Thesis (Ph. D.)--University of Chicago. / Reprinted from the Botanical gazette, v. 40, p. 12-48, July, 1905. Also issued as Contributions from the Hull botanical laboratory. LXXIV. Bibliography: p. 43-47.

Thesis (Ph. D.)--University of Chicago. / Reprinted from the Botanical gazette, v. 40, p. 12-48, July, 1905. Also issued as Contributions from the Hull botanical laboratory. LXXIV. Bibliography: p. 43-47.

Thesis (doctoral)--Helsinki University of Technology, 2007. / Includes bibliographical references. Also available on the World Wide Web.

The endosomal trafficking system is a network of highly coordinated cellular pathways that control the growth and function of cells. The coordination of secretion and endocytosis in cells is one of the primary drivers of polarized growth, where new plasma membrane and cell wall components are deposited at the growing apex. In plants, one of the cell types exhibiting polarized growth are the root hairs. Root hairs are regulated extensions of epidermal cells called trichoblasts and are essential for anchorage, absorption of water and nutrients, and plant-microbe interactions. In this thesis, I characterize a previously undescribed protein involved in retromer function and endosomal trafficking pathways that regulate tip growth in root hairs of Arabidopsis thaliana. The large retromer complex functions in recycling receptors in endosomal trafficking pathways essential for diverse developmental programs including cell polarity, programmed cell death, and shoot gravitropism in the model plant, Arabidopsis thaliana. I have characterized VPS26C, a novel member of the large retromer complex, that is essential in maintaining root hair growth in Arabidopsis. We used Bimolecular Fluorescence Complementation (BiFC) analysis to demonstrate thatVPS26C interacts with previously characterized core retromer subunits VPS35A and VPS29. Genetic analysis also indicates that vps26c suppresses the root hair growth and cell wall organization phenotypes of a null mutant of the SNARE VTI13 that localizes to early endosomes and the vacuole membrane, indicating a crosstalk between the VPS26C-retromer and VTI13-dependent vesicular trafficking pathways. Phylogenetic analysis was used to show that VPS26C genes are present in most angiosperms but appear to be absent in monocot genomes. Moreover, using a genetic complementation assay, we have demonstrated that VPS26C shares deep conservation of biochemical function with its human ortholog (DSCR3/VPS26C). We also used an affinity purification-based proteomic analysis to identify proteins associated with VTI13 in young seedlings. Preliminary results suggest that a number of proteins linked to cell plate organization in plants are associated with the VTI13 proteome, emphasizing the potential role of this pathway in new cell wall biosynthesis/organization. Additionally, we have identified endoplasmic reticulum (ER)-body proteins, involved in plant defense response pathways, suggesting that either the VTI13 endosomal trafficking pathway is functioning in plant defense responses, or the ER-body proteins have additional independent function(s) in Arabidopsis roots that depend on VTI13. In summary, I have described a novel retromer complex essential for polarized growth in Arabidopsis. VPS26C is an ancient gene and shares sequence and functional homology between human and Arabidopsis. vps26c is a genetic suppressor of the vti13- dependent root hair growth and cell wall organization pathways. Proteomic analysis of VTI13 endosomes in young seedlings suggests that a number of proteins associated with cell plate formation are associated with VTI13 compartments, supporting the genetic analysis described here and serves as a starting point to further describe the role of this pathway in controlling polarized growth in plants.

