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The aim of my Ph.D. thesis is to summarize my research on the development of ring-opening polymerization (ROP) of O-carboxyanhydrides (OCAs) to synthesize functionalized, degradable polyesters. Biodegradable polyesters are promising alternatives to conventional petroleum-based non-degradable polyolefins and they are widely used in everyday applications ranging from clothing and packaging to agriculture and biomedicine. Commercially available polyesters, such as poly(lactic-co-glycolic acid), poly(lactic acid), and polycaprolactone, hydrolyze in physicochemical media. They have been approved by FDA and widely used for medical applications. However, the lack of side-chain functionality in polyesters and in corresponding monomers greatly plagues their utility for applications that demand physicochemical properties such as high stiffness, tensile strength and elasticity. Increasing efforts have been devoted to the introduction of pendant groups along the polymer chain in order to modify and modulate the physicochemical properties of polyesters and thereby to expand their applications. Over the last decade, OCAs have emerged as an alternative class of highly active monomers for polyester polymerization. OCAs are prepared from amino acids and thus have a richer range of side chain functionalities than lactone or lactide. Like lactones, OCAs can undergo ROP to obtain polyesters. Unfortunately, current ROP methods, especially those involving organocatalysts, result in uncontrolled polymerization including epimerization for OCAs bearing electron-withdrawing groups, unpredictable molecular weights (MWs), or slow polymerization kinetics. Based on our recent success of Ni/Ir photoredox catalysis allowing for rapid synthesis of high-MWs polyesters, we further explore new polymerization chemistry to use earth-abundant metal complexes to replace expensive rare-earth metal photocatalysts, and practice the polymerization in moderate and energy-efficient reaction conditions. This thesis introduces novel photoredox and electrochemical earth-abundant metal catalysts that overcome above difficulties in the ROP chemistry of OCAs, and allow for the preparation of stereoregular polyesters bearing abundant side-chain functionalities in a highly controlled manner. Specifically, various highly active metal complexes have been developed for stereoselective ROP of OCAs, either using light or electricity, to synthesize syndiotactic or stereoblock copolymers with different thermal properties. Additionally, simple purification protocols of OCAs have also been initially studied, which potentially paves the way to bulk production of functional monomers. In this thesis, I first describe newly-developed photoredox Co/Zn catalysts to achieve a controlled ROP of enantiopure OCAs under mild reaction conditions (Chapter 2). Such discovery is extended to the combination use of Co catalysts with various Zn/Hf complexes that enable stereoselective controlled ROP of racemic OCAs for the preparation of stereoregular polyesters (Chapter 3). The mechanistic studies of the aforementioned developments lead to the application of such a catalytic system in controlled electrochemical ROP of OCAs (Chapter 4). Such chemistry can also be translated to stereoselectively electrochemical ROP of racemic OCAs to either syndiotactic or stereoblock polyesters, allowing precise control of polyester's tacticity and sequence (Chapter 5). An overview future work has been summarized (Chapter 6). / Doctor of Philosophy / Polyesters are widely used in everyday applications ranging from clothing and packaging to agriculture and biomedicine. Different from conventional unrecyclable plastics, polyesters are usually biocompatible and biodegradable, and can be synthesized from renewable resources. A few commercially available polyesters have been approved by FDA and widely used for medical applications. However, their utility for applications that demand various mechanical and chemical properties is greatly limited by the lack of side-chain functional groups in polyesters and in their monomers—lactones. Increasing efforts have been devoted to the introduction of pendant groups along the polymer chain in order to modify and modulate the desired properties of polyesters and thereby to expand their applications. Over the last decade, O-carboxyanhydrides (OCAs) have emerged as an alternative class of highly active monomers for polyester polymerization. OCAs can be prepared from renewable source