La formation des neurites constitue une étape cruciale dans le processus de différenciation neuronale. Cependant, les mécanismes qui permettent de déterminer comment et à quelle position les neurites émergent sont toujours largement méconnus. Nous avons postulé qu'une marque moléculaire pouvait préfigurer la différenciation morphologique. Au cours de ma thèse, j'ai cherché à identifier de nouvelles molécules capables de s'accumuler aux sites d'initiation des neurites et d'en contrôler la protrusion. De manière intéressante, chez la levure, la marque moléculaire qui contrôle le site de protrusion du bourgeon a été caractérisée. Parmi les centaines de protéines contrôlant le site d'initiation chez la levure, les Septines constituent une famille de protéines bien conservée chez les vertébrés. Ces GTPases forment des filaments qui agissent comme barrière de diffusion ou « échafaudage » moléculaire. Au cours de ma thèse, je me suis donc intéressée au rôle des Septines lors de l'initiation axonale dans le modèle des neurones sensoriels de DRG chez l'embryon de poulet. Nous avons pu démontrer qu'aux stades précoces de leur développement, ces neurones formaient deux axones, un au pôle ventral et l'autre au pôle dorsal, indiquant que le nombre et la position des sites d'initiation des axones sont bien contrôlés dans ces neurones. Nous avons, ensuite, démontré que les Septines étaient bien exprimées dans les DRG aux stades précoces du développement. Mes analyses en vidéo-microscopie de la localisation de la septine 7 au cours de la différentiation des neurones de DRG montrent que les Septines s'accumulent au site d'émergence de l'axone, juste avant ou lors de sa formation. L'inhibition des Septines induite par une construction dominant-négative (DN) ou par ajout d'un inhibiteur pharmacologique bloque la formation des axones. De plus, cette inhibition entraine une modification précoce de la morphologie, qui se traduit par l'apparition de cellules multipolaires complexes et de cellules rondes sans prolongement suggérant que, conformément à notre hypothèse, les Septines sont impliquées dans l'initiation des neurites. L'ensemble de ces résultats montre que les Septines régulent la différenciation morphologique précoce des neurones sensoriels / Neurite formation is a crucial step of neuronal differentiation. However, the mechanisms that determine how and at which position neurites emerge in the soma are still poorly understood. We postulated that a molecular polarity could prefigure the morphological differentiation, with some molecules that could accumulate at the future site of axon initiation. Interestingly, such molecular polarity has been evidenced in the contest of yeast budding, with bud forming at specific position relatively to the previous bud site. Genome-wide screen identified hundreds of proteins that control bud site location. Among the vertebrate molecules homologous to those involved in budding site selection, we selected the Septins as promising candidates. These GTP-ases form filaments that act as diffusion barriers and molecular scaffolds. We investigated the contribution of Septins to axon initiation using the chick dorsal root ganglion (DRG) neurons as a model. Monitoring of cell morphology in nascent ganglia indicates that DRG neurons form a single axon at the ventral pole and a second one at the dorsal pole and that these axons seem to emerge directly after their last division. This suggests that two initiation sites are selected at opposite pole of the soma.We found that Septins homologous with those controlling budding are expressed in the early DRG developmental stages. My analyses by time-lapse video-microscopy showed that Septin7 accumulate at the site of axon emergence, just before or during its formation.We observed that a pharmacological inhibitor and a dominant-negative construct block axon formation both in vitro and in vivo respectively. Furthermore, blocking Septin function leads to the appearance of uncommon round or sea urchin-like neurons. Thus, Septins appear to regulate early step of morphological differentiation of DRG neurons, possibly by controlling axon initiation site selection

No description available.

