Human immunodeficiency virus type 1 (HIV-1) is a member of the lentivirus subfamily of retroviruses. HIV-1 expresses multiple genes from a single provirus by alternative splicing. Early in viral expression, fully spliced 2-kb viral RNA is exported from the nucleus and encodes the viral regulatory protein, Rev, which is essential for nuclear transport of partially spliced and unspliced genomic-length RNA. Rev binds to an RNA structural element called the Rev response element (RRE) and mediates nuclear export through the leucine-rich nuclear export signal (NES) pathway. The human Rev Interacting Protein (hRIP) interacts specifically with the Rev NES. Rev NES mutants that are unable to export Rev-dependent RNAs are also unable to bind to hRIP. The hRIP cDNA encodes a 562 amino acid protein containing an N-terminal zinc finger with homology to Arf GAP domains, a central serine and threonine rich region, and C-terminal phenylalanine-glycine (FG) repeats characteristic of nucleoporins. To identify an hRIP ortholog in a genetically tractable organism, we performed database searches using the N-terminal zinc finger of hRIP. Using this approach, we identified a novel gene in Schizosaccharomyces pombe. Alignment of the entire reading frame of the putative ortholog with hRIP indicates similarity with the serine/threonine rich region and with the FG repeats, suggesting that S. pombecould be a good model system to study the cellular function of hRIP. We find that the S. pombe ORF is an essential gene, which encodes a 483 amino acid protein that is also able to interact with the NES of HIV-1 Rev. Based on being an essential gene, and the presence of a putative Arf GAP domain, the ORF was named an Arf GAP essential for viability, agv1+. We show that Agv1 is not directly involved in the nuclear export of poly(A+) RNA or 5S rRNA, nuclear export of leucine-rich NES-containing proteins, or nuclear import of nuclear localization signal (NLS)-containing proteins. However, Agv1 does appear to play a role in the cytoplasmic localization of 5S rRNA. We demonstrate that loss of Agv1 alters the localization of endoplasmic reticulum (ER) membrane and Golgi membrane resident proteins, accumulates intracellular membrane, and blocks processing of carboxypeptidase Y. Furthermore, the S. cerevisiae ADP-ribosylation factor (Arf) GTPase activating protein (GAP) Glo3, but not a catalytically inactive Glo3 mutant [R59K], is able to partially compensate for the loss of Agv1 function in temperature sensitive strains, indicating that Agv1 is an S. pombe Arf GAP with some functional features similar to S. cerevisiae Glo3.

Cytokinesis is the final event of the cell division cycle and results in physical and irreversible separation of a mother cell into two daughter cells. Cytokinesis must only occur after chromosomes have segregated during mitosis to ensure each daughter cell receives the proper complement of genetic material. Failure to execute normal cytokinesis can result in aneuploidy and/or polyploidy, a hallmark of many cancers. Cytokinesis occurs mechanically through constriction of an actin-myosin based contractile ring, while initiation of ring constriction is temporally and spatially mediated by complex signaling networks. It is absolutely crucial that cytokinesis is tightly coordinated with the cell cycle in order to preserve the fidelity of cell division. We hypothesized that to achieve such tight control of cytokinesis, cells may utilize both promotional and inhibitory signals, however how cells maintained this control was poorly understood. The goal of this thesis was to characterize how cells regulate signaling of cytokinesis, both positively and negatively, during cell division using the fission yeast Schizosaccharomyces pombe as a model organism. Two approaches were employed. (1) We first sought to characterize the positive timing mechanism that signals cytokinesis though a detailed investigation of Sid1p, a protein kinase essential for activation of ring constriction. (2) Secondly, we sought to define how cells negatively regulate cytokinesis through investigation of Dma1p, a spindle checkpoint protein implicated in inhibition of cytokinesis. Our results reveal a conserved signaling network, termed the Septation Initiation Network (SIN), of which Sid1p is an intermediate component, that controls temporal and spatial regulation of cytokinesis. We found Sid1p is additionally controlled by Cyclin Dependent Kinase activity, uncovering an important link between mitotic events and initiation of cytokinesis. Furthermore, we found that aberrant SIN activation can override a microtubule-damage-induced spindle checkpoint arrest. This effect is counteracted by Dma1p, which normally inhibits the SIN during checkpoint activation to preserve cell viability until damage is repaired. We conclude that signaling cytokinesis is tightly coordinated with mitosis in S. pombe by positive signals acting through Sid1p and the SIN, and under certain conditions, negative signals acting through Dma1p. Considering the conservation of cell cycle regulators in the eukaryotic kingdom, it is likely that similar mechanisms to control cytokinesis exist in humans.