amino acids and thus have a richer range of side chain functional groups. Like lactones, OCAs can undergo ring-opening polymerization (ROP). Unfortunately, current ROP methods usually result in uncontrolled polymerization of OCAs including loss of stereoregularity, unpredictable molecular weights, or slow polymerization rate. To address the above-described polymer chemistry and materials challenges, I have been motivated to develop a new polymer chemistry knowledge base when starting my Ph.D. program. I was first involved in the development of a controlled photoredox polymerization of OCAs produces polyesters with various side chain functional groups. By using photoredox Ni/Zn/Ir catalysts, stereoregular high molecular weight polyesters can be synthesized from racemic OCAs in a rapid, controlled manner. However, this catalytic system has to be used at -20 °C despite so successful in preparing stereoblock polyesters. Encouraged by our recent success in this area, I started to work on the discovery of other transition metal complexes such as the Co complexes used in N-carboxyanhydride polymerization. Ultimately, innovative photoredox Co/Zn catalysts has been successfully developed, and applied to our protocol to achieve the controlled ROP of enantiopure OCAs under mild reaction condition (Chapter 2). The Co catalyst can replace both Ni and Ir in aforementioned photoredox system. Meanwhile, the combination of Co catalysts and various Zn/Hf complexes has also been developed to undergo photoredox ROP of racemic OCAs to efficiently produce polyesters with different microstructures (Chapter 3). Although photoredox ROP is an efficient method for synthesizing degradable polyesters, great decrease in photonic flux with the depth of the reaction medium makes it less energy efficient compared to electricity. Therefore, we then extended our protocol to electrochemical reaction, which is one of the most energy-efficient chemical reactions. The newly identified Co/Zn catalytic system can be activated by electric current to mediate rapid electrochemical ROP (eROP) of enantiopure OCAs, allowing for the synthesis of isotactic polyesters in a highly controlled manner (Chapter 4). Additionally, stereoselective eROP of racemic OCAs has been firstly achieved by using various combinations of Co and Zn/Hf complexes (Chapter 5). In summary, my research produces unique and transformative insights into the innovative photoredox and electrochemical ROP mediated by metal catalysts. Given the importance and versatility of biodegradable and biocompatible polyester materials, the chemistry invented by our team can be expected to serve as a new platform for various applications in material and biomedical engineering.

The aim of this thesis is to modify and improve the n-type semiconducting polymer PNDIT2 for thermoelectric generators (TEGs) applications. Although the PNDIT2 is considered a prime n-type material due to its high electron mobility, low air-stability of radical anions after doping and the low doping efficiency with molecular dopants are severe drawbacks and lead to limited application in TEGs. To this end, the backbone structure of PNDIT2 is modified by polymer analogous thionation and the branched aliphatic side chains are replaced by branched, fully oligoethylene glycol-based side chains. PNDIT2 was prepared by DAP and subjected to various conditions of thionation. The polymer analogous thionation of PNDIT2 was done by using Lawesson´s reagent (LR). The O/S conversion was controlled by solvent, T and amount of LR. For an excess of LR, only two carbonyls out of four present in the NDI repeating unit are converted to thiocarbonyls with regioselective trans-conformation (2S-trans-PNDIT2). Chlorobenzene (CB) is an excellent solvent in which the highest O/S conversion was achieved and the best reproducibility. Tri- or tetra- substitution in one NDI repeat unit did not take place due to steric hinderance of T2 comonomer. Thionation affected all properties. The lower thermal stability, UV-vis spectra were bathochromically shifted and a new band of the thionated NDI unit appeared. Chain aggregation was stronger as probed by UV-vis and NMR spectroscopy. The LUMO energy level of 2S-trans-PNDIT2 was lowered by 0.2 eV, giving -4.0 eV. This is at the border of what is needed for air stability of radical anions. The scattering on thin films indicated lower order and less crystalline textures of 2S-trans-PNDIT2 compared to PNDIT2. Likewise, electron mobility decreased with increasing conversion. While chapter 2 focused on the synthesis, opto-electronic and thermal properties of 2S-trans-PNDIT2, chapter 3 was concerned with details on morphology and electrical properties. To this end, 2S-trans-PNDIT2 was doped by N-DPBI in toluene at various concentrations and conductivities were determined. Undoped 2S-trans-PNDIT2 exhibited one order of magnitude higher conductivity than pristine PNDIT2. After doping with 5 wt.