The conservation status of the widely-distributed whale shark Rhincodon typus is presently listed as 'Indeterminate - Data Deficient'. One of the main hindrances to obtaining biological data on whale sharks that is relevant to determining its 'conservation status' is that this species has rarely been recorded as occurring in sufficient numbers to obtain quantitative data. However, R. typus does form aggregations at Ningaloo Marine Park (NMP), Western Australia, annually between March and June. This has enabled studies to be made of aspects of the biology of R. typus and of the possible impacts of the ecotourism industry on this species. Using a position provided on vessels involved with the whale shark ecotourism industry at NMP, R. typus was observed on 360 separate occasions in 1995, 1996 and 1997, and it was possible to sex 90.3% of these sharks. The majority of the sexed sharks (84.6%) were male and ranged in length from 4 to 12 m, with a mean of 7.4 m, while the females ranged in length from 4.5 to 8.5 m, with a mean of 6.2 m. The size and degree of abrasion of the claspers was used as an indicator of whether or not a male shark had mated. Using such criteria, it was estimated that male whale sharks start to mature at ca 8 m and that ca 50% are mature by the time they reach 8.6m. Observations suggested that R. typus feeds by using both suction and flow-through mechanisms. The prey that were observed being ingested included coral spawn, tropical krill, mysids and small jellyfish. The contents of a faecal sample contained parts of the exoskeleton of copepods and the scales of small fishes. The degree of mouth distension, which is assumed to be related to feeding activity, was low during most observation periods. Photographs of the scars and natural patterning on the skin of individual sharks were used to construct a photographic library for subsequent identification of these sharks. The features used for identifying individual sharks were chosen because they were considered likely to remain for a protracted period. The Whale Shark Photo -identification Library that was produced provides details on the characteristic features of 52 R. typus that were present at NMP. Six individuals were recorded at NMP in both 1995 and 1996, four in both 1996 and 1997, and one in both 1995 and 1997. No identified whale sharks were recorded in all three years. Rhincodon typus was distributed widely throughout NMP, with most boat and aerial sightings lying within 1 - 2 Ism of the reef crest between Tantabiddi and Turquoise Bay. Rhincodon typus was typically sighted in water depths of 10 to 30 m. The sharks were predominantly travelling parallel to Ningaloo Reef, with significantly more moving in a northward than southward direction. Acoustic tracking of R. typus in 1997 suggested that this species remains within NMP for extended periods and is at the surface for ca 17% of daylight hours. The number and species of fauna observed to be associated with R. typus were recorded, and a new species of copepod, Pandarus sp. nov., which lives on the skin of R. typus has been described. Golden trevally (Gnathanodon speciosus), miscellaneous trevally (Carangid sp.), remora (Remora sp.) and slender suckerfish (Echeneis naucrates) were common. The prevalence of Pandarus sp. nov. was inversely proportional to the number of Remora sp. and E. mucrates in 1996, while the opposite was true in 1997, suggesting that Pandarus sp. nov. were preyed on by these diskfish. Rhincodon typus is the basis of the ecotourism industry that operates within NMP each year. While there was considerable variation in the number of tour vessels searching for whale sharks at NMP each year, the greatest mean number of vessels operating per week in successive whale shark seasons were 6.7 during Week 8 (April 19 - 25) of 1995, 6.1 during Week 7 (April 12 - 18) of 1996 and 6.9 during Week 8 (April 19 - 25) of 1997. The greatest mean numbers of whale sharks sighted per week in each year were 5.1 during Week 14 (May 31 - June 6) of 1995,4.2 during Week 6 (April 5 - 11) of 1996 and 4.1 during Week 8 (April 19 - 25) of 1997. Tourists, who were permitted to swim alongside R. tyus, interacted with sharks for a mean period of 19.3 rnin in 1995, 14.2 min in 1996 and 9.5 rnin in 1997. The reduction in the duration of interaction in three successive years suggests that, over time, R. typus may have become slightly less tolerant of the ecotourism industry at NMP. The mean minimum distance between vessel and shark during each interaction was 20.7 m in 1995, 21.3 m in 1996 and 31.0 m in 1997. The mean minimum distance between tourist and shark during each interaction was 1.5 m in 1995, 2.05 m in 1996, and 2.1 m in 1997. The mean minimum distance of vessel and tourist from R. typus during each individual interaction decreased as the duration of the interaction increased. Therefore, both R. typus and this industry must be carefully monitored to ensure that the impacts of humans are kept to a minimum and thereby ensure that whale sharks return to NMP each year. An ethology of whale shark behaviours, which included banking, porpoising, diving and eye-rolling, was produced in an attempt to determine whether there is evidence that the ecotourism industry has a negative impact on R. opus at NMP. The frequency of behavioural change was greatest in the first 0 - 5 min of an observation. Eye-rolling by R. typus was recorded as a reaction to flash-photography, while banking was often recorded when SCUBA was used and/or tourists swam beneath the head of the shark. The swimming speed of R. typus at NMP was rarely too fast for tourists to maintain proximity to the sharks. Several sharks possessed both recent and healed scars, which were probably inflicted by vessel contact. The recent wounds indicate that vessels had caused injuries to R. typus within NMP. These individuals tended to display a higher frequency of avoidance behaviours and reduced interaction times. Recommendations are provided to the Western Australian Department of Conservation and Land Management which are aimed at reducing the potential deleterious effects of the ecotourism industry on the whale sharks at NMP.

