Proteins have evolved over millions of years to serve a plethora of highly specialized functions in biological systems. Given the enormous diversity in structure and function, it is truly surprising that only 20 different amino acids are utilized as the building blocks of proteins. Furthermore, only a small set of metal cations that are biologically available are used as structural or catalytically active cofactors in proteins, whereas rare metal cations such as platinum, ruthenium or rhodium remain absent. In the 20th century myriad catalysts, based on non-biological transition metals, emerged that can facilitate numerous organic transformations. The goal of the thesis was to introduce new functions into proteins by attaching platinum metals and fluorescent metal sensors. Thus, semi-synthetic proteins for catalytic and analytical applications were generated. The replacement of organic solvents by environmentally benign solvents such as water is an imperative step towards achieving "green chemistry". The combination of small molecule catalysts with proteins may introduce new functions and take advantage of the benefits of "both worlds" while avoiding their potential drawbacks. Therefore semi-synthetic catalysts were developed for enantioselective organic reactions in aqueous medium. A suitable reaction, reaction conditions and catalytic system for later utilization in a semi-synthetic protein were designed, developed and characterized. Ruthenium porphyrins catalyzed cyclopropanation reactions with fair yields and high stereoselectivity in aqueous medium. The successful reaction in water was a crucial requirement for a catalytically active semi-synthetic protein. Mechanistic studies did not elucidate the actual catalytic species for the formation of the cyclopropanation product and the side-product diethyl maleate; however, new insights were gained from the analysis of potential reaction pathways. Moreover, studies of the influence of axial ligands, resembling likely residues coordinating to the ruthenium metal center in the active site of a semi-synthetic protein, on the carbene formation of ruthenium porphyrins illustrated that coordination of axial ligands may inhibit the catalytic activity. The generation of ruthenium porphyrin based semi-synthetic proteins and their subsequent catalysis of cyclopropanation reactions was carried out. Myoglobin and myoglobin mutants were successfully reconstituted with a heme-like ruthenium carbonyl porphyrin; however, none of the formed semi-synthetic proteins catalyzed the enantioselective cyclopropanation of styrene. Efforts to determine the reconstitution efficiency of the generated semi-synthetic were hampered by problems to purify the generated semi-synthetic proteins that are probably due to non-specific binding of the ruthenium porphyrin to the protein surface. The exploration of labile metal pools of the biologically relevant transition metals copper, iron and zinc in cells was the goal of developing semi-synthetic proteins for analytical applications. Combining fluorescent proteins with colored or fluorescent metal chelators by forming semi-synthetic proteins allows taking advantage of their beneficial properties while avoiding their downsides. This design offers an attractive platform for in vivo metal sensing. Plasmids encoding fluorescent proteins, targeting sequences and AGT or intein fusion domains (necessary for labeling) for eukaryotic and prokaryotic expression were generated. The targeting of intracellular compartments (mitochondria, nucleus and TGN) was successful (confirmed by light microscopy experiments with transfected mammalian cells). In vitro labeling experiments of expressed and purified fusion proteins with rhodamine derivatives succeeded with AGT based fusion proteins; however, labeling of fusion proteins by trans-splicing with split-inteins failed. A new Zinc(II)-chelator was attached to an AGT based protein and the resulting semi-synthetic protein exhibited strong changes of fluorescence in the presence of zinc(II). This represents an important step towards the goal of in vivo cell imaging of labile zinc(II) pools. Despite extensive efforts, all attempts failed to generate a chelator that forms Cu(I)-complexes with the 1:1 stochiometry (ligand:metal) that is necessary for metal sensing with semi-synthetic proteins.

