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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Neural correlates of cognitive workload and anesthetic depth : fNIR spectroscopy investigation in humans /

Izzetoglu, Kurtulus. Onaral, Banu. January 2008 (has links)
Thesis (Ph.D.)--Drexel University, 2008. / Includes abstract and vita. Includes bibliographical references (leaves 60-65).
2

The development of web-based MRS analysis tool with T2 Correction

Yang, Ming-che 28 January 2010 (has links)
LCModel, which is performed on Linux, has been widely used for quantitative analysis of MRS. Its interface, LCMgui, converts MRS data of various formats to RAW file for LCModel analysis automatically. In this work, we had a web-based MRS analysis tool for GE MRS, GE MRS with Phase-Array and GE 2D-MRSI and improve the capability of web-based MRS analysis tool for GE 3D-MRSI, Siemens MRS/MRSI, and Philips MRS/MRSI. Meanwhile, T2 correction has been involved in the absolute quantification with LCModel. With the same echo-time, the different T2 value of each metabolite results in different degree of signal decay. In order to correct and make absolute concentrations more accurate, we exploit a factor to correct effect of different T2. Two groups of MRS data (TE = 35 and 272 ms) have been studied for comparison.
3

Développements de méthodes d'acquisition et de traitement du signal robustes aux défauts du champ magnétique pour la spectroscopie localisée par RMN / Development of robust acquisition methods and signal processing for localized NMR spectroscopy.

Bordelois Boizán, Alejandro 25 October 2013 (has links)
La spectroscopie localisée par Résonance Magnétique Nucléaire (RMN) a de nombreuses applications in vivo, car cette technique permet l'étude des métabolites endogènes. Cette thèse explore dans ce contexte diverses voies d'amélioration des données de spectroscopie. La première méthode présentée, est une méthode de correction de spectre mono-voxel. Une méthode de reconstruction pour l'imagerie spectroscopique s'appuyant sur la résolution d'un système d'équations linéaires au lieu de la transformation inverse de Fourier utilisée habituellement est ensuite proposée. Cette modification permet notamment la prise en compte des défauts du champ magnétique local. Enfin, une dernière méthode qui trouve son utilité lorsque le signal est trop faible pour permettre la quantification des signaux des métabolites ou lorsque les défauts du champ magnétique sont trop importants est développée puis validée par simulation et expérimentalement. / The selection a small region within the body is a critical requirement for in vivo NMR spectroscopy. This thesis presents different methods to optimize this selection and avoid contamination with extraneous signals even in presence of static magnetic field inhomogeneities and radiofrequency pulses imperfections.The first method presented allows for correcting single-voxel spectrum.The second reconstruction method for spectroscopic imaging is based on solving a system of linear equations instead of the inverse Fourier transform usually used.This particular modification allows taking into account defects in the local magnetic field.The last method developedallows metabolites quantificationeven when the signal is weak or when themagnetic field defects are large.
4

Particle size analysis, quantification and identification of microplastics in selected consumer products : a critical comparison of methods and analytical techniques

Renner, Kofi Omare January 2018 (has links)
Microplastics are particles that are < 5 mm in size and come from a wide range of sources. The global distribution in terrestrial and aquatic environments indicates they are likely to cause harm to living organisms. They are used in a variety of personal care products and kitchen scourers. To advance further studies, different approaches have been developed in recent years. In this research, a comparison of methods and analytical techniques were applied to characterise microplastics in two toothpastes and two facial scrubs. The analysis of microplastics was determined using light microscopy, laser diffraction, Fourier-transform infrared spectroscopy. This research reports for the first time, the application of Imaging flow cytometry to characterise microplastics, and was explored to characterise smaller sized particles in each product. The methods developed where validated by characterising particles abraded from kitchen scourers. Two market leading and three chain store brands of kitchen scourers were utilised for the characterisation of microplastics. The application of the different techniques indicated differences in the size, number and morphological characteristics of the particles analysed. The different approaches developed for particle extraction, and the analytical techniques had an apparent influence on the results produced. Currently, there are no universally accepted laboratory protocol and analytical techniques to characterise microplastics. However, this research can serve as a reference point to promote more studies on laboratory methods and analytical techniques to characterise microplastics, with the hope of understanding better these complex particles.
5