Myosin proteins function as molecular motors that drive the ATP-dependent movement of cellular components along actin filaments. Vascular plants encode two different types of myosin, referred to as class VIII and class XI. Although class XI myosins have been suggested to function in organelle movement and cytoplasmic streaming, little is known about their cellular function in detail. The Arabidopsis genome encodes 13 class XI myosin genes. The reasons for the relatively large number of myosin XI isoforms present within a single plant species are unknown. To investigate the function of these gene products in the cell, we determined the spatial and temporal gene expression patterns by constructing promoter-reporter plants. Myosin genes are expressed in a variety of tissues with substantial overlap between family members. To study the biological function more intensively, homozygous T-DNA insertion lines were isolated for all 13 genes. Interestingly, five mutants showed phenotypes related to root hairs. mya2, xi-b, and xi-k showed shorter root hairs than in wild type while xi-h and mya1 produced a higher density of root hairs on the epidermis. MYA1 and XI-K are the most similar isoforms among the 13 myosins and their double mutant showed an additive phenotype with extremely short root hairs suggesting that these two myosins have partially redundant functions. Interestingly organelle movements, especially those of peroxisomes, were reduced in mya1 xi-k. Tip growth is the key growth mechanism in root hairs and pollen tubes. Many kinds of vesicles are trafficking toward (or backward from) the apical dome of root hairs to supply membrane and cell wall material as well as energy for growing tips. These movements along the shank of the hair occurred with velocities around 2 to 3 μm/s for Arabidopsis thaliana. In xi-k mutants, root hairs grew more slowly and terminated sooner than in wild type. Interestingly, this reduction of growth rate was correlated with a fluctuation of YFP-RAbA4b accumulation at the tip of growing root hairs. Other markers, including PI4P lipid and ER, as well as calcium and actin dynamics did not show significant differences. A YFP-XI-K construct driven by its native promoter could rescue the mutant phenotype and revealed accumulation of this myosin in the tip of growing root hairs. The distribution of YFP-XI-K in the root hair tip partially overlapped with CFP-RHD4-labeled vesicles at the subapex and YFP-RabA4b vesicles at the apex of root hairs, suggesting that myosin XI-K might be involved in the accumulation of unidentified vesicles in the tip of growing root hairs. Characterization of two mutants that showed ectopic root hair growth in the epidermis, resulting in a higher density of root hairs than wild type, mya1 and xi-h, were initiated with two analyses. At first, staining pattern of promoter-reporter constructs of three key transcription factors, WER, EGL3, and GL2 were observed in mya1. Although variation in individual samples was too large to conclude, GL2 staining patterns in mya1 occasionally were unorganized. Increasing sample population and detail study is necessary. Secondly, effects of phosphate deficiency were observed with the mya1 and the xi-h in series of phosphate concentrations ranging from 1μM to 300μM. The xi-h mutant showed insensitivity on root hair production upon phosphate deficiency, suggesting a potential function of XI-H in the response to phosphate deficiency. Confirmation of these results and further study of the MYA1 and the XI-H is essential. In summary, this study established a systematic approach to investigate the biological function of class XI myosins in plant development and significantly increases our understanding of the function of XI-K myosin in root hair tip growth.

Pflanzenwurzeln reagieren auf Phosphat- oder Eisenmangel mit einer vermehrten Wurzelhaarbildung, was eine Vergrößerung der absorptiven Oberfläche bewirkt. Die erhöhte Anzahl an Wurzelhaaren wird dabei auf verschiedene Weise gebildet. Phosphat-defiziente Arabidopsis-Pflanzen erhöhen die Anzahl an Wurzelhaarzellen, während sich unter Eisenmangel verzweigte Wurzelhaare entwickeln. Die Fe- und P-Homöostase wird durch systemische und lokale Signalwege reguliert. Der Einfluss dieser Signale auf die Fe- bzw. Psensitive Wurzelhaarentwicklung wurde mithilfe von split-root-Experimenten untersucht, die mit einem systemischen Mangel- oder Suffizienzsignal kombiniert wurden. Die Verzweigung der Wurzelhaare Fe-defizienter Pflanzen wurde durch ein dominantes Suffizienzsignal reprimiert, unabhängig von seiner lokalen oder systemischen Herkunft. Die Erhöhung der Wurzelhaarzahl bei P-Mangelpflanzen wurde durch ein dominantes Defizienzsignal induziert. Um herauszufinden, welches Entwicklungsstadium von dem jeweiligen Nährstoff beeinflusst wird, wurden Mutanten mit Defekten in frühen und späten Wurzelhaarentwicklungsstadien untersucht. Mutanten mit beeiträchtigter Wurzelhaar-Spezifikation wichen in ihrer Wurzelhaarzahl und –lokalisation vom Wildtyp ab, zeigten aber eine Fe- oder P-sensitive Veränderung. Die Gene aus frühen Entwicklungsstadien sind demnach essentiell