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A DOW é uma empresa que busca continuamente por alternativas para agregar maior valor aos seus produtos através da avaliação das tendências apresentadas pela indústria química. Dentro desta dinâmica, identificou-se uma grande necessidade do mercado de fluidos de corte por inibidores de corrosão mais eficientes e adequados às novas questões regulatórias. Desta avaliação surgiu o tema deste Mestrado Profissional, no qual se estudou a síntese e aplicação de alcanolamidas em fluidos de corte como inibidores de corrosão. Optou-se pela síntese enzimática na ausência de solventes orgânicos por se tratar de uma nova tecnologia à DOW e estar alinhada aos preceitos de sustentabilidades promovidos pela empresa. A escolha pela avaliação das alcanolamidas surgiu de um estudo realizado pela companhia sobre novas tecnologias utilizadas neste segmento e a possibilidade de aplicação destes compostos em outros mercados de atuação da empresa. Foram sintetizadas quatro alcanolamidas, RMEA, RMIPA, RDIPA e RAEPD, obtidas respectivamente da reação entre o ácido ricinoléico e os aminoálcoois: 2-hidroxietilamina, 1-amino-2-propanol, bis-(2-hidroxipropil)amina e 2-amino-2-etil-1,3-propanodiol. O catalisador Novozym 435 (lipase) foi utilizado em todas as sínteses, e estas realizadas de acordo com um planejamento fatorial completo 23. Os produtos sintetizados foram caracterizados por RMN 13C, 1H e dept 135, Espectroscopia no Infravermelho e Espectroscopia de Massas. O rendimento das reações foi mensurado através da técnica de HPLC. Com base nos resultados obtidos foi possível, através do planejamento fatorial, determinar as condições reacionais nas quais o rendimento é maximizado (T = 80 °C; Catalisador = 15 mol/g de ácido ricinoléico; rotação = 600 rpm). A única desvantagem deste processo de síntese foi o custo inerente ao catalisador utilizado. Após o término do planejamento fatorial foram formulados oito fluidos de corte semissintéticos com as alcanolamidas sintetizadas e dois fluidos com o inibidor convencionalmente utilizado. Após verificar a estabilidade térmica destes fluidos, a eficiência à inibição da corrosão foi mensurada através da técnica de manchamento em ferro fundido. Os fluidos contendo as alcanolamidas apresentaram melhor desempenho à inibição da corrosão, porém, não foi possível mensurar quantitativamente as diferenças observadas através desta técnica. Com isso, os compostos foram submetidos a ensaios de perda de massa e polarização potenciodinâmica em ácido clorídrico, além de microscopia atômica para avaliar o efeito dos inibidores na superfície metálica. Através destes estudos foi possível comprovar que os produtos RDIPA e RAEPD possuem maior eficiência à inibição da corrosão. O mecanismo de inibição destes compostos, determinado através de isotermas de Langmuir, ocorre por fisissorção. Após a comprovação das propriedades anticorrosivas dos compostos sintetizados, foram analisadas as seguintes propriedades dos fluidos produzidos: viscosidade, formação de espuma, ângulo de contato, desgaste Reichert, alcalinidade e contaminação microbiológica. Observou-se um aumento da viscosidade e formação de espuma do fluido concentrado. Entretanto, comprovou-se que não há impacto significativo destas propriedades durante a aplicação destes fluidos. As alcanolamidas impactaram positivamente no aumento da lubricidade e reserva alcalina dos fluidos, além de diminuir a taxa de corrosão e a susceptibilidade dos fluidos à contaminação microbiológica, e facilitar o tratamento do resíduo gerado no processo de usinagem devido a maior biodegradabilidade das alcanolamidas. / DOW is a company that continuously searches for alternatives to add greater value to their products through the assessment of trends presented by the chemical industry. Within this dynamic it was identified a great need for more efficient and suitable (to new regulatory issues) corrosion inhibitors applied in metalworking fluids. This Master Thesis came up from this evaluation, where it was studied the synthesis and application of alkanolamides in metalworking fluids as corrosion inhibitors. The enzymatic synthesis in the absence of organic solvents was the chosen production process of alkanolamides because it\'s a new technology to DOW and it\'s aligned with sustainable precepts promoted by the company. The choice for the evaluation of alkanolamides emerged from a study conducted by the company on new technologies applied in metalworking fluids and the possibility of application of these compounds in other markets. It was synthesized four alkanolamides, RMEA, RMIPA, RDIPA and RAEPD, respectively obtained from the reaction between ricinoleic acid and following amino