Measurement of xenon diffusing capacity by hyperpolarized 129Xe MR imaging and dynamic spectroscopy in rats with stachybotrys chartarum spore induced pneumonitis /

Abdeen, Nishard. January 1900 (has links)
Thesis (M.Sc.) - Carleton University, 2005. / Includes bibliographical references (p. 106-119). Also available in electronic format on the Internet.
6

Development and Validation of Analytical Models for Diffuse Fluorescence Spectroscopy/Imaging in Regular Geometries

Ayyalasomayajula, Kalyan Ram January 2013 (has links) (PDF)
New advances in computational modeling and instrumentation in the past decade has enabled the use of electromagnetic radiation for non-invasive monitoring of the physio-logical state of biological tissues. The near infrared (NIR) light having the wavelength range of 600 nm -1000 nm has been the main contender in these emerging molecular imaging modalities. Assessment of accurate pathological condition of the tissue under investigation relies on the contrast in the molecular images, where the endogenous contrast may not be sufficient in these scenarios. The fluorescence (exogenous) contrast agents have been deployed to overcome these difficulties, where the preferential uptake by the tumor vasculature leads to high contrast,making this modality one of the biggest contenders in small-animal and soft-tissue molecular imaging modalities. In Fluorescence diffuse optical spectroscopy/imaging, this exogenous drug is excited by NIR laser light causing the emission of the fluorescence light. The emitted fluorescence light is typically dependent on the life time and concentration of the exogenous drug coupled with physiology associated with the tissue under investigation. As there is an excitation and emission of the light,the underlying physics of the problem is described by a coupled diffusion equations. These coupled diffusion equations are typically solved by advanced numerical methods, which tend to be computationally demanding. In this work, analytical solutions for these coupled partial differential equations (PDEs) for the regular geometries for both time-domain and frequency-domain cases were developed. Till now, the existing literature has not dealt with all regular geometries and derived analytical solutions were only for couple of geometries. Here a universally acceptable generic solution was developed based on Green’s function approach that is applicable to any regular geometry. Using this, the analytical solutions for the regular geometries that is encountered in diffuse fluorescence spectroscopy/imaging were obtained. These solutions can play an important role in determining the bulk fluorescence properties of the tissue, which could act as good initial guesses for the advanced image reconstruction techniques and/or can also facilitate the calibration of experimental fluorescence data by removing biases and source-detector variations. In the second part of this work, the developed analytical models for regular geometries were validated through comparison with the established numerical models that are traditionally used in the diffuse fluorescence spectroscopy/imaging. This comparison not only validated the developed analytical models, but also showed that analytical models are capable of providing bulk fluorescence properties with at least one order of magnitude less computational cost compared to the highly optimized traditional numerical models.
7

Transtorno Depressivo Maior (TDM) com e sem sintomas psicóticos: investigação neuroquímica por espectroscopia de próton / Major depressive disorder with and without psycotic symptoms: neurochemical investigation by proton ressonance spectroscopy