für die Reaktion, sind aber nicht das direkte Ziel der Mangelsignale. Frühe Zelleigenschaften in der meristematischen Region waren durch die Eisen- oder Phosphatverfügbarkeit nicht verändert, was darauf hindeutet, dass die Wurzelhaarbildung erst in einem späteren Entwicklungsstadium durch die Nährstoffe beeinflusst wird. Mutanten mit Defekten in späteren Entwicklungsstadien zeigten kurze oder verformte Wurzelhaare unabhängig von der Nährstoffversorgung. Das Fe- oder P-Signal mündet also vor der Wirkung dieser Komponenten in die Wurzelhaarbildung ein. Das heisst, nachdem die korrekte Wurzelhaar-Position und -Anzahl in Anpassung an das Fe- oder P-Angebot festgelegt wurde, werden die Wurzelhaare unter allen Wachstumsbedingungen von einer gemeinsamen Maschinerie elongiert. Zur Identifikation potentiell neuer Gene, die die Wurzelhaarbildung in Anpassung an P-Mangel regulieren, wurden sechs Mutanten isoliert, die keine Wurzelhaare bei P-Mangel bilden, aber nach dem Transfer auf P-suffizientes Medium nicht beeinträchtigt waren. Eine dieser Mutanten, per2, wurde phänotypisch und genetisch charakterisiert. Neben der veränderten Wurzelhaarbildung zeigte per2 auch eine konstitutiv erhöhte Lateralwurzelbildung und eine erhöhte Anthozyan-Akkumulation bei P-Mangel. Laut epistatischen Analysen gehört die per2 Mutante zu einem Signalweg, der unabhängig von frühen Zellspezifikationsgenen wirkt. Der per2-Locus wurde innerhalb eines 87,5 kpb großen Abschnittes auf dem oberen Arm von Chromosom 3 kartiert. Mutanten die einen per2-ähnlichen Phänotyp zeigen, wurden bisher nicht beschrieben. Daher handelt es sich bei PER2 möglicherweise um ein neues Gen, das die Wurzelhaarbildung bei Phosphatmangel reguliert und weitere P-Mangelreaktionen beeinflusst. / Limitation of immobile nutrients, such as iron (Fe) and phosphate (P), induces the development of additional root hairs that lead to an increase of the absorptive surface of the root. The increased root hair frequency of Fe- and P-deficient Arabidopsis was realized by different strategies. Phosphate-deficient plants increased the number of root hairs while in Festarved plants root hairs were branched. The Fe and P starvation responses in plants are thought to be regulated by a systemic signaling mechanism that communicates the nutrient status of the shoot to the root and by a local signaling mechanism that perceives the Fe or P availability in the soil. The influence of local and systemic signals on the respective root hair phenotype was investigated in split-root experiments. This treatment was combined with either a nutrient-sufficient or -deficient shoot. The root hair branching typical of Fe-deficient plants only occured in the presence of both a local and a systemic Fe-deficiency signal. As a consequence, an Fe sufficiency signal acted dominantly to any deficiency signal, independent of its origin. The increased number of root hairs in P-deficient plants, conversely, was activated through either a local or a systemic P deficiency signal. Thus, the P deficiency signal acted dominantly to any sufficiency signal. To determine, which stage of root hair development was influenced by iron and phosphate, mutants with defects in different stages of root hair development were investigated for their root hair phenotype. Mutants affected in the early stages of root hair development, such as specification, displayed marked changes in the number and localization of root hairs. However, the nutritional signal was perceived and translated in this group of mutants. This indicates that the specification genes are involved in the nutrient-sensitive root hair formation, but may not be the direct targets. Early cell characteristics of root hairs in the late meristematic region of the root, like the expression of marker genes, were unaltered in plants adapted to Fe or P deficiency. This suggested the nutritional signal modulates root hair development after these characteristics have been established. Mutants with defects in the later stages of root hair development, such as root hair elongation, showed short or deformed root hairs in the proper position and frequency and were, thus, impaired independent of the Fe or P supply. Thus, the nutritional signal may enter the root hair developmental pathway around the stage of root hair initiation and bulge formation. Finally, six mutants were screened that did not form root hairs under P deficiency but developed normal, when the plants were transferred to P-sufficient medium. One of these mutants, per2 (phosphate deficiency root hair defective2), was characterized phenotypically and genetically. In addition to the impaired root hair growth, the per2 mutant displayed a constitutively high lateral root number and accumulated an increased amount of anthocyanins under P starvation. Epistatic analysis revealed that per2 action is independent of early cell specification genes. The per2 mutation was mapped to a 87.6 kbp region on the upper arm of chromosome 3 containing 19 genes. The per2 phenotype has not been described before. Thus, PER2 is a potential new gene involved in root hair development under phosphate deficiency.