In a recent global study of whale shark population genetics, aggregations were found to belong to either the Indo-Pacific or Atlantic population. This overview included an aggregation found within the Red Sea near Al Lith, Saudi Arabia, however the Mafia Island, Tanzania, aggregation was not part of the study. Both aggregations have unique aspects with the Saudi Arabian individuals showing sexual parity with no segregation, while recent acoustic results have revealed cryptic residency at Mafia Island. Genetic analysis using 11 microsatellite markers was performed on whale sharks from both locations. A combination of primers sourced from previous studies and newly designed primers were used to compare both aggregations and the individuals within. Samples were collected in the Red Sea for 5 seasons spanning 6 years, and for 2 seasons in Tanzania. Analysis with STRUCTURE showed a lack of significant genetic differences between the two aggregations, confirming that whale sharks in Tanzania are part of the Indo-Pacific population. Kinship analysis using COLONY found two potential pairs of full siblings in Tanzania. One pair had a high probability (.993) of being a full sibling dyad while the other had a lower probability (.357). There were no sibling pairs identified from the Red Sea aggregation. Genetic diversity was investigated using allelic richness over the 6 seasons at Al Lith, with values showing no significant change. This is in contrast to results that showed a decline in genetic diversity at Western Australia’s Ningaloo reef. These differences, however, only highlight the need for genetic diversity studies over longer time periods and at other aggregations within the Indo-Pacific.

In 1938 Dr. Eugene Gudger concluded of the Red Sea that "whale sharks must surely abound in this region." Seventy years later, multi-method research began on a whale shark (Rhincodon typus) aggregation at Shib Habil, a reef near Al Lith, Saudi Arabia. However, in 2017 and 2018, a dramatic decline in encounters at this site drew questions about the aggregation's future and overall whale shark population trends in the region. In this dissertation, I describe and discuss the two-year decline in encounters and show that neither remotely sensed sea surface temperature nor chlorophyll-a concentrations were significantly different in seasons with or without sharks. Citizen science-based photo identification was used to characterize the northern Red Sea population, the Red Sea population as a whole, show limited crossover within the basin, and connections with another aggregation in Djibouti. Scarring rates within the Red Sea are compared to recent global studies, and the Red Sea uniquely had no predator bites observed, suggesting boat collisions are likely the leading cause of major scars. Finally, building upon previous genetic work comparing Red Sea and Tanzanian sharks using microsatellites, the mitochondrial control region was sequenced, and two global haplotype networks were produced and compared to each other and previous work. The stability of genetic diversity within the Shib Habil aggregation is compared to declines previously measured in Australia. As tourism develops along the northern Saudi Arabian coast and citizen science increases in the Red Sea, population dynamics within the region could be better understood. The genetic connectivity of Red Sea whale sharks to the Indo-Pacific population exemplifies the need for continued collaborative research beyond local aggregations and multinational conservation measures.

Molecular tools, such as sequencing of the mitochondrial DNA Control Region (CR) and genotyping of highly variable nuclear microsatellites were applied to survey the genetic diversity, population structure and phylogeography of three shark species: the whale shark, Rhincodon typus; the bull shark, Carcharhinus leucas; and the nurse shark, Ginglymostoma cirratum. The highly migratory and pelagic whale shark exhibited the largest length variation yet reported for an elasmobranch CR (1143–1332 bp), and high haplotype (h = 0.974 ± 0.008) and nucleotide diversities(π = 0.011 ± 0.006). No geographical clustering of lineages was observed and the most common haplotype was distributed globally. The haplotype frequency, however, differed between the Atlantic and Indo-Pacific populations(AMOVA, ΦST = 0.107, P < 0.001). For the bull shark, both mtDNA CR and five microsatellite loci were surveyed for animals from the Gulf of Mexico, the East coast of Florida and the Brazilian coast. Strong genetic structure was observed between theBrazilian and all northern populations for the CR (ΦST > 0.8, P < 0.001), but not for the nuclear microsatellite. The results here presented are congruent with restricted maternal gene flow between populations as a consequence of female nursery site fidelity. The philopatric tendencies as well as the relatively low levels of genetic diversity raises concerns about the conservation of this species. Finally, for the western Atlantic nurse sharks the genetic diversity estimated in a 1,166 bp fragment of the mtDNA comprising partial cytochrome b, tRNAPro, tRNAThr, and partial CR was the second smallest ever recorded for sharks (h = 0.45 ± 0.04; π = 0.0004 ± 0.0004). The data indicated moderate but significant genetic structure with the mtDNA marker (ΦST = 0.22, P<0.05) and no substantial structure in eight microsatellite loci analyzed. A population bottleneck as recent as the lower Pleistocene might have eroded the nurse shark genetic diversity and also contributed to its relatively lower population structure. The data also indicated that dispersal rather than vicariance better explains the Atlantic distribution of nurse shark, and that the Pacific nurse shark might be a cryptic sister species to Ginglymostoma cirratum.