-% N-DPBI, the conductivity of 2S-trans-PNDIT2 increased by two orders of magnitude and reached a maximum conductivity of 6*10-3 S/cm at 15 wt.-% doping. This value was approx.5 times higher than the conductivity of PNDIT2 at the same doping level. Furthermore, the stability of conductivity of doped 2S-trans-PNDIT2 under ambient conditions was investigated and compared to PNDIT2. Upon exposure air (50 % humidity), conductivity of PNDIT2 rapidly decreased to the pristine film level, while the conductivity of 2S-trans-PNDIT2 was reduced by a factor of less than two after 16 h. While the initially higher conductivity of 2S-trans-PNDIT2 is ascribed to its less crystalline structure and thus higher doping efficacy, its better stability can be ascribed to the lower LUMO energy level. The topic of chapter 4 is on the synthesis of fully ether-based, polar and branched side chains (EO) and introduction into PNDIT2. The advantages of polar side chains over aliphatic side chains have been reported. However, previously reported PNDIT2 with linear polar side chains is limited in MW due to solubility. The EO side chain with amine functionality was synthesized in three steps and used for monomer synthesis (EO-NDIBr2). Initial efforts to use DAP to prepare P(EO-NDIT2) from EO-NDIBr2 and pristine bithiophene gave only oligomeric products. Stille polycondensation was therefore used, giving high MW. As extreme aggregation occurred in solvents used for GPC, absolute MW were determined by 1H NMR spectroscopy. To enable reliable end group analysis, model compounds with methyl end groups were prepared. In P(EO-NDIT2), methyl end groups are dominating as a result of incorrect transmetalation from the stannylated monomer. The end groups seen by 1H NMR spectroscopy were further confirmed by MALDI-ToF. Absolute MW were between Mn,NMR= 11 kg/mol to 116 kg/mol depending on reaction conditions. Aggregation was further probed by UV-vis and NMR spectroscopy as a function of the solvent and temperature, shining light into the degree of aggregation, which is important for thin film preparation. Solvent quality decreased with the following order: CHCl3, 1-Chloronaphthalene (CN), 1,2-Dichlorobenzene (o-DCB), DMF, 1,4-Dioxane, CB and Anisole (AN). According to these results, three doping protocols based on CB and o-DCB, as well as temperature variations, were used to prepare films for conductivity measurements. The best results were obtained for processing from chlorobenzene at 80 °C, which aggregates are dissolved. Strikingly, maximum conductivity values were achieved already for 5 wt.-% dopant concentration. The PF reached a maximum even for 1 wt.-% doping level. This unusually low value is promising and suggests a high doping efficacy.

La production de membranes échangeuses de protons (PEM) robustes et présentant une conductivité élevée est essentielle pour le développement à grande échelle de dispositifs de stockage et de conversion de l’énergie tels que les piles à combustible (PEMFC) et les électrolyseurs (PEMWE). Ces travaux de thèse portent sur la préparation et la caractérisation de membranes composites préparées à partir d’acide perfluorosulfonique, à chaine latérale courte (SSC-PFSA), de type Aquivion®, et de fibres de polymères obtenues par filage électrostatique. Cette dernière technique permet de préparer des matériaux fibreux à porosité élevée, caractérisés par la présence de fibres de diamètres sub-micrométriques, et pouvant être utilisés comme renfort mécanique des membranes ionomères. Le polysulfone a été retenu comme constituant des fibres étant donné ses stabilités mécanique et chimique élevées d’une part et pour la possibilité de modifier ses propriétés physico-chimiques par fonctionnalisation, d’autre part. Ces membranes comportant une distribution homogène des nanofibres dans toute leur épaisseur ont été préparées à partir d’un procédé d’imprégnation Des membranes renforcées, Aquivion®-PSU, basées sur un PFSA dont le poids équivalent (EW) varie entre 700 et 870 g.mol-1 et dont la concentration massique de fibres varie entre 5 et 18 %, ont été préparées. Les membranes renforcées