Esta tese trata do desenvolvimento de métodos bioanalíticos, baseados na técnica de eletroforese capilar, para duas aplicações distintas: a análise de complexos formados pela ligação entre proteínas e DNA e detecção e monitoramento de hidrólise de GTP catalisada por enzimas. No primeiro capítulo descreve-se uma investigação sobre a viabilidade de ensaios tipo EMSA (?electrophoretic mobility shift assay?) em chips com microcanais para eletroforese. Os fatores de transcrição purificados c-Jun(AP1) e p-50(NFkB) foram usados nos estudos de ligação a sondas de DNA fita dupla contendo as seqüências consenso de ligação dos fatores AP1, NFkB e AP2. As sondas de DNA sintéticas continham como modificação a marcação com o corante fluorescente Cy5 ligado à extremidade 5?, sendo que as mesmas seqüências não marcadas foram usadas para experimentos de competição. Ensaios tipo EMSA em chip puderam ser realizados em cerca de 2 h com baixo consumo de amostra e sem a necessidade de usar marcação com material radioativo. A sondas de DNA e os complexos formados nas reações de ligação foram analisados no Bioanalyzer usando tanto o procedimento padrão para a análise de DNA quanto um protocolo modificado. Nesta modificação não foi usado corante de intercalação mas 4,9 nM de Cy5-dCTP que foi adicionado ao gel, permitindo apenas a detecção de DNA previamente marcado. Apesar da necessidade de ajustes no método para cada proteína testada, foi mostrado o potencial de se substituir o método de EMSA em gel por métodos baseados em eletroforese em chip. Um experimento de competição foi realizado com sucesso mostrando a ligação do fator de transcrição p-50 à sonda contendo a seqüência consenso NFkB. Este experimento foi considerado como prova de princípio para a hipótese estudada. No segundo capítulo relata-se o desenvolvimento de um método para a detecção e monitoramento in vitro de atividade nucleotídeo-trifosfatase. O método que se mostrou robusto e reprodutível foi aplicado para investigar a atividade GTPase de uma proteína recombinante contendo o domínio catalítico de uma septina humana SEPT4 / Bradeiona (GST-rDGTPase). O exemplo de aplicação demonstra que a técnica de eletroforese capilar pode substituir o método tradicionalmente usado com marcação radioativa para detecção de atividade GTPase inclusive em estudos de cinética enzimática. Os parâmetros cinéticos determinados para a GST-rDGTPase foram: vmax = 1.7 μ M min-1 ± 0.1 and Km = 1.0 mM ± 0.3; kcat = 9 x 10-3 SM-1. O efeito de co-fatores como Mg2+ and Mn2+ também foi estudado. O método analítico descrito também se mostrou útil para a análise de di- e trifosfatos de outros nucleotídeos. / This Thesis concerns on the development of capillary electrophoresis-based bioanalytical methods for two distinct applications: DNA-protein binding analysis and monitoring of enzyme-catalyzed GTP hydrolysis. In the first chapter, the feasibility of on-chip electrophoretic mobility-shift assays (EMSA) is investigated. Purified transcription factors c-Jun(AP1) and p-50(NFkB) were used for binding studies to dsDNA probes containing the consensus sequences from AP1, NFkB and AP2 regulatory sequences. DNA probes were modified at the 5?-end with the Cy5 and unlabeled oligos were used for competition experiments. On-chip-EMSA could be carried out within ca. 2 h with low sample consumption and no need to handle radioactive material. Both, the dsDNA probes and the shifted oligos from binding reactions were analyzed on the ?2100 Bioanalyzer? using either, the standard procedure for DNA analysis or a modified protocol, in which no intercalating dye was used. Instead, 4.9 nM Cy5-dCTP was added to the gel matrix allowing the detection of only Cy5-labeled DNA. Despite the need of specific adjustments for each protein, we have shown the potential for replacing slab gel-based EMSA for on-chip methods. A competition experiment to show sequence specific binding of the transcription factor p-50 to the consensus sequence NFkB is presented as a proof of principle. In chapter II, a capillary electrophoresis-based method for in vitro detection and monitoring of nucleotide-triphosphatase activity is described. This robust and reproducible method was used to investigate GTPase activity of a recombinant protein construct containing the catalytic domain of Human SEPT4 /Bradeion ? (GST-rDGTPase). The application example demonstrates that the capillary electrophoresis technique can replace classical radioactive methods for GTPase activity assays and may be used as a routine analytical tool. Enzyme kinetics of GST-rDGTPase was studied and yielded the following kinetic parameters: vmax = 1.7 μM min-1 ± 0.1 and Km = 1.0 mM ± 0.3; kcat = 9 x 10-3 s-1. In addition the effect of co-factors such as Mg2+ and Mn2+ in the catalytic activity was investigated. The described analytical method was also shown to be useful to analyze di- and triphosphated forms of other nucleotides.

