo que para o Grupo Controle (GC); 21,3%, 8,2% e 4,9% excretavam VJC, VBK e ambos os vírus, respectivamente e para o grupo Grupo Natalizumab (GN) 22,2%, 11,1% e 5,6% excretavam VJC, VBK e ambos os vírus, respectivamente. As análises moleculares da Região Regulatória do VJC revelaram sequências de característica arquetípica. A reconstrução filogenética de sequências do gene VP1 do VJC revelou predominância do genótipo 3 e do genótipo 1 para o VBK. Não foi observada diferença estatística da carga viral do VJC e do VBK entre os dois grupos. Foi detectada uma mutação (E29G) na VP1 de uma paciente que apresentou alta carga viral do VJC. Do grupo GN, 14 apresentaram anticorpos para VJC, sendo que desses 58% apresentou excreção de VJC, 42% não apresentou excreção urinária, interessantemente uma paciente não apresentou anticorpos contra o VJC, mas apresentou excreção de VJC. Pode-se concluir principalmente que a detecção de anticorpos, concomitantemente com a investigação molecular do VJC poderá contribuir para uma melhor determinação da estratificação do risco de desenvolvimento de LEMP em indivíduos com EM sob tratamento com Natalizumab. / Multiple sclerosis (MS) is an autoimmune disease characterized by neuronal inflamatory process with progressive axonal degeneration. The drug Natalizumab (Biogen Idec, NC, USA) is today one of the most promising treatments for MS. However, patients undergoing this treatment have higher chances of developing progressive multifocal leukoencephalopathy (PML), due to a possible reactivation of the polyomavirus JC (VJC). Besides VJC, the BK polyomavirus (VBK) may represent an additional concern for such patients, since it also has ability to cause encephalopathies. Despite Natalizumab be a great tool against MS, the fact that drug some way may interact with polyomavirus, especially VJC, prevents it from being used on a large scale. Thus, aim of this study was to investigate the patterns of excretion and reactivation of VJC and VBK in MS patients during treatment with Natalizumab and compare the patterns observed in patients who are under other treatments. Serial blood samples and urine were collected and submitted to molecular biology tests for virus detection and molecular characterization. Ninety seven patients were analyzed at different follow-up times. There was no polyomavirus DNA in the blood of none subjects analyzed. However, 36% of patients excreted polyomavirus in the urine in at least one of the samples, of those 21.7%, 9.3% and 5.1% excreted VJC, VBK and both polyomavirus, respectively. No difference was observed between the rates of urinary excretion of polyomavirus patients treated with Natalizumab (38.9%) and patients treated with other drugs (34.5%), for the Control Group (GC); 21,3%, 8,2% and 4,9 shed VJC, VBK and both viruses, respectevely and for the Natalizumab Group (GN) 22,2%, 11,1% and 5,6% shed VJC, VBK and both viruses, respectvely. Molecular analysis of the Regulatory Region of VJC revealed sequences similar to the archetype form of VJC. A phylogenetic reconstruction of the VP1 gene sequences revealed VJC predominance of genotype 3 and genotype 1 for VBK. There was no statistical difference in the viral load VJC and VBK between the two groups. It was detected a mutation (E29G) in VP1 of a patient who had a high viral load VJC, however the mutation disappeared after a few months of monitoring. Fourteen patients of GN had antibodies to VJC, and of these 58% had excretion VJC, 42% showed no urinary excretion, interestingly one patient had no antibodies against VJC but showed excretion of VJC. It can be concluded that mostly anti-VJC antibodies detection, concurrently with the VJC molecular research may contribute to a better determination of risk stratification for development of PML in patients with MS undergoing treatment with Natalizumab.