sont caractérisées par des faibles gonflements volumique et surfacique et par une rigidité plus élevée en comparaison des membranes non renforcées de même EW. La perméabilité a l’hydrogène a engluement été réduite. Les améliorations en terme de propriétés mécaniques et dimensionnelles n’ont pas amené à une diminution significatif de la conductivité protonique, qui été maintenue aux mêmes valeurs des membranes non renforcée. Les assemblage membrane-électrode (AME) préparés à partir de ces membranes composites ont montré des caractéristiques i/V intéressantes et prometteuses (1.76 V à 2 A/cm²).Des Polysulfones fonctionnalisés avec le 1,2,3 triazole portant des groupements alkyle ou aryle ont été préparés par une voie de synthèse rapide et a haute rendement assistée par micro-ondes. Les nanofibres electrofilées de PSU fonctionnalisé avec le 4-ethyl-1,2,3-triazole (PSUT), avec un degré de fonctionnalisation en espèce triazole de 0.3 et 0.9 par unité répétitive de PSUT ont été intégrées à une matrice Aquivion®. L’objectif de ces travaux est d’améliorer la stabilité mécanique des membranes composites à partir des interactions acido-basiques PFSA-PSUT (réticulation ionique). Les membranes Aquivion®-PSUT sont caractérisées par une rigidité, une dureté et une ductilité plus élevées en comparaison des membranes Aquivion® renforcées par les fibres de PSU non fonctionnalisées. Une diminution du gonflement volumique et surfacique a également été observée sans perte de la conductivité jusqu’à une concentration massique de fibres de 12 %. Les AME préparés à partir de membranes renforcées Aquivion®-PSUT (12%) sont caractérisés par les mêmes propriétés courant/tension, en monocellule de pile à combustible fonctionnant à 80 °C et 100 % d’humidité relative, que ceux préparés à partir d’Aquivion®. / The preparation of highly proton conducting and durable proton exchange membranes (PEM) for low temperature fuel cells (PEMFC) and electrolysers (PEMWE) is crucial for the large scale application of these energy conversion/storage devices. This PhD thesis focuses on the preparation and characterisation of composite membranes based on highly conducting Aquivion® short side chain perfluorosulfonic acid (PFSA) and polymer fibres obtained by electrospinning. This technique allows the preparation of highly porous mats of fibres with sub-micrometric diameters that can act as an efficient mechanical reinforcement for ionomer membranes. The chosen polymer is the mechanically robust and chemically stable polysulfone (PSU), which can also been functionalised to modify its physico-chemical properties. Reinforced PEM with fibres homogeneously dispersed through the entire membrane cross-section have been realised by a fast and efficient impregnation process.Aquivion®-PSU reinforced membranes based on PFSA with equivalent weight (EW) ranging from 700 to 870 g mol-1 and fibre loading ranging from 5 to 18 wt% have been prepared. They showed reduced volume and area swelling and higher stiffness with respect to non-reinforced membranes with the same EW. The hydrogen crossover was also reduced. The improvement in mechanical and dimensional properties was not detrimental for the in-plane proton conductivity that was kept at the same value of non-reinforced membranes. Membrane-electrode assemblies (MEA) based on these composite PEM show promising i/V characteristics in PEMWE (1.76 V at 2 A cm-2).Polysulfones functionalised with 1,2,3-triazole bearing alkyl and aryl ring substituents have been synthesized by a fast and high-yield chemical route involving the azide-alkyne cycloaddition reaction assisted by microwaves as last step. Electrospun nanofibers of polysulfone functionalised with 4-epthyl-1,2,3-triazole (PSUT) with a degree of functionalisation of 0.3 and 0.9 triazole moiety per PSUT repeat unit have been embedded into the Aquivion® matrix. The aim of this study was to further improve the mechanical properties of the membrane by PFSA-PSUT acid-base interactions (ionic crosslinking). Aquivion®-PSUT membranes showed enhanced mechanical stiffness, toughness and ductility with respect to Aquivion® membranes reinforced with the non-functionalised polymer with the same EW and fibre loading. Reduced volume and area swelling have also been observed with no drop of proton conductivity until a fibre loading of (12 wt%). MEA based on Aquivion®-PSUT reinforced membrane with 12 wt% fibre loading showed identical fuel cell polarisation curve with respect to a MEA based on Aquivion® at 80 °C and 100 % of relative humidity (RH).