La protéine TAT1 (Testis Anion Transporter 1 ; SLC26A8) appartient à la famille des SLC26, une famille de transporteurs d’anions qui contribuent dans différents épithelia à l’homéostasie cellulaire. La protéine TAT1 s’exprime exclusivement dans les cellules germinales mâles, chez l’homme et chez la souris. Sur le spermatozoïde mature, la protéine TAT1 est localisée à la jonction des pièces intermédiaire (PI) et principale (PP) du flagelle, au niveau de l’annulus, une structure en forme d’anneau composée de différents polymères de Septines (1, 4, 6, 7 et 12).Le modèle murin d’invalidation du gène Tat1 présente une infertilité mâle par asthénozoospermie totale (absence de mobilité des spermatozoïdes) et des défauts de capacitation associés à des anomalies structurales du flagelle (plicature du flagelle, disjonction entre la PI et la PP, atrophie de l’annulus). Ce modèle indique que la protéine TAT1 pourrait avoir un rôle structural dans le maintien de l’annulus et dans la mise en place du flagelle. Par ailleurs, la protéine TAT1 possédant une activité de transport d’anions, il est vraisemblable qu’elle puisse influer directement sur la régulation de la mobilité et de la capacitation puisqu’il est bien établi que les échanges ioniques sont essentiels au contrôle de ces deux processus.En effet, les ions chlorure, bicarbonate et calcium participent à l’activation de la voie de signalisation AMPc/PKA, au cours des processus de mobilité et de capacitation (i.e. processus de maturation ayant lieu dans le tractus génital féminin et conférant au spermatozoïde un mouvement hyperactivé et la capacité à interagir avec l’ovocyte).Plusieurs travaux ont montré une interaction physique et fonctionnelle des membres de la famille SLC26 avec le canal chlorure/bicarbonate CFTR (Cystic Fibrosis Transmembrane conductance Regulator) dont les mutations sont responsables de la mucoviscidose. De manière intéressante des données récentes ont montré l’expression de CFTR dans le spermatozoïde et son rôle dans la régulation des flux de chlorure au cours de la capacitation. Au cours de ma thèse, nous avons testé la coopération entre les protéines TAT1 et CFTR ; nous avons pu montrer que la protéine TAT1 est capable d’interagir physiquement avec CFTR et de stimuler son activité de transport d’anions, suggérant qu’in vivo les deux protéines forment un complexe moléculaire impliqué dans la régulation des flux de chlorure et de bicarbonate dans le spermatozoïde.Tout comme TAT1, plusieurs membres de la famille SLC26 ont une expression tissulaire spécifique. Par ailleurs, les mutations génétiques de certains SLC26 sont associées à des pathologies humaines (surdité, diarrhée chlorurée congénitale et chondrodysplasie). De par le phénotype du modèle murin Tat1 et l’importance des SLC26 en pathologie humaine, TAT1 constitue un bon candidat dans la recherche des causes génétiques des asthénozoospermies humaines.Le laboratoire a mis en place au cours de ma thèse, un projet de recherche de mutations du gène TAT1 dans les asthénozoospermies humaines. Le séquençage des régions codantes du gène TAT1 dans une cohorte de 147 hommes infertiles par asthénozoospermie a ainsi permis d’identifier des variations de séquence inédites du gène chez 7 sujets. L’étude in vitro de certains variants indique pour trois d’entre eux une instabilité des formes mutantes associée à un défaut de stimulation