alcohols: 2-hydroxyethylamine, 1-amino-2-propanol, bis(2-hydroxypropyl)amine and 2-amino-2-ethyl-1,3-propanediol. The Novozym 435 catalyst (lipase) was used for all syntheses, and these were carried out according to a full factorial design for three factors. The synthesized products were characterized by NMR 13C, 1H and dept 135, Infrared and Mass Spectroscopy. The yield of the reactions was measured by HPLC technique. Based on the results it was possible, through the factorial design, determine the reaction conditions in which the yield is maximized (T = 80 ° C; Catalyst = 15 mol / g of ricinoleic acid; Speed = 600 rpm). The only disadvantage found of this synthesis process was the cost of the catalyst used. After the factorial design eight semi-synthetic metalworking fluids were formulated with the synthesized alkanolamides and two with the corrosion inhibitor conventionally used. After checking the thermal stability of these fluids, the corrosion inhibition efficiency was measured by staining technique of cast iron. Fluids containing alkanolamides performed better corrosion inhibition, however, was not possible to measure quantitatively the differences observed using this technique. Thus, the compounds were subjected to weight loss and potentiodynamic polarization tests in hydrochloric acid, besides the atomic microscopy to evaluate the effect of the inhibitors on the metal surface. Through these studies it was possible to demonstrate that RDIPA and RAEPD products were more efficient at inhibiting corrosion. The mechanism of inhibition of these compounds, as determined by Langmuir isotherms, is by physisorption. After checking the anticorrosive properties of the synthesized compounds, the following properties were analyzed from the formulated fluids: viscosity, foaming, contact angle, Reichert friction, alkalinity and microbiological contamination. It was observed an increase in viscosity and foaming on the concentrated fluids. However, it was found that there is no significant impact of these properties during the application of these fluids. Alkanolamides enabled an increase in lubricity and alkalinity of the formulated fluids. Additionally they reduced the corrosion rate and the susceptibility of fluids to microbiological contamination, and would make easier the treatment of the waste generated in cutting process due to their higher biodegradability.

A DOW é uma empresa que busca continuamente por alternativas para agregar maior valor aos seus produtos através da avaliação das tendências apresentadas pela indústria química. Dentro desta dinâmica, identificou-se uma grande necessidade do mercado de fluidos de corte por inibidores de corrosão mais eficientes e adequados às novas questões regulatórias. Desta avaliação surgiu o tema deste Mestrado Profissional, no qual se estudou a síntese e aplicação de alcanolamidas em fluidos de corte como inibidores de corrosão. Optou-se pela síntese enzimática na ausência de solventes orgânicos por se tratar de uma nova tecnologia à DOW e estar alinhada aos preceitos de sustentabilidades promovidos pela empresa. A escolha pela avaliação das alcanolamidas surgiu de um estudo realizado pela companhia sobre novas tecnologias utilizadas neste segmento e a possibilidade de aplicação destes compostos em outros mercados de atuação da empresa. Foram sintetizadas quatro alcanolamidas, RMEA, RMIPA, RDIPA e RAEPD, obtidas respectivamente da reação entre o ácido ricinoléico e os aminoálcoois: 2-hidroxietilamina, 1-amino-2-propanol, bis-(2-hidroxipropil)amina e 2-amino-2-etil-1,3-propanodiol. O catalisador Novozym 435 (lipase) foi utilizado em todas as sínteses, e estas realizadas de acordo com um planejamento fatorial completo 23. Os produtos sintetizados foram caracterizados por RMN 13C, 1H e dept 135, Espectroscopia no Infravermelho e Espectroscopia de Massas. O rendimento das reações foi mensurado através da técnica de HPLC. Com base nos resultados obtidos foi possível, através do planejamento fatorial, determinar as condições reacionais nas quais o rendimento é maximizado (T = 80 °C; Catalisador = 15 mol/g de ácido ricinoléico; rotação = 600 rpm). A única desvantagem deste processo de síntese foi o custo inerente ao catalisador utilizado. Após o término do planejamento fatorial foram formulados oito fluidos de corte semissintéticos com as alcanolamidas sintetizadas e dois fluidos com o inibidor convencionalmente utilizado. Após verificar a estabilidade térmica destes fluidos, a eficiência à inibição da corrosão foi mensurada através da técnica de manchamento em ferro fundido. Os fluidos contendo as alcanolamidas apresentaram melhor desempenho à inibição da corrosão, porém, não foi possível mensurar quantitativamente as