Pre-existing structural elements can have substantial effects on fracture and fault development in younger strata, especially in areas that undergo significant changes in tectonic setting due to reactivation along older structures. This may affect reservoir permeability, yet remain difficult to detect in subsurface data. The focus of this study centers on two styles of pre-existing structures—Paleozoic thrust belts and Late Triassic rift faults in the Devils River Uplift and Maverick Basin, respectively—which affect the development of faults and fractures in Cretaceous strata. Fault and fracture data were characterized in both the outcrop and within a 3D seismic volume. Furthermore, the role of mechanical stratigraphy on fault and fracture style in both localities was examined. The Pecos River Canyon overlies the Paleozoic Ouachita fold-thrust belt with associated EW and SE-NW trending structures. At the surface, faults are expressed in two predominant orientations (N38E and N70E), which may be predictable angles if the pre-existing structures are reactivated by left lateral oblique slip. Detailed investigation of the fracture development related to these faults was conducted in a dry side canyon along the Pecos River. Mechanical layers were identified and mapped in outcrop to highlight fracture intensity variations between the different layers. The porosity and/or the degree of dolomitization are identified as controls on fracture development, with the lowest strength layer and least fractured being highly dolomitized with the largest porosity of any observed layer in outcrop. Southeast of Lewis Canyon, a 3D seismic of the Maverick Basin reveals linear discontinuities, interpreted as low-offset faults, within the Cretaceous Glen Rose through Austin Chalk that appear similar to those observed in outcrop along the Lower Pecos River. These faults are shown to have an increase in intensity within strata above older Late Triassic-age rift faults. It is proposed that the small faults form during reactivation of the rift faults and exhibit differential degrees of intensity and vertical terminations against six identified mechanical boundaries observed within the 3D seismic volume. / text

Knowledge on lithosphere extensional mechanisms has greatly benefited from studies made both at presentday rifted margins and onshore fossil analogues. Nevertheless, the spatial and temporal evolution of the processes leading to continental break-up and oceanic crust formation remains poorly constrained. The Bay of Biscay and Pyrenees is used in this study as a natural laboratory to investigate the formation and reactivation of rift systems. A new offshore-onshore approach is developed and applied to identify, characterize and map the rift domains inherited from the Bay of Biscay opening and partly integrated into the Pyrenean orogen. This mapping reveals the complex architecture of European-Iberian plate boundary resulting from a strongly polyphased evolution. Several rift systems spatially distinct are preserved at different evolutionary stages. An important segmentation partially inherited from the pre-rift structuration controls the formation of the rift systems, an observation that has important implications for regional kinematic restorations. Several steps in compressional deformation can be distinguished and related to the rift inherited architecture. Reactivation is initiated in the exhumed mantle domain. Following the subduction of hyperthinned crust, continental collision processes are controlled by the proximal and necking domains acting as buttresses. These results emphasize the role of pre-rift inheritance for the spatial evolution of rift systems and the importance of the rift-related architecture to unravel the formation of collisional orogen.