du canal CFTR, in vitro. Par ailleurs, les spermatozoïdes de ces patients présentent d’importantes anomalies flagellaires dans la mise en place de la pièce intermédiaire, compatible avec un rôle de la protéine TAT1 et de ses partenaires (les septines) dans la genèse du flagelle / TAT1 (Testis Anion Transporter 1 ; SLC26A8) belongs to the SLC26 family of anion transporters, which is implicated in cellular homeostasis of different epithelia. TAT1 is exclusively expressed in male germ cells, in human and mouse. On mature spermatozoa, TAT1 is located at the annulus, a ring-shaped structure composed of different septins polymers (1, 4, 6, 7 and 12), at the junction of the midpiece (MP) and principal piece (PP) of the flagellum.The knock-out mouse model of Tat1 gene shows a male infertility by complete asthenozoospermia (lack of sperm motility) and capacitation defects combined with flagellar structural abnormalities (flagella bending, MP and PP disjunction and atrophy of the annulus). This model suggests that the TAT1 protein could fulfill structural roles in the annulus and during flagellum biogenesis. Moreover TAT1 displayind an anion transport activity, it could also be implicated in the control of sperm motility and capacitation by regulating anions exchannges, which are well known to be essential for both processes.Indeed, chloride, bicarbonate and calcium ions are involved in the activation of the cAMP/PKA pathway, controlling sperm motility and capacitation processes (i.e. maturation events occuring in the female genital tract and providing the spermatozoa an hyperactivation movement and the ability to interact with oocyte).Several publications have reported a physical and functionnal interaction between SLC26 family members and the chloride/bicarbonate CFTR channel (Cystic Fibrosis Transmembrane conductance Regulator), which mutations are responsible of cystic fibrosis. Interestingly, recent data showed CFTR expression in spermatozoa and its role in the regulation of chloride fluxes during capacitation. During my thesis, we tested TAT1 and CFTR cooperation; we showed that TAT1 can interact physically with CFTR and stimulate its anion transport activity, suggesting that in vivo they form a molecular complex involved in the regulation of chloride and bicarbonate fluxes during sperm capacitation.Like TAT1, several SLC26 family members have a tissue specific expression. Furthermore genetic mutations in several SLC26 members result in human pathology such as deafness, congenital chloride diarrhea and chondrodysplasia. According to the phenotype of the KO Tat1 mouse model and the role of SLC26 members in human pathology, TAT1 constitutes a good candidate for the search of genetic causes of human asthenozoospermia.During my thesis, the laboratory has set up, a research project aiming at identifying mutations in the TAT1 gene that are responsible for human asthenozoospermia.Sequencing of the TAT1 gene coding regions in a cohort of 147 infertile men presenting with asthenozoospermia allowed us to identify several new sequence variations in in the TAT1 gene. In vitro study of these variants shows that 3 of them are associated with protein instability and abrogate CFTR stimulation. Besides, patients sperm show important flagellar abnormalities in the midpiece, consistent with a role of TAT1 and its partners (septins) in flagellum biogenesis.