The photosensitive unit triggering the negative phototaxis in the haloarchaeum Natronomonas pharaonis consists of the receptor sensory rhodopsin II (NpSRII) and its cognate transducer (NpHtrII) in a 2:2 stoichiometry. Upon light excitation, a structural rearrangement in the receptor initiates a displacement/rotation of the transducer helix TM2, which can be considered as starting event for the signal transduction. This signal is further transmitted to the cytoplasmic signaling domain through the signal transduction unit comprising two HAMP domains.Structural information already exists for the transmembrane region of this complex (crystal structure) as well as for the rod shaped cytoplasmic part of NpHtrII due to its high homologies with chemoreceptors. Moreover, the solution NMR structure of the isolated HAMP domain from A. fulgidus recently obtained shows a homodimeric, four-helical, parallel coiled-coil with an unusual interhelical packing, that is thought to propagate a signal by virtue of concerted helix rotations. Here, an electron paramagnetic resonance (EPR) investigation of site-directed spin labeled transducers in the NpSRII/NpHtrII complex has been carried out for structural and functional elucidation of the N. pharaonis HAMP. For this purpose, cw as well as pulse EPR techniques have been used in terms of mobility, accessibility and intra-transducer dimer distance analyses. Conformational changes induced by environmental inputs, namely salt, temperature and pH, give insight into the two-state equilibrium existing between a highly dynamic (dHAMP) and a more compact (cHAMP) conformation of this linker region.

Protein structure predication is a field of computational molecular modeling with an enormous potential for improvement. Side-chain geometry prediction is a critical component of this process that is crucial for computational protein structure predication as well as crystallographers in refining experimentally determined protein crystal structures. The cornerstone of side-chain geometry prediction are side-chain rotamer libraries, usually obtained through exhaustive statistical analysis of existing protein structures. Little is known, however, about the driving forces leading to the preference or suitability of one rotamer over another. Construction of 3D hydropathic interaction maps for nearly 30,000 tyrosines extracted from the PDB reveals their environments, in terms of hydrophobic and polar (collectively “hydropathic”) interactions. Using a unique 3D similarity metric, these environments were clustered with k-means. In the ϕ, ψ region (–200° < ϕ < –155°; –205° < ψ < –160°) representing 631 tyrosines, clustering reduced the set to 14 unique hydropathic environments, with most diversity arising from favorable hydrophobic interactions. Polar interactions for tyrosine include ubiquitous hydrogen bonding with the phenolic OH and a handful of unique environments surrounding the backbone. The memberships of all but one of the 14 environments are dominated by a single χ1/χ2 rotamer. Each tyrosine residue attempts to fulfill its hydropathic valence. Structural water molecules are thus used in a variety of roles throughout protein structure. A second project involves elucidating the 3D structure of CRIP1a, a cannabinoid 1 receptor (CB1R) binding protein that could provide information for designing small molecules targeting the CRIP1a-CB1R interaction. The CRIP1a protein was produced in high purity. Crystallization experiments failed, both with and without the last 9 or 12 amino acid peptide of the CB1R C-terminus. Attempts were made to use NMR for structure determination; however, the protein precipitated out during data acquisition. A model was thus built computationally to which the CB1R C-terminus peptide was docked. HINT was used in selecting optimum models and analyzing interactions involved in the CRIP1a-CB1R complex. The final model demonstrated key putative interactions between CRIP1a and CB1R while also predicting highly flexible areas of the CRIP1a possibly contributing to the difficulties faced during crystallization.