A acidez do solo é um dos principais fatores limitantes à produção vegetal. A toxicidade por alumínio, que ocorre apenas a pH baixo, tem sido extensamente investigada, enquanto o estresse causado pelo pH baixo tem recebido pouca atenção. Os estudos nesta área quase sempre presumem efeitos aditivos, e portanto independentes, da toxicidade por Al3+ e H+. Este provavelmente não é o caso, sendo que o pH baixo pode ser um fator de predisposição das células ao Al3+. As evidências indicam que o pH baixo causa desarranjos na parede de células em crescimento, gerando estresse que pode comprometer a sua funcionalidade e integridade. É provável que a susceptibilidade a este estresse deve ser dependente da pressão de turgor. Por sua vez, o metabolismo oxidativo e a geração de espécies reativas de oxigênio (ROS) na parede celular podem modular a sua extensibilidade por romper ou criar ligações dentro ou entre cadeias de polissacarídeo. Há grande interesse em se conhecer se, à semelhança do que ocorre em leveduras, as células vegetais possuem um sistema de percepção e resposta a estresse da parede. Os pêlos radiculares em crescimento são sensíveis a pH baixo e estresse hipo-osmótico e constituem um bom modelo experimental para estes estudos. Os objetivos deste trabalho foram: a) Otimizar um sistema experimental para o estudo de pêlos radiculares de tomateiro (Solanum lycopersicum L. cv Micro-Tom); b) Avaliar as respostas dos pêlos radiculares ao estresse por pH baixo e hipo-osmolaridade; c) Examinar o papel da modulação oxidativa da parede celular nestas respostas; e d) Avaliar a resposta de diferentes mutantes hormonais de Micro-Tom a estes fatores de estresse. Os principais parâmetros avaliados foram a taxa de alongamento (µm.min-1) e a freqüência de rompimento dos pêlos. Tanto o estresse por pH baixo quanto choques hipo-osmóticos resultaram em taxas de alongamento significativamente diminuídos e o rompimento de pêlos radiculares, mas os efeitos dos tratamentos hipo-osmóticos foram mais marcantes. Uma curva de resposta frente à osmolaridade da solução externa revelou que a taxa de alongamento aumentou com a diminuição da osmolaridade até alcançar um limiar em que houve redução drástica da taxa de alongamento e começou-se a observar o rompimento de pêlos. Também se observou uma interação entre hipo-osmolaridade e pH baixo. O emprego do inibidor difenileno iodônio não forneceu evidências do envolvimento de NADPH oxidases da membrana plasmática na resposta de pêlos radiculares a choque hipo-osmótico ou pH baixo. Já no caso do inibidor ácido salicilhidroxâmico, encontrou-se evidências do envolvimento de peroxidases da parede. Nos mutantes hormonais dgt (pouco sensível a auxina) e epi (super produtor de etileno), mas não em not (deficiente em ácido abscísico), os pêlos radiculares apresentaram uma melhor resposta de ajustamento a choque hipo-osmótico do que Micro-Tom, reduzindo o alongamento e o rompimento dos pêlos. Este trabalho fornece fortes evidências de que os pêlos radiculares possuem um mecanismo de percepção e resposta a estresse da parede visando à manutenção de sua integridade e que apresentam bom potencial como sistema modelo nesta linha de pesquisa / Soil acidity is a major factor limiting plant growth worldwide. Aluminum toxicity, which occurs only at low pH, has been extensively studied, whereas low pH stress has received much less attention. Studies on Al3+ and H+ toxicity make the underlying assumption that the effects of these stress factors are additive, and, therefore independent of each other. However, this is most likely not the case and low pH may be a factor which increases susceptibility to further injury by Al3+. There is evidence that low pH causes disruption in cell wall structure of growing cells, which might jeopardize cell wall functionality and integrity. It is likely that turgor pressure plays an important role in cell wall stress caused by low pH. The apoplastic metabolism of reactive oxygen species (ROS) can modulate cell wall extensibility by making or breaking bonds within and between cell