Sá, Helena Pinho de 25 November 2011 (has links)
Introdução. O Transtorno Depressivo Maior (TDM) é um dos mais prevalentes e incapacitantes entre os transtornos mentais. Apesar disso, sua classificação ainda é baseada em sinais e sintomas, uma vez que suas causas e fisiopatologia ainda não foram totalmente esclarecidas. A presença de sintomas psicóticos é relativamente comum durante um episódio depressivo e está associada a particularidades clínicas e biológicas, mas é subdiagnosticada na prática clínica e os processos fisiopatológicos que caracterizam este tipo de depressão foram insuficientemente estudados, ainda mais ao se considerar a extensa literatura acerca das formas não psicóticas de depressão. O objetivo principal deste estudo foi o de investigar a neuroquímica do giro do cíngulo anterior (CA), região cerebral constituinte da neurocircuitaria relacionada à fisiopatologia do TDM, na forma psicótica deste transtorno. Para este objetivo, foram comparadas as concentrações absolutas dos metabólitos entre os grupos portadores de TDM com e sem sintomas psicóticos e controles saudáveis por meio de espectroscopia de próton por ressonância magnética de hidrogênio (1H-ERM). Secundariamente, analisou-se a interferência de variáveis sócio-demográficas e clínicas na medida desses metabólitos. Esperava-se que os pacientes com sintomas psicóticos (TDM-P) apresentassem alterações neuroquímicas tanto em relação ao grupo de controles saudáveis quanto a pacientes com depressão sem sintomas psicóticos (TDM-NP), independentemente da gravidade dos sintomas depressivos. Casuística e métodos. Os pacientes portadores de episódio depressivo maior (com e sem sintomas psicóticos), segundo o DSM-IV, foram recrutados no Hospital das Clínicas da Faculdade de Medicina de Ribeirão Preto da Universidade de São Paulo (HC-FMRP) e avaliados através da Entrevista Clínica Estruturada para o DSM-IV (SCID). A gravidade de sintomas depressivos e psicóticos, bem como o nível de funcionamento global foram avaliados por meio das escalas de Hamilton, BPRS e GAF (respectivamente). Foram coletadas informações a respeito de histórico de tentativas de suicídio, tratamento medicamentoso, comorbidades psiquiátricas e clínicas. Controles saudáveis da comunidade geral foram recrutados por convite da equipe de pesquisa. Utilizou-se 1H-ERM de voxel único, com tempo de eco (TE) curto (31ms), em campo magnético de 3 Tesla para a avaliação do CA de 20 pacientes com TDM-P, 22 com TDM-NP e 20 voluntários saudáveis. Foram analisados valores absolutos do glutamato (Glu), glutamato mais glutamina (Gln+Glu), N-acetilaspartato mais N-acetilaspartato-glutamato (NAA + NAAG), Fosforilcolina mais Glicerol-fosforilcolina (PC + GPC), mio-inositol (Myo) e Creatina (Cr). Dados sócio-demográficos e clínicos foram analisados através de ANOVA e qui-quadrado, enquanto os níveis de metabólitos foram comparados através de MANOVA. Correlações bivariadas entre dados clínicos e metabólitos foram analisadas por teste de Pearson ou Spearman. O nível de significância estatística empregado foi o de p <0,05. Resultados. Pacientes com TDM-P apresentaram menor escolaridade e pior funcionamento global, tanto em relação aos controles quanto em relação aos pacientes sem psicose. Os grupos de pacientes não diferiram entre si em relação à gravidade dos sintomas depressivos. Em relação aos metabólitos, houve diferença significativamente estatística entre os grupos diagnósticos. O grupo com TDM-P apresentou níveis de Glu inferiores tanto em relação ao grupo TDM-NP quanto ao grupo controle e níveis de PC + GPC e de NAA + NAAG inferiores ao grupo controle (a redução deste último metabólito atingindo significância estatística em nível de tendência apenas. Entre os sexos, os níveis de Glu e de NAA+NAAG dos participantes do sexo masculino foram inferiores aos do feminino. Por fim, os níveis de Glu e Gln+Glu foram inferiores no sexo masculino do TDM-P em relação aos demais grupos e os de Cr foram inferiores no sexo masculino no TDM-NP também em relação aos outros grupos. No entanto, as diferenças em relação ao sexo não atingiram significância estatística, possivelmente por limitações do tamanho amostral. Conclusão.Os níveis de metabólitos do CA sofreram interferência do diagnóstico e os resultados apontaram para efeito do sexo e da interação diagnóstico-sexo. As diferenças dos níveis de Glu, NAA+NAAG e PC+GPC entre os diagnósticos sugerem alterações de