A Esclerose Múltipla (EM) é uma doença autoimune caracterizada por um processo neuroinflamatório com degeneração axonal progressiva. O medicamento Natalizumab (Biogen Idec, NC, USA) representa hoje um dos tratamentos mais promissores para EM. Entretanto, pacientes sob esse tratamento possuem maiores chances de desenvolver Leucoencefalopatia Multifocal Progressiva (LEMP), em decorrência de uma possível reativação do poliomavírus JC (VJC). Além do VJC, o poliomavírus BK (VBK) pode representar uma preocupação adicional para tais pacientes, uma vez que também apresenta capacidade de causar encefalopatias. Apesar do Natalizumab ser uma ótima ferramenta contra a EM, o fato de interagir de alguma maneira com os poliomavírus, em especial o VJC, impede que seja utilizado em larga escala. Dessa forma,o objetivo desse trabalho foi investigar os padrões de excreção e reativação dos VJC e VBK em pacientes com EM durante o tratamento com Natalizumab e comparar aos padrões observados em pacientes que se encontram sob outros tratamentos. Amostras seriadas de sangue e urina foram coletadas e submetidas a testes de biologia molecular para detecção do vírus e caracterização molecular. Foram analisados 97 pacientes em diferentes tempos de acompanhamento. Não foi observada presença de poliomavírus no sangue de nenhum dos indivíduos analisados. Entretanto, 36% excretavam poliomavírus na urina em pelo menos uma das coletas, sendo que 21,7% excretavam VJC, 9,3% excretavam VBK e 5,1% excretavam ambos os poliomavírus. Não foi observada diferença entre as taxas de excreção urinária de poliomavírus entre pacientes que tratavam com Natalizumab (38,9%) e pacientes que sob outros tratamentos (34,5%), sendo que para o Grupo Controle (GC); 21,3%, 8,2% e 4,9% excretavam VJC, VBK e ambos os vírus, respectivamente e para o grupo Grupo Natalizumab (GN) 22,2%, 11,1% e 5,6% excretavam VJC, VBK e ambos os vírus, respectivamente. As análises moleculares da Região Regulatória do VJC revelaram sequências de característica arquetípica. A reconstrução filogenética de sequências do gene VP1 do VJC revelou predominância do genótipo 3 e do genótipo 1 para o VBK. Não foi observada diferença estatística da carga viral do VJC e do VBK entre os dois grupos. Foi detectada uma mutação (E29G) na VP1 de uma paciente que apresentou alta carga viral do VJC. Do grupo GN, 14 apresentaram anticorpos para VJC, sendo que desses 58% apresentou excreção de VJC, 42% não apresentou excreção urinária, interessantemente uma paciente não apresentou anticorpos contra o VJC, mas apresentou excreção de VJC. Pode-se concluir principalmente que a detecção de anticorpos, concomitantemente com a investigação molecular do VJC poderá contribuir para uma melhor determinação da estratificação do risco de desenvolvimento de LEMP em indivíduos com EM sob tratamento com Natalizumab. / Multiple sclerosis (MS) is an autoimmune disease characterized by neuronal inflamatory process with progressive axonal degeneration. The drug Natalizumab (Biogen Idec, NC, USA) is today one of the most promising treatments for MS. However, patients undergoing this treatment have higher chances of developing progressive multifocal leukoencephalopathy (PML), due to a possible reactivation of the polyomavirus JC (VJC). Besides VJC, the BK polyomavirus (VBK) may represent an additional concern for such patients, since it also has ability to cause encephalopathies. Despite Natalizumab be a great tool against MS, the fact that drug some way may interact with polyomavirus, especially VJC, prevents it from being used on a large scale. Thus, aim of this study was to investigate the patterns of excretion and reactivation of VJC and VBK in MS patients during treatment with Natalizumab and compare the patterns observed in patients who are under other treatments. Serial blood samples and urine were collected and submitted to molecular biology tests for virus detection and molecular characterization. Ninety seven patients were analyzed at different follow-up times. There was no polyomavirus DNA in the blood of none subjects analyzed. However, 36% of patients excreted polyomavirus in the urine in at least one of the samples, of those 21.7%, 9.3% and 5.1% excreted VJC, VBK and both polyomavirus, respectively. No difference was observed between the rates of urinary excretion of polyomavirus patients treated with Natalizumab (38.9%) and patients treated with other drugs (34.5%), for the Control Group (GC); 21,3%, 8,2% and 4,9 shed VJC, VBK and both viruses, respectevely and for the Natalizumab Group (GN) 22,2%, 11,1% and 5,6% shed VJC, VBK and both viruses, respectvely. Molecular analysis of the Regulatory Region of VJC revealed sequences similar to the archetype form of VJC. A phylogenetic reconstruction of the VP1 gene sequences revealed VJC predominance of genotype 3 and genotype 1 for VBK. There was no statistical difference in the viral load VJC and VBK between the two groups. It was detected a mutation (E29G) in VP1 of a patient who had a high viral load VJC, however the mutation disappeared after a few months of monitoring. Fourteen patients of GN had antibodies to VJC, and of these 58% had excretion VJC, 42% showed no urinary excretion, interestingly one patient had no antibodies against VJC but showed excretion of VJC. It can be concluded that mostly anti-VJC antibodies detection, concurrently with the VJC molecular research may contribute to a better determination of risk stratification for development of PML in patients with MS undergoing treatment with Natalizumab.