wall polysaccharides. A major question is whether, similarly to yeast, plant cells have a cell wall integrity signaling and response system. Growing root hairs are sensitive to low pH and hypo-osmotic stress and are potentially good experimental systems for such investigations. The objectives of this study were: a) Optimize an experimental system to examine tomato (Solanum lycopersicum L. cv Micro-Tom) root hairs; b) Examine the response of root hairs to low pH and hypo-osmotic stress; c) Examine the role of oxidative modulation of the cell wall in these responses; and d) Evaluate the response of different hormonal mutants of Micro-Tom to these stress factors. Root hair elongation rates (µm.min-1) and the frequency of cell bursting were the major experimental parameters which were evaluated. Both low pH and, more markedly, hypo-osmotic stress caused significant reductions in elongation rates and the bursting of root hair tips. In a response curve to varying osmolarities of the external medium, root hair elongation rates increased with decreasing osmolarities until a threshold was reached and elongation rates decreased drastically and the bursting of root hairs began to be observed. Interactions between low pH and hypo-osmolarity were observed. The use of the inhibitor diphenylene iodonium (DPI) did not provide evidence for the involvement of plasma membrane NADPH in the response of root hairs to low pH and hypo-osmotic shock. However, a role for cell wall peroxidases was provided by use of the inhibitor salicylhydroxamic acid (SHAM). Root hairs of the hormonal mutants dgt (low sensitivity to auxin) and epi (ethylene super producer), but not not (deficient in abscisic acid), displayed a more effective response to hypo-osmotic shock than Micro-Tom, by decreasing elongation rates and cell bursting to a greater degree. This study provides strong evidence to suggest that root hairs have a cell wall integrity response system and that root hairs are potentially good cell model systems for such research

A acidez do solo é um dos principais fatores limitantes à produção vegetal. A toxicidade por alumínio, que ocorre apenas a pH baixo, tem sido extensamente investigada, enquanto o estresse causado pelo pH baixo tem recebido pouca atenção. Os estudos nesta área quase sempre presumem efeitos aditivos, e portanto independentes, da toxicidade por Al3+ e H+. Este provavelmente não é o caso, sendo que o pH baixo pode ser um fator de predisposição das células ao Al3+. As evidências indicam que o pH baixo causa desarranjos na parede de células em crescimento, gerando estresse que pode comprometer a sua funcionalidade e integridade. É provável que a susceptibilidade a este estresse deve ser dependente da pressão de turgor. Por sua vez, o metabolismo oxidativo e a geração de espécies reativas de oxigênio (ROS) na parede celular podem modular a sua extensibilidade por romper ou criar ligações dentro ou entre cadeias de polissacarídeo. Há grande interesse em se conhecer se, à semelhança do que ocorre em leveduras, as células vegetais possuem um sistema de percepção e resposta a estresse da parede. Os pêlos radiculares em crescimento são sensíveis a pH baixo e estresse hipo-osmótico e constituem um bom modelo experimental para estes estudos. Os objetivos deste trabalho foram: a) Otimizar um sistema experimental para o estudo de pêlos radiculares de tomateiro (Solanum lycopersicum L. cv Micro-Tom); b) Avaliar as respostas dos pêlos radiculares ao estresse por pH baixo e hipo-osmolaridade; c) Examinar o papel da modulação oxidativa da parede celular nestas respostas; e d) Avaliar a resposta de diferentes mutantes hormonais de Micro-Tom a estes fatores de estresse. Os principais parâmetros avaliados foram a taxa de alongamento (µm.min-1) e a freqüência de rompimento dos pêlos. Tanto o estresse por pH baixo quanto choques hipo-osmóticos resultaram em taxas de alongamento significativamente diminuídos e o rompimento de pêlos radiculares, mas os efeitos dos tratamentos hipo-osmóticos foram mais marcantes. Uma curva de resposta frente à