Submitted by (edna.saturno@ufrpe.br) on 2017-02-08T15:28:37Z No. of bitstreams: 1 Bruno Cesar Luz Macena Rocha.pdf: 2783358 bytes, checksum: 0c7cc3375d48be56cad1fcf79ba55824 (MD5) / Made available in DSpace on 2017-02-08T15:28:37Z (GMT). No. of bitstreams: 1 Bruno Cesar Luz Macena Rocha.pdf: 2783358 bytes, checksum: 0c7cc3375d48be56cad1fcf79ba55824 (MD5) Previous issue date: 2010-06-17 / Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPq / Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPq / In Saint Peter and Saint Paul archipelago (SPSPA), located at mid-Atlantic ridge, near to Equator line, population aspects of whale sharks was analized through in situ observation on distribution, seasonality, different behavior, and photo-identification. The movements of whale sharks was tracked using two models of satellite tag: SAT (Satellite Argos-linked transmitter) and PSAT (Pop up satellite archival transmitting tag) in one male (TB-01; 4.8 m) and one female (TB-02; 8.5 m),respectively. Whale shark occur in SPSP adjacencies yearround,although, are more abundant in the first semester, mainly, in February, March, and June. The annual record mean was 10.8 year-1 between 2000 and 2009. The size ranges from 1.8 to 14.0 m with mean± s.d. equal to 7.4± 2.4 m and the majority (62.9%) of whale sharks smaller than 9.0 m, under the estimated size at first maturation. Data received from Argos Satellite system indicate that the whale shark swam away from archipelago heading west. Both sharks spent the major of the time at surface, and the TB-02 dove into bathypelagic zone, attaining the maximum depth of 1,976 m. This was the first initiative to understand behavioral and population dynamics aspects of the whale sharks as well as the movement in Brazil and Equatorial Atlantic from SPSPA and will continue in the hope of building better conservation strategies. / No Arquipélago de São Pedro e São Paulo (ASPSP), localizado na dorsal meso-Atlântica, próximo à linha do Equador, foram analisados aspectos da população do tubarão baleia por meio de observação in situ. Informações sobre a distribuição e sazonalidade de ocorrência, diferentes comportamentos foram coletados e, quando possível, os espécimes foram fotografados para posterior individualização. Para elucidação do deslocamento do tubarão-baleia, a partir do ASPSP, foram utilizados dois modelos de transmissores via satélite, o SAT (Satellite Argos-linked tag) e o PSAT (Pop up satellite archival transmitting tag) em um macho (TB-01) e uma fêmea (TB-02) de 4,8 e 8,5 m, respectivamente. Os tubarões-baleia visitam o arquipélago durante o ano inteiro, entretanto, o primeiro semestre possui uma frequência mais elevada, principalmente nos meses de fevereiro, março e junho. A média anual de registros foi 10,8 ano-1 entre 2000 e 2009. Os comprimentos variaram entre 1,8 e 14,0 m com média± d.p. igual a 7,4± 2,4 m, com a maior parte (62,9%) dos tubarõesbaleia com comprimento abaixo do tamanho estimado para primeira maturação. Os dados dos transmissores recebidos pelo Sistema Argos de satélites indicaram que os tubarões se afastaram do ASPSP, logo após a marcação, em direção oeste. Ambos os tubarões permaneceram a maior parte do tempo na superfície e o TB-02 realizou mergulhos batipelágicos alcançando a profundidade máxima de 1.976 m. Esta foi a primeira iniciativa para se compreender aspectos populacionais e comportamentais, bem como da movimentação de tubarões-baleia no Brasil e no Atlântico Equatorial a partir do ASPSP e terá continuidade na expectativa de construir de estratégias espaciais de conservação.