Les inhibiteurs des histones désacétylase (HDACi) constituent une classe prometteuse de médicaments anticancéreux. Ils peuvent déclencher la voie apoptotique et sont proposés pour le traitement des désordres hématologiques. Cependant, les HDACi qui ciblent les HDAC de classe II, tel que le vorinostat, sont également des agents réactivateurs potentiels de l’EBV, un virus qui infecte de manière latente plus de 90% de la population adulte dans le monde et est associée à de nombreux lymphomes de type B. L’étude de la commutation entre le cycle latent et le cycle lytique de l’EBV est essentielle pour appréhender l’impact des HDACi lors du!traitement des lymphomes B associés à l’EBV (risque du relargage de virions en grande quantité lors des traitements chimio thérapeutiques).Notre étude a porté sur l'effet de vorinostat (25 μM pendant 48h) sur des cellules tumorales B infectées par l’EBV : trois lignées de lymphomes de burkitt (BL2B95.8, BL41B95.8 et P3HR1), trois lignées lymphoblastoides (1602, PRI et RUD) et la lignée B95.8 de marmouset en cycle lytique de l’EBV (contrôle positif). Nous avons mis en évidence que le vorinostat peut induire la réactivation de l’EBV (P3HR1 et B95.8) ou à l’apoptose (BL41B95.8, BL2B95.8, 1602, PRI et RUD) avec une inhibition mutuelle de ces deux processus. Au niveau moléculaire, nous avons pu montrer que le vorinostat active constitutivement et simultanément le facteur de transcription initiateur de la réactivation MEF2D (par déphosphorylation) et la MAP kinase pro-apototique p38 (par phosphorylation) suite à la diminution de l’expression de la MAP kinase phosphatase (MPK1) dont p38 est un substrat. Le pré-traitement avec un inhibiteur de p38 (SB203580) a mis en évidence que cette MAP kinase est à la fois impliquée dans les processus de réactivation de l’EBV et d’’apoptose. Cependant, les lignées cellulaires pour lesquelles l'activation de p38 augmente fortement lors du traitement par le vorinostat, entrent directement en apoptose, sans qu’il puisse y avoir réactivation de l’EBV.Nos résultats suggèrent que le niveau d’activation de la MAP kinase p38 permet de réguler la balance réactivation/apoptose des cellules B infectées par l’EBV lorsqu’elles sont soumises à un agent inducteur de la réactivation, en particulier dans le cas de cellules de lymphomes B traitées par le vorinostat. Ils posent la question de l’utilisation des HDACi lors du traitement des lymphomes associés à l'EBV, avec le risque d’une réactivation virale selon le niveau d’activation intracellulaire de p38 et la nécessité d’utiliser simultanément un anti-viral tel que le ganciclovir. / Histone deacetylase inhibitors (HDAC) are a promising class of anticancer drugs. They can trigger the apoptotic pathway and are available for treatment of blood disorders. However, the HDACi that target HDAC class II, as vorinostat, also are potential reactivators agents of EBV, a virus that infects latently over 90% of the adult population worldwide and is associated with many type B lymphomas the study of switching between the latent cycle and the lytic cycle of EBV is essential to understand the impact of HDACi when treating B-cell lymphoma associated with EBV (salting risk virions in large quantities during the chemotherapeutic treatment).Our study focused on the effect of vorinostat (25 .mu.M for 48) on tumor B cells infected with EBV: three lines of Burkitt lymphoma (BL2B95.8, BL41B95.8 and P3HR1), three lymphoblastoid cell lines (1602 PRI and RUD) and B95.8 marmoset line in the lytic cycle of the EBV (positive control). We have demonstrated that vorinostat can induce EBV reactivation (P3HR1 and B95.8) or apoptosis (BL41B95.8, BL2B95.8, 1602, PRI and RUD) with a mutual inhibition of these two process. At the molecular level, we have shown that the active vorinostat constitutively and simultaneously initiating transcription factor reactivation MEF2D (by dephosphorylation) and MAP kinase p38 pro-apototique (phosphorylation) following the reduction in the expression of the MAP kinase phosphatase (MPK1) p38 which is a substrate. The pre-treatment with a p38 inhibitor (SB203580) showed that MAP kinase is both involved in the process of EBV reactivation and apoptosis. However, cell lines where p38 activation greatly increases during treatment with vorinostat, come directly into apoptosis, without there may EBV reactivation.Our results suggest that the level of activation of p38 MAP kinase helps regulate the balance reactivation / apoptosis of B cell EBV infected when exposed to an inducing agent for the reactivation, in particular in the case of cells B lymphoma treated with vorinostat. They raise the question of the use of HDACi in the treatment of lymphomas associated with EBV, with the risk of viral reactivation by level of intracellular activation of p38 and the need to simultaneously use an antiviral such as ganciclovir.