The coordination between cell growth and division is a highly regulated process that is intimately linked to the cell cycle. Efforts to identify an independent mechanism that measures cell size have been unsuccessful. Instead, we propose that size control is an intrinsic function of the basic cell cycle machinery. My work shows that in the fission yeast Schizosaccharomyces pombe Cdc25 accumulates in a size dependent manner. This accumulation of Cdc25 occurs over a large range of cell sizes. Additionally, experiments with short pulses of cycloheximide have shown that Cdc25 is an inherently unstable protein that quickly returns to a size dependent equilibrium in the cell suggesting that Cdc25 concentration is dependent on size and not time. Thus, Cdc25 can act as a sizer for the cell. However, cells are still viable when Cdc25 is constitutively expressed suggesting that there is another sizer in the case that Cdc25 expression is compromised. Cdc13 is a likely candidate due to the similar characteristics to Cdc25 and the ability to activate Cdc2. Cdc13 accumulates during the cell cycle in a manner similar to Cdc25. I show that in the absence of Cdc2 tyrosine phosphorylation, the cell size is sensitive to Cdc13 activity showing that Cdc13 accumulation can determine when cells enter mitosis. These results suggest a two sizer model where Cdc25 is the main sizer with Cdc13 acting as a backup sizer in the event of Cdc25 expression is compromised. Additionally, in the absence of Cdc2 phosphorylation by the kinases Wee1 and Mik1, mitotic entry is regulated by the activity of Cdc2. In the absence of Cdc2 phosphorylation, this activity is regulated by binding of cyclins to Cdc2. Under these circumstances, the activity of Cdc13 can regulate mitotic entry provide further evidence that Cdc13 could be a sizer of the cell in the case where Cdc25 expression is compromised. The results I present in this dissertation provide the groundwork for understanding how cells regulate size and how this size regulation affects cell cycle control in S. pombe . The results show how the intrinsic cell cycle machinery can act as a sizer for the G2/M transition in S. pombe . Interestingly, this mitotic commitment pathway is well conserved suggesting a general solution for size control in eukaryotes at the G2/M transition. Understanding the mechanism of how protein concentration is regulated in a size dependent manner will give much needed insight into how cells control size. Elucidating the mechanism for size control will capitalize on decades of research and deepen our understanding of basic cell biology.

Die Anpassung des Zellwachstums eukaryotischer und prokaryotischer Zellen an sich ändernde intra- und extrazelluläre Signale wie Nährstoffverfügbarkeit, Wachstumsfaktoren und dem zellulären Energielevel bedarf eines effektiven Regulationssystems. In Säugern übernimmt der TSC-Komplex als negativer Regulator des TOR-Signalweges eine wichtige Rolle bei der Regulation des Zellwachstums. In S. pombe ist der TSC-Komplex konserviert. Zudem existieren Homologe der Untereinheiten der AMPK, welche in Säugern den TSC-Komplex positiv regulieren. In der vorliegenden Arbeit konnte die Existenz von zwei funktionell getrennten AMPK-Komplexen nachgewiesen werden: AMPK I, bestehend aus Ssp2, SPCC1919.03c und Cbs2 und AMPK II, bestehend aus Ppk9, SPCC1919.03c und Cbs2. Genetische Daten lassen eine Beteiligung von AMPK I an der Regulation der sexuellen Differenzierung, der Adaption an osmotischen Stress und der Verwertung nicht-fermentierbarer Kohlenstoffquellen vermuten. AMPK II scheint für die Adaption an Cadmiumstress wichtig zu sein.In der vorliegenden Arbeit wurde weiterhin die Beteiligung der beiden AMPK alpha-Isoformen am TSC/Rhb1/TOR-Signalweg in S. pombe näher untersucht. Dabei deutete sich an, dass Ppk9 und der TSC-Komplex weder synergistische noch antagonistische Funktionen in der Zelle ausüben. Im Gegensatz dazu scheinen Ssp2 und die TSC-Proteine antagonistische Funktionen auszuüben. Einige Wachstumsdefekte der ssp2 -Deletionsmutanten können durch eine Hyperaktivierung des TSC/Rhb1/TOR-Signalweges supprimiert werden. Die Deletion von ssp2 führt zu einer Suppression des Wachstumsdefektes von Leucin-auxotrophen tsc-Mutanten. Diese Beobachtung erlaubt die Einordnung von Ssp2 in einem zum TSC/Rhb1/TOR-Weg parallelen Signalweg. Im Gegensatz zu Säugern scheinen in S. pombe TSC/Rhb1/TORC1 und Ssp2 einen gemeinsamen Effektor unabhängig voneinander zu regulieren, um verschiedene Wachstumsbedingungen miteinander zu integrieren und das Zellwachstum entsprechend anzupassen.