Das homotrimere Tailspikeadhäsin des Bakteriophagen P22 ist ein etabliertes Modellsystem, dessen Faltung, Assemblierung und Stabilität in vivo und in vitro umfassend charakterisiert ist. Das zentrale Strukturmotiv des Proteins ist eine parallele beta-Helix mit 13 Windungen, die von einer N‑terminalen Kapsidbindedomäne und einer C‑terminalen Trimerisierungsdomäne flankiert wird. Jede Windung beinhaltet drei kurze beta-Stränge, die durch turns und loops unterschiedlicher Länge verbunden sind. Durch den sich strukturell wiederholenden, spulenförmigen Aufbau formen beta-Stränge benachbarter Windungen elongierte beta-Faltblätter. Das Lumen der beta-Helix beinhaltet größtenteils hydrophobe Seitenketten, welche linear und sehr regelmäßig entlang der Längsachse gestapelt sind. Eine hoch repetitive Struktur, ausgedehnte beta-Faltblätter und die regelmäßige Anordnung von ähnlichen oder identischen Seitenketten entlang der beta-Faltblattachse sind ebenfalls typische Kennzeichen von Amyloidfibrillen, die bei Proteinfaltungskrankheiten wie Alzheimer, der Creutzfeld-Jakob-Krankheit, Chorea Huntington und Typ-II-Diabetes gebildet werden. Es wird vermutet, dass die hohe Stabilität des Tailspikeproteins und auch die der Amyloidfibrille durch Seitenkettenstapelung, einem geordneten Netzwerk von Wasserstoffbrückenbindungen und den rigiden, oligomeren Verbund bedingt ist. Um den Einfluss der Seitenkettenstapelung auf die Stabilität, Faltung und Struktur des P22 Tailspikeproteins zu untersuchen, wurden sieben Valine in einem im Lumen der beta-Helix begrabenen Seitenkettenstapel gegen das kleinere und weniger hydrophobe Alanin und das voluminösere Leucin substituiert. Der Einfluss der Mutationen wurde anhand zweier Tailspikevarianten, dem trimeren, N‑terminal verkürzten TSPdeltaN‑Konstrukt und der monomeren, isolierten beta-Helix Domäne analysiert. Generell wurde in den Experimenten deutlich, dass Mutationen zu Alanin stärkere Effekte auslösen als Mutationen zu Leucin. Die dichte und hydrophobe Packung im Kern der beta-Helix bildet somit die Basis für Stabilität und Faltung des Proteins. Anhand hoch aufgelöster Kristallstrukturen jeweils zweier Alanin‑ und Leucin‑Mutanten konnte verdeutlicht werden, dass das Strukturmotiv der parallelen beta-Helix stark formbar ist und mutationsbedingte Änderungen des Seitenkettenvolumens durch kleine und lokale Verschiebung der Haupt‑ und Seitenketten ausgeglichen werden, sodass mögliche Kavitäten gefüllt und sterische Spannung abgebaut werden können. Viele Mutanten zeigten in vivo und in vitro einen temperatursensitiven Faltungsphänotyp (temperature sensitive for folding, tsf), d.h. bei Temperaturerhöhung waren die Ausbeuten des N‑terminal verkürzten Trimers im Vergleich zum Wildtyp deutlich verringert. Weiterführende Experimente zeigten, dass der tsf‑Phänotyp durch die Beeinflussung unterschiedlicher Stadien des Reifungsprozesses oder auch durch die Verminderung der kinetischen Stabilität des nativen Trimers ausgelöst wurde. Durch Untersuchungen am vollständigen und am N‑terminal verkürzten Wildtypprotein wurde gezeigt, dass die Entfaltungsreaktion des Tailspiketrimers komplex ist. Die Verläufe der Kinetiken folgen zwar einem apparenten Zweizustandsverhalten, jedoch sind bei Darstellung der Entfaltungsäste im Chevronplot die Abhängigkeiten der Geschwindigkeitskonstanten vom Denaturierungsmittel nicht linear, sondern in unterschiedliche Richtungen gewölbt. Dieses Verhalten könnte durch ein hoch energetisches Entfaltungsintermediat, einen breiten Übergangsbereich oder parallele Entfaltungswege hervorgerufen sein. Mit Hilfe der monomeren, isolierten beta-Helix Domäne, bei der die N‑terminale Capsidbindedomäne und die C‑terminale Trimerisierungsdomäne deletiert sind und welche als unabhängige Faltungseinheit fungiert, wurde gezeigt, dass alle Mutanten im Harnstoff‑induzierten Gleichgewicht analog zum Wildtypprotein einem Zweizustandsverhalten mit vergleichbaren Kooperativitäten folgen. Die konformationellen Stabilitäten von in der beta-Helix zentral gelegenen Alanin‑ und Leucin‑Mutanten sind stark vermindert, während Mutationen in äußeren Bereichen der Domäne keinen Einfluss auf die Stabilität der beta-Helix haben. Bei Verlängerung der Inkubationszeiten der Gleichgewichtsexperimente konnte die langsame Bildung von Aggregaten im Übergangsbereich der destabilisierten Mutanten detektiert werden. Die in der Arbeit erlangten Erkenntnisse lassen vermuten, dass die isolierte beta-Helix einem für die Reifung des Tailspikeproteins entscheidenden thermolabilen Faltungsintermediat auf Monomerebene sehr ähnlich ist. Im Intermediat ist ein zentraler Kern, der die Windungen 4 bis 7 und die „Rückenflosse“ beinhaltet, stabilitätsbestimmend. Dieser Kern könnte als Faltungsnukleus dienen, an den sich sequenziell weitere Helixwindungen anlagern und im Zuge der „Monomerreifung“ kompaktieren. / The homotrimeric tailspike adhesin of bacteriophage P22 is a widely used model system for studying different aspects of multi-domain protein folding, assembly and stability, both in vivo and in vitro. The central domain of the tailspike protein is a 13-turn right-handed parallel beta-helix, flanked by an