Esta tese trata do desenvolvimento de métodos bioanalíticos, baseados na técnica de eletroforese capilar, para duas aplicações distintas: a análise de complexos formados pela ligação entre proteínas e DNA e detecção e monitoramento de hidrólise de GTP catalisada por enzimas. No primeiro capítulo descreve-se uma investigação sobre a viabilidade de ensaios tipo EMSA (?electrophoretic mobility shift assay?) em chips com microcanais para eletroforese. Os fatores de transcrição purificados c-Jun(AP1) e p-50(NFkB) foram usados nos estudos de ligação a sondas de DNA fita dupla contendo as seqüências consenso de ligação dos fatores AP1, NFkB e AP2. As sondas de DNA sintéticas continham como modificação a marcação com o corante fluorescente Cy5 ligado à extremidade 5?, sendo que as mesmas seqüências não marcadas foram usadas para experimentos de competição. Ensaios tipo EMSA em chip puderam ser realizados em cerca de 2 h com baixo consumo de amostra e sem a necessidade de usar marcação com material radioativo. A sondas de DNA e os complexos formados nas reações de ligação foram analisados no Bioanalyzer usando tanto o procedimento padrão para a análise de DNA quanto um protocolo modificado. Nesta modificação não foi usado corante de intercalação mas 4,9 nM de Cy5-dCTP que foi adicionado ao gel, permitindo apenas a detecção de DNA previamente marcado. Apesar da necessidade de ajustes no método para cada proteína testada, foi mostrado o potencial de se substituir o método de EMSA em gel por métodos baseados em eletroforese em chip. Um experimento de competição foi realizado com sucesso mostrando a ligação do fator de transcrição p-50 à sonda contendo a seqüência consenso NFkB. Este experimento foi considerado como prova de princípio para a hipótese estudada. No segundo capítulo relata-se o desenvolvimento de um método para a detecção e monitoramento in vitro de atividade nucleotídeo-trifosfatase. O método que se mostrou robusto e reprodutível foi aplicado para investigar a atividade GTPase de uma proteína recombinante contendo o domínio catalítico de uma septina humana SEPT4 / Bradeiona (GST-rDGTPase). O exemplo de aplicação demonstra que a técnica de eletroforese capilar pode substituir o método tradicionalmente usado com marcação radioativa para detecção de atividade GTPase inclusive em estudos de cinética enzimática. Os parâmetros cinéticos determinados para a GST-rDGTPase foram: vmax = 1.7 μ M min-1 ± 0.1 and Km = 1.0 mM ± 0.3; kcat = 9 x 10-3 SM-1. O efeito de co-fatores como Mg2+ and Mn2+ também foi estudado. O método analítico descrito também se mostrou útil para a análise de di- e trifosfatos de outros nucleotídeos. / This Thesis concerns on the development of capillary electrophoresis-based bioanalytical methods for two distinct applications: DNA-protein binding analysis and monitoring of enzyme-catalyzed GTP hydrolysis. In the first chapter, the feasibility of on-chip electrophoretic mobility-shift assays (EMSA) is investigated. Purified transcription factors c-Jun(AP1) and p-50(NFkB) were used for binding studies to dsDNA probes containing the consensus sequences from AP1, NFkB and AP2 regulatory sequences. DNA probes were modified at the 5?-end with the Cy5 and unlabeled oligos were used for competition experiments. On-chip-EMSA could be carried out within ca. 2 h with low sample consumption and no need to handle radioactive material. Both, the dsDNA probes and the shifted oligos from binding reactions were analyzed on the ?2100 Bioanalyzer? using either, the standard procedure for DNA analysis or a modified protocol, in which no intercalating dye was used. Instead, 4.9 nM Cy5-dCTP was added to the gel matrix allowing the detection of only Cy5-labeled DNA. Despite the need of specific adjustments for each protein, we have shown the potential for replacing slab gel-based EMSA for on-chip methods. A competition experiment to show sequence specific binding of the transcription factor p-50 to the consensus sequence NFkB is presented as a proof of principle. In chapter II, a capillary electrophoresis-based method for in vitro detection and monitoring of nucleotide-triphosphatase activity is described. This robust and reproducible method was used to investigate GTPase activity of a recombinant protein construct containing the catalytic domain of Human SEPT4 /Bradeion ? (GST-rDGTPase). The application example demonstrates that the capillary electrophoresis technique can replace classical radioactive methods for GTPase activity assays and may be used as a routine analytical tool. Enzyme kinetics of GST-rDGTPase was studied and yielded the following kinetic parameters: vmax = 1.7 μM min-1 ± 0.1 and Km = 1.0 mM ± 0.3; kcat = 9 x 10-3 s-1. In addition the effect of co-factors such as Mg2+ and Mn2+ in the catalytic activity was investigated. The described analytical method was also shown to be useful to analyze di- and triphosphated forms of other nucleotides.