neurotransmissão glutamatérgica, metabolismo de membrana e integridade neuronal na TDM-P e corroboram os achados de outras áreas de estudo em depressão em psicose, que sugerem que a forma psicótica da depressão estaria mais associada ao estado de hipercortisolemia, e esta, por sua vez, levaria às alterações cerebrais compatíveis com as alterações encontradas no CA neste estudo. Além disso, os resultados apontam para a interferência do sexo nos níveis de Glu e NAA+NAAG, sugerindo um papel protetor dos hormônios femininos para o sistema glutamatérgico e ciclo do NAA. Ainda, este estudo não confirma hipóteses prévias de que as alterações biológicas entre os tipos de depressão seriam secundárias a maior gravidade de sintomas depressivos nos pacientes com TDM-P. / Introduction: Major depressive disorder (MDD) is one of the most prevalent and disabling of mental disorders. Nevertheless, its classification is still based on signs and symptoms, since its causes and pathophysyology has not been fully clarified. The presence of psychotic symptoms are relatively common during a depressive episode and is associated with clinical and biological peculiarities, but is underdiagnosed and its pathophysiology have been insufficiently studied, especially when considering the extensive literature on non-psychotic forms of depression. The aim of this study is to investigate the neurochemistry of the anterior cingulated gyrus (AC), a brain\'s neurocircuitry constituent related to the pathophysiology of MDD with psychosis/in the form of psychotic disorder. For this propose, we compared/ were compared the results of the metabolites between groups of patients with MDD with and without psychotic symptoms and controls by- proton resonance spectroscopy imaging of hydrogen (1rH-MRS). Secondly, the interference of socio-demographic and clinical on the cerebral metabolites. It was expected that patients with psychotic symptoms (MDD-P) present neurochemical changes in relation to the group of health controls and patients with depression without psychotic symptoms (MDD-Wo), regardless of the severity of depression symptons. Methods: The groups were diagnosed by the Structured Clinical Interview for DSM-IV (SCID). The severity of depressive and psychotic symptoms, as well as the level of overall functioning were assessed using the Hamilton Rating Scale, BPRS and GAF (respectively). We collected information about the history of suicide attempts, drug treatment, psychiatric and medical comorbidities.1\'H-MRS single voxel, with echo time (TE) short (3lms) in a magnetic field of 3.0 Tesla was used for the evaluation of CA in 20 patients with MDD-P, 22 with MDD-Wo and 20 healthy subjects. We analyzed the absolutevalues of glutamate (Glu), glutamate plus glutamine (Gln+Glu), N-acetylaspartate plus N-acetyl aspartate-glutamate (NAA+NAAG), glycerol phosphorylcholine plus phosphorylcholine plus choline (PC+GPC), myo-inositol (Myo) and creatine (Cr). Data on socio-demographic and clinical information were analyzed using ANOVA and chi-square, while the levels of metabolites were compared by MANOVA. The statistical significance level used was p <0.05. Results: Patients with MDD-P had less schooling and poorer overall functioning, both in relation to the controls as compared to patients without psychosis. Patient groups did not differ in the severity of depressive symptoms. Glu levels of MDD-P were lower than the MDD-Wo and the control group; NAA+NAAG levels of MDD-P were lower than in control and GPC+PC levels of MDDP were lower than the MDD-Wo. Between the sexes, Glu and NAA + NAAG levels of males were lower than females. Finally, Glu, Glu+Gln and Cr levels were different between the sexes within the groups. Conclusion:The group levels of metabolites of CA have been interfered with diagnosis and the effect of gender and gender-diagnosis interaction were close to be meaningful. The differences in the levels of Glu, NAA + NAAG and GPC + PC between diagnoses are possibly related to higher hypercortisolemia found in the MDD-P and the brain concentration of kynurenine metabolites imballance more similar with schizophrenia than MDD. The interference of sex for the levels of Glu and NAA + NAAG suggests a protective role of female hormones to glutamatergic system and cycle of the NAA. Still, probably the severity of the depressive episodes not implicated in the neurochemical differences between MDD-P and MDD-Wo
8