N-terminal capsid-binding domain and a C-terminal trimerization domain. In the beta-helix motif the polypeptide backbone winds up to form a right-handed helix, with each coil consisting of three short beta-strands connected by turns and loops of varying lengths. Due to this repetitive and solenoidal structure, beta-strands of adjacent coils participate in building up three elongated beta-sheets. The internal lumen of the beta-helix is tightly packed and contains mostly hydrophobic side-chains, which are stacked along the helical axis in a linear and very regular manner. A highly repetitive structure, elongated beta-sheets and stacking of similar or identical side chains along the beta-sheet axis are also typical characteristics of amyloid fibrils, which are associated with protein folding diseases such as Alzheimer’s disease, Creutzfeldt-Jacob disease, Huntington’s disease and type II diabetes. It is assumed that the high stability of both, the tailspike protein and amyloid fibrils, is determined by side chain stacking, a well‑ordered network of H-bonds and the rigid, oligomeric state. To systematically investigate the influence of side chain stacking for stability, folding and structure of the P22 tailspike protein, a hydrophobic stack located in the lumen of the beta-helix domain was subjected to site-directed mutagenesis. Each of seven valine residues, distributed over the whole length of the beta-helix domain, was substituted by the smaller and less hydrophobic alanine and the bulkier leucine. The influence of these substitutions was investigated with the help of two tailspike protein constructs, namely the N-terminally shortened TSPdeltaN construct and the isolated, monomeric BHX construct. In general, almost all experiments showed that alanine mutations cause a stronger effect than leucine mutations, which demonstrates that the tight and hydrophobic packing in the lumen of the beta-helix domain is the basis for stability and folding of the tailspike protein. High-resolution crystal structures of two alanine and two leucine mutants revealed that the parallel beta-helix motif shows considerable plasticity. Small and local adjustments of side chains and the polypeptide backbone compensate for changes induced by the mutations, herewith potential cavities are filled and steric strain is released. Compared to the wild type, many mutations lead to a temperature sensitive for folding (tsf) phenotype in vivo and in vitro, i.e. mutations reduce folding yields of TSPdeltaN at high temperatures, but had little effect at low temperatures. Our experiments have elucidated that the tsf phenotype was caused either by an impact on different stages of the maturation process or by a reduction of the kinetic stability of the native trimer. Using TSPdeltaN and the complete wild type protein, it was shown that the tailspike trimer unfolds in a complex manner. Although unfolding kinetics exhibit a two-state behaviour, analysis of the apparent rate constants of unfolding in a Chevron plot revealed their non-linear denaturant-dependence. Typically, the natural logarithm of the apparent rate constants depend linearly on the denaturant concentration. However, in case of TSPdeltaN and the complete wild type protein, unfolding branches of the Chevron plot are curved. Such a behaviour could arise from a high energy intermediate on the unfolding pathway, a broad activation barrier or parallel unfolding pathways. The monomeric BHX construct lacks both the N-terminal and C-terminal domain. It folds into a conformation very similar to that of the -helix domain in the tailspike trimer and acts as an independent folding unit. Unfolding and refolding equilibrium transitions of mutant and wild type BHX constructs are reversible and follow a two-state behaviour with comparable cooperativities. However, conformational stabilities of alanine and leucine mutations located in the central part of the beta-helix domain are highly reduced, whereas mutations at the ends of the domain show a wild type-like stability. Furthermore, these destabilizing mutations tend to form aggregates around the transition midpoint when equilibrium experiments were incubated for longer time periods. Taken together, the results suggest that the structure of the isolated beta-helix seems to be similar to an essential, monomeric intermediate during tailspike folding. In this intermediate, a central core including coils 4 to 7 and the dorsal fin determines the stability of the whole folding unit. This core may act as a nucleus on which beta-helix coils can associate in a sequential manner and compact during maturation of the monomer.