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The MCM helicase plays an important role in eukaryotic DNA replication, unwinding double stranded DNA ahead of the replication fork. MCM is a hetero-hexamer consisting of the six related proteins, Mcm2-Mcm7. The distantly related MCM-binding protein (MCM-BP) was first identified in a screen for proteins interacting with MCM2-7 in human cells and was found to specifically interact with Mcm3-7 but not Mcm2. It is conserved in most eukaryotes and seems to play an important role in DNA replication but its exact function is not clear yet. This study contributes to the understanding of the fission yeast homologue of MCM-BP, named Mcb1, but also of MCM-BP in general. Results presented in this thesis document the initial biochemical characterisation of the complex Mcb1 forms with Mcm proteins, the MCMᴹᶜᵇ¹ complex. Interactions of Mcb1 with Mcm proteins, potential interaction sites between the proteins and the size of the complex were analysed using a variety of methods, including tandem affinity purification, co-immunoprecipitation, sucrose gradients and in vitro pull-down assays. Sequence analysis and structure prediction were utilised to gain some insight into Mcb1 and MCM-BP ancestry and structure. Results presented here indicate that fission yeast Mcb1 shares homology with Mcm proteins and forms a complex with Mcm3-Mcm7 but not Mcm2 and thus replaces the latter in an alternative high molecular weight complex that is likely to have an MCM-like appearance. Deletion of mcb1⁺ showed that Mcb1 is essential in fission yeast. To examine the cellular function of the protein, temperature-sensitive mutants were generated. Inactivation of Mcb1 leads to an increase in DNA damage and cell cycle arrest in G2-phase depending on the activation of the Chk1 dependent DNA damage checkpoint. Similar observations were made when Mcb1 was overexpressed, indicating that certain levels of the protein are important for accurate DNA replication. Construction of truncated versions of Mcb1 suggested that almost the full-length protein is needed for proper function.

DNA double-strand breaks (DSBs) are highly genotoxic lesions, which can promote chromosomal rearrangements and tumorigenesis through oncogene activation or loss of heterozygosity (LOH) at tumour suppressor loci. To identify new genes involved in DSB repair and genome stability, an S. pombe deletion library was screened for mutants which exhibited sensitivity to the DNA damaging agents bleomycin and/or MMS. 192 mutants were isolated which exhibited increased sensitivity to one or both of these agents. These mutants were further analysed in a sectoring assay and mutants sought which exhibited elevated levels of break-induced loss and rearrangement of a non-essential minichromosome. Using this approach 57 genes were identified, including all known homologous recombination (HR) and DNA damage checkpoint genes present in the library. Further, quantitative analysis of DSB repair indicated that 25 of these genes functioned to promote efficient HR repair, thus representing a comprehensive HR gene set in fission yeast. Included in this gene set are 10 genes not previously implicated in HR repair; nse5⁺, nse6⁺, ddb1⁺, cdt2⁺, alm1⁺, snz1⁺, kin1⁺, pal1⁺, SPAC31G5.18c⁺ and SPCC613.03⁺. Detailed characterisation of ddb1Δ and cdt2Δ established a role for the Ddb1-Cul4Cdt2 ubiquitin ligase complex in HR. The findings presented here support a model in which break-induced Rad3 and Ddb1-Cul4Cdt2 ubiquitin ligase-dependent Spd1 degradation promotes ribonucleotide reductase activation and nucleotide biosynthesis, which is required for post-synaptic ssDNA gap filling during HR repair. Lastly, the role of HR genes in suppressing chromosome loss and rearrangements was examined. A striking inverse correlation between levels of gene conversion and levels of both chromosome loss and LOH was observed across the HR gene deletion set. These findings support a common and likely evolutionarily conserved role for HR genes in suppressing both chromosome loss and break-induced chromosomal rearrangements resulting from extensive end processing associated with failed HR repair.