Les hydrogénases sont des métalloenzymes qui catalysent la conversion réversible du dihydrogène en protons et en électrons. Durant ma thèse, je me suis focalisé sur certains aspects du fonctionnement de l’hydrogénase à [NiFe] hétérodimérique de Desulfovibrio fructosovorans. Nous avons montré que contrairement au mécanisme communément admis d’inactivation aérobie de l’enzyme, l’O2 n’est pas incorporé en tant que ligand au niveau du site actif mais agit plutôt comme un simple oxydant. Ce résultat remet en question le mécanisme proposé pour expliquer la tolérance naturelle à l’O2 de certaines hydrogénases. L’analyse à l’aide d’un modèle cinétique des voltamogrammes cycliques complexes obtenus avec 16 variants a montré que les vitesses d’(in)activation en conditions anaérobies peuvent être accélérées de plusieurs ordres de grandeurs. Nous avons aussi montré et expliqué la corrélation entre ces vitesses et la tolérance à l’O2. Nous avons étudié une série de mutants qui produisent H2 beaucoup plus lentement que l’enzyme sauvage. Nous avons montré que la vitesse de cette réaction est déterminée par celle de l’étape de diffusion du H2, qui est lente dans les mutants. Finalement, nous nous sommes intéressés à une thréonine appartenant à la voie putative de transfert des protons. Nous avons démontré que cet acide aminé est effectivement impliqué dans le transport des protons. Il joue aussi un rôle crucial dans la stabilisation des intermédiaires formés au cours du cycle catalytique et probablement dans la détermination des vitesses de transfert électronique et de diffusion à travers le canal. / Hydrogenases are metalloenzymes which catalyse the reversible conversion of dihydrogen into protons and electrons. In my work, I focused on some aspects of the catalytic mechanism of the heterodimeric NiFe hydrogenase from Desulfovibrio fructosovorans. We demonstrated that, contrary to the commonly accepted mechanism of aerobic inactivation, the attacking O2 is not incorporated as an active site ligand but rather acts as an electron acceptor. This finding calls for a re-examination of the mechanism for O2 tolerance of the natural O2 tolerant NiFe hydrogenases. We also described a simple analytical model that we used to analyse the complex voltammetric signals of 16 mutants obtained by substituting an amino acid near the active site. We demonstrated that this substitution can accelerate anaerobic inactivation and reactivation by up to three orders of magnitude. We also demonstrated and explained the correlation between these rates and O2-tolerance. We studied mutants whose H2-production activity is impaired. We found that the rate limiting step of this reaction is the diffusion of hydrogen out of the enzyme, through the hydrophobic channel. Finally, we focused on a threonine belonging to the putative proton transfer pathway. We demonstrated that this amino acid is indeed implicated in proton transport. It may also play a crucial role in the stabilization of intermediates formed during the catalytic cycle, and probably also in determining the rate of electron transfer and diffusion along the gas channel.

Recent geodynamic modeling studies suggest that the geometry of structural landforms in the Ouachita Mountains (OM) has been influenced by the reactivation of a weak scar in the mantle-lithosphere during intracontinental orogenesis. As deformation on one-plate planets such as Mars can be considered intracontinental, and impact cratering deeply scarred the Martian lithosphere, we hypothesize that structural geometries on Mars may also reflect heterogenous networks of lithospheric scarring. To investigate this hypothesis, we model the pre-erosional fold structure of the Maumelle Chaotic Zone in the OM to compare fault and fold geometries with that of the seismically-imaged mantle-lithosphere scar. We then numerically model deformation within the Martian crust and mantle-lithosphere in the presence of scarring to understand tectonic reactivation on one-plate planets. We find that structural geometries in the OM are consistent with a subsurface scar, and tectonic landforms on the surface of Mars may indeed reflect deformation generated by a network of lithospheric heterogeneity.

No description available.

No description available.

Yes / KSHV is the causative agent of commonly fatal malignancies of immuno-compromised individuals, including primary effusion lymphoma (PEL) and Kaposi's sarcoma (KS). A hallmark of all herpesviruses is their biphasic lifecycle – viral latency and the productive lytic cycle, and it is well established that reactivation of the KSHV lytic cycle is associated with KS pathogenesis. Therefore, a thorough appreciation of the mechanisms that govern reactivation is required to better understand disease progression. The viral protein, replication and transcription activator (RTA), is the KSHV lytic switch protein due to its ability to drive the expression of various lytic genes, leading to reactivation of the entire lytic cycle. While the mechanisms for activating lytic gene expression have received much attention, how RTA impacts on cellular function is less well understood. To address this, we developed a cell line with doxycycline-inducible RTA expression and applied SILAC-based quantitative proteomics. Using this methodology, we have identified a novel cellular protein (AT-rich interacting domain containing 3B, ARID3B) whose expression was enhanced by RTA and that relocalised to replication compartments upon lytic reactivation. We also show that siRNA knockdown or overexpression of ARID3B led to an enhancement or inhibition of lytic reactivation, respectively. Furthermore, DNA affinity and chromatin immunoprecipitation assays demonstrated that ARID3B specifically interacts with A/T-rich elements in the KSHV origin of lytic replication (oriLyt), and this was dependent on lytic cycle reactivation. Therefore, we have identified a novel cellular protein whose expression is enhanced by KSHV RTA with the ability to inhibit KSHV reactivation.