osmolaridade da solução externa revelou que a taxa de alongamento aumentou com a diminuição da osmolaridade até alcançar um limiar em que houve redução drástica da taxa de alongamento e começou-se a observar o rompimento de pêlos. Também se observou uma interação entre hipo-osmolaridade e pH baixo. O emprego do inibidor difenileno iodônio não forneceu evidências do envolvimento de NADPH oxidases da membrana plasmática na resposta de pêlos radiculares a choque hipo-osmótico ou pH baixo. Já no caso do inibidor ácido salicilhidroxâmico, encontrou-se evidências do envolvimento de peroxidases da parede. Nos mutantes hormonais dgt (pouco sensível a auxina) e epi (super produtor de etileno), mas não em not (deficiente em ácido abscísico), os pêlos radiculares apresentaram uma melhor resposta de ajustamento a choque hipo-osmótico do que Micro-Tom, reduzindo o alongamento e o rompimento dos pêlos. Este trabalho fornece fortes evidências de que os pêlos radiculares possuem um mecanismo de percepção e resposta a estresse da parede visando à manutenção de sua integridade e que apresentam bom potencial como sistema modelo nesta linha de pesquisa / Soil acidity is a major factor limiting plant growth worldwide. Aluminum toxicity, which occurs only at low pH, has been extensively studied, whereas low pH stress has received much less attention. Studies on Al3+ and H+ toxicity make the underlying assumption that the effects of these stress factors are additive, and, therefore independent of each other. However, this is most likely not the case and low pH may be a factor which increases susceptibility to further injury by Al3+. There is evidence that low pH causes disruption in cell wall structure of growing cells, which might jeopardize cell wall functionality and integrity. It is likely that turgor pressure plays an important role in cell wall stress caused by low pH. The apoplastic metabolism of reactive oxygen species (ROS) can modulate cell wall extensibility by making or breaking bonds within and between cell wall polysaccharides. A major question is whether, similarly to yeast, plant cells have a cell wall integrity signaling and response system. Growing root hairs are sensitive to low pH and hypo-osmotic stress and are potentially good experimental systems for such investigations. The objectives of this study were: a) Optimize an experimental system to examine tomato (Solanum lycopersicum L. cv Micro-Tom) root hairs; b) Examine the response of root hairs to low pH and hypo-osmotic stress; c) Examine the role of oxidative modulation of the cell wall in these responses; and d) Evaluate the response of different hormonal mutants of Micro-Tom to these stress factors. Root hair elongation rates (µm.min-1) and the frequency of cell bursting were the major experimental parameters which were evaluated. Both low pH and, more markedly, hypo-osmotic stress caused significant reductions in elongation rates and the bursting of root hair tips. In a response curve to varying osmolarities of the external medium, root hair elongation rates increased with decreasing osmolarities until a threshold was reached and elongation rates decreased drastically and the bursting of root hairs began to be observed. Interactions between low pH and hypo-osmolarity were observed. The use of the inhibitor diphenylene iodonium (DPI) did not provide evidence for the involvement of plasma membrane NADPH in the response of root hairs to low pH and hypo-osmotic shock. However, a role for cell wall peroxidases was provided by use of the inhibitor salicylhydroxamic acid (SHAM). Root hairs of the hormonal mutants dgt (low sensitivity to auxin) and epi (ethylene super producer), but not not (deficient in abscisic acid), displayed a more effective response to hypo-osmotic shock than Micro-Tom, by decreasing elongation rates and cell bursting to a greater degree. This study provides strong evidence to suggest that root hairs have a cell wall integrity response system and that root hairs are potentially good cell model systems for such research

No description available.