diferenças observadas através desta técnica. Com isso, os compostos foram submetidos a ensaios de perda de massa e polarização potenciodinâmica em ácido clorídrico, além de microscopia atômica para avaliar o efeito dos inibidores na superfície metálica. Através destes estudos foi possível comprovar que os produtos RDIPA e RAEPD possuem maior eficiência à inibição da corrosão. O mecanismo de inibição destes compostos, determinado através de isotermas de Langmuir, ocorre por fisissorção. Após a comprovação das propriedades anticorrosivas dos compostos sintetizados, foram analisadas as seguintes propriedades dos fluidos produzidos: viscosidade, formação de espuma, ângulo de contato, desgaste Reichert, alcalinidade e contaminação microbiológica. Observou-se um aumento da viscosidade e formação de espuma do fluido concentrado. Entretanto, comprovou-se que não há impacto significativo destas propriedades durante a aplicação destes fluidos. As alcanolamidas impactaram positivamente no aumento da lubricidade e reserva alcalina dos fluidos, além de diminuir a taxa de corrosão e a susceptibilidade dos fluidos à contaminação microbiológica, e facilitar o tratamento do resíduo gerado no processo de usinagem devido a maior biodegradabilidade das alcanolamidas. / DOW is a company that continuously searches for alternatives to add greater value to their products through the assessment of trends presented by the chemical industry. Within this dynamic it was identified a great need for more efficient and suitable (to new regulatory issues) corrosion inhibitors applied in metalworking fluids. This Master Thesis came up from this evaluation, where it was studied the synthesis and application of alkanolamides in metalworking fluids as corrosion inhibitors. The enzymatic synthesis in the absence of organic solvents was the chosen production process of alkanolamides because it\'s a new technology to DOW and it\'s aligned with sustainable precepts promoted by the company. The choice for the evaluation of alkanolamides emerged from a study conducted by the company on new technologies applied in metalworking fluids and the possibility of application of these compounds in other markets. It was synthesized four alkanolamides, RMEA, RMIPA, RDIPA and RAEPD, respectively obtained from the reaction between ricinoleic acid and following amino alcohols: 2-hydroxyethylamine, 1-amino-2-propanol, bis(2-hydroxypropyl)amine and 2-amino-2-ethyl-1,3-propanediol. The Novozym 435 catalyst (lipase) was used for all syntheses, and these were carried out according to a full factorial design for three factors. The synthesized products were characterized by NMR 13C, 1H and dept 135, Infrared and Mass Spectroscopy. The yield of the reactions was measured by HPLC technique. Based on the results it was possible, through the factorial design, determine the reaction conditions in which the yield is maximized (T = 80 ° C; Catalyst = 15 mol / g of ricinoleic acid; Speed = 600 rpm). The only disadvantage found of this synthesis process was the cost of the catalyst used. After the factorial design eight semi-synthetic metalworking fluids were formulated with the synthesized alkanolamides and two with the corrosion inhibitor conventionally used. After checking the thermal stability of these fluids, the corrosion inhibition efficiency was measured by staining technique of cast iron. Fluids containing alkanolamides performed better corrosion inhibition, however, was not possible to measure quantitatively the differences observed using this technique. Thus, the compounds were subjected to weight loss and potentiodynamic polarization tests in hydrochloric acid, besides the atomic microscopy to evaluate the effect of the inhibitors on the metal surface. Through these studies it was possible to demonstrate that RDIPA and RAEPD products were more efficient at inhibiting corrosion. The mechanism of inhibition of these compounds, as determined by Langmuir isotherms, is by physisorption. After checking the anticorrosive properties of the synthesized compounds, the following properties were analyzed from the formulated fluids: viscosity, foaming, contact angle, Reichert friction, alkalinity and microbiological contamination. It was observed an increase in viscosity and foaming on the concentrated fluids. However, it was found that there is no significant impact of these properties during the application of these fluids. Alkanolamides enabled an increase in lubricity and alkalinity of the formulated fluids. Additionally they reduced the corrosion rate and the susceptibility of fluids to microbiological contamination, and would make easier the treatment of the waste generated in cutting process due to their higher biodegradability.

L'unité structurale de la chromatine, nommée nucléosome, est composée d'un double brin d'ADN enroulé autour d'un octamère d'histone, et subit une pléthore de modifications post-traductionnelles. Les conséquences biologiques de l’acétylation des lysines et de l’isomérisation des liaisons peptidyl-prolyl ont été étudiées à travers une analyse à l’échelle atomique par RMN de systèmes d'intérêt reconstitués in vitro. Les liaisons peptidyl-prolyl du domaine N-terminal de l'histone H3 sont substrats in vitro d’une isomérase chez S. cerevisiae nommée Fpr4p, laquelle exerce un contrôle catalyse-dépendant de la transcription. La résolution de la structure du domaine catalytique de Fpr4p, à partir de contraintes géométriques mesurées par RMN, révéla un domaine canonique de la famille FKBP (FK506-binding protein). Grâce à l'analyse de la séquence primaire et aux expériences RMN, nous proposons un modèle structural préliminaire de Fpr4p entière. L'analyse fonctionnelle est réalisée grâce à trois décapeptides construits à partir de la séquence primaire de H3 chez S. cerevisiae. Ils sont tous substrats de Fpr4p et la catalyse est équivalente pour Pro16 et Pro30. La proportion à l'équilibre du conformère cis fut déterminée pour les trois peptides et celle-ci n'est pas affectée par l'activité catalytique de Fpr4p. Les structures en solution des substrats en conformation trans ont été résolues par spectroscopie RMN, et seront utilisées pour des appariements moléculaires in silico sur le domaine catalytique de Fpr4p. Pour étudier le rôle biologique de l'acétylation des histones, une méthodologie de production de protéines acétylées a été développée. Le protocole repose sur la mutation d'une lysine en cystéine d'une protéine recombinante, suivie d'une alkylation contrôlée exploitant la nucléophilie du groupe thiol préalablement introduit. La production de l'agent alkylant adéquat est simple, rapide, réalisable dans un laboratoire de biologie et permet différents marquages isotopiques du groupe acétyle. L'alkylation d'une protéine repliée fut réalisée avec succès en conditions natives. Le dimère d'histone H2A-H2B, un intermédiaire de l'assemblage du nucléosome et siège d'acétylation in vivo, fut reconstruit in vitro. Les déplacements chimiques des domaines N et C-terminaux de H2A sont cohérents avec un état intrinsèquement déstructuré bien que leurs dynamiques moléculaires ne soient pas équivalentes. / The structural unit of chromatin, the nucleosome, is composed of double-stranded DNA wrapped around a histone octamer and is subject to a plethora of post-translational modifications. The biological consequences of peptidyl-prolyl isomerization and lysine acetylation were investigated at atomic scale through analysis of in vitro reconstituted systems by NMR. Peptidyl-prolyl bonds of histone H3 N-terminal domain are substrates in vitro of an isomerase from S. cerevisiae named Fpr4p, which underlies transcriptional control dependent on its catalytic activity. The solution structure of the catalytic domain of Fpr4p was calculated based on restraints from NMR spectroscopy, and reveals a canonical catalytic domain belonging to the FK506-binding protein (FKBP) family. Based on primary sequence analysis and NMR experiments, a preliminary structural model of full length Fpr4p is also presented. Functional analyses were performed with three decapeptides designed from the primary sequence from the N-terminal tail of S. cerevisiae histone H3. All three constitute substrates of Fpr4p, with equivalent catalysis observed for Pro16 and Pro30. The equilibrium proportion of the cis-proline conformer has been determined for all three decapeptides, and these populations are unaffected by Fpr4p catalytic activity. Structural ensembles of the substrates with proline in the trans conformation were determined by using NMR spectroscopy, and will be subsequently used for in silico molecular docking onto Fpr4p. To study a second form of histone regulation, a semi-synthetic method to produce acetylated protein was developed. The protocol relies on the site-specific mutation of lysine to cysteine in recombinant proteins followed by controlled alkylation thanks to nucleophilicity of the introduced thiol. The production of the required alkylation reagent is easy, quick, and suitable for biology laboratory and allows diverse isotopic labeling within the acetyl group. Alkylation of folded proteins has also been achieved in native conditions. As one target of acetylation in vivo, the histone H2A-H2B dimer is an intermediate of nucleosome assembly and was reconstituted in vitro. Chemical shift values of the N- and C-terminal domains of H2A are in agreement with an intrinsically disordered state although they display differences in dynamic mobility.