Transtorno Depressivo Maior (TDM) com e sem sintomas psicóticos: investigação neuroquímica por espectroscopia de próton / Major depressive disorder with and without psycotic symptoms: neurochemical investigation by proton ressonance spectroscopy

Helena Pinho de Sá 25 November 2011 (has links)
Introdução. O Transtorno Depressivo Maior (TDM) é um dos mais prevalentes e incapacitantes entre os transtornos mentais. Apesar disso, sua classificação ainda é baseada em sinais e sintomas, uma vez que suas causas e fisiopatologia ainda não foram totalmente esclarecidas. A presença de sintomas psicóticos é relativamente comum durante um episódio depressivo e está associada a particularidades clínicas e biológicas, mas é subdiagnosticada na prática clínica e os processos fisiopatológicos que caracterizam este tipo de depressão foram insuficientemente estudados, ainda mais ao se considerar a extensa literatura acerca das formas não psicóticas de depressão. O objetivo principal deste estudo foi o de investigar a neuroquímica do giro do cíngulo anterior (CA), região cerebral constituinte da neurocircuitaria relacionada à fisiopatologia do TDM, na forma psicótica deste transtorno. Para este objetivo, foram comparadas as concentrações absolutas dos metabólitos entre os grupos portadores de TDM com e sem sintomas psicóticos e controles saudáveis por meio de espectroscopia de próton por ressonância magnética de hidrogênio (1H-ERM). Secundariamente, analisou-se a interferência de variáveis sócio-demográficas e clínicas na medida desses metabólitos. Esperava-se que os pacientes com sintomas psicóticos (TDM-P) apresentassem alterações neuroquímicas tanto em relação ao grupo de controles saudáveis quanto a pacientes com depressão sem sintomas psicóticos (TDM-NP), independentemente da gravidade dos sintomas depressivos. Casuística e métodos. Os pacientes portadores de episódio depressivo maior (com e sem sintomas psicóticos), segundo o DSM-IV, foram recrutados no Hospital das Clínicas da Faculdade de Medicina de Ribeirão Preto da Universidade de São Paulo (HC-FMRP) e avaliados através da Entrevista Clínica Estruturada para o DSM-IV (SCID). A gravidade de sintomas depressivos e psicóticos, bem como o nível de funcionamento global foram avaliados por meio das escalas de Hamilton, BPRS e GAF (respectivamente). Foram coletadas informações a respeito de histórico de tentativas de suicídio, tratamento medicamentoso, comorbidades psiquiátricas e clínicas. Controles saudáveis da comunidade geral foram recrutados por convite da equipe de pesquisa. Utilizou-se 1H-ERM de voxel único, com tempo de eco (TE) curto (31ms), em campo magnético de 3 Tesla para a avaliação do CA de 20 pacientes com TDM-P, 22 com TDM-NP e 20 voluntários saudáveis. Foram analisados valores absolutos do glutamato (Glu), glutamato mais glutamina (Gln+Glu), N-acetilaspartato mais N-acetilaspartato-glutamato (NAA + NAAG), Fosforilcolina mais Glicerol-fosforilcolina (PC + GPC), mio-inositol (Myo) e Creatina (Cr). Dados sócio-demográficos e clínicos foram analisados através de ANOVA e qui-quadrado, enquanto os níveis de metabólitos foram comparados através de MANOVA. Correlações bivariadas entre dados clínicos e metabólitos foram analisadas por teste de Pearson ou Spearman. O nível de significância estatística empregado foi o de p <0,05. Resultados. Pacientes com TDM-P apresentaram menor escolaridade e pior funcionamento global, tanto em relação aos controles quanto em relação aos pacientes sem psicose. Os grupos de pacientes não diferiram entre si em relação à gravidade dos sintomas depressivos. Em relação aos metabólitos, houve diferença significativamente estatística entre os grupos diagnósticos. O grupo com TDM-P apresentou níveis de Glu inferiores tanto em relação ao grupo TDM-NP quanto ao grupo controle e níveis de PC + GPC e de NAA + NAAG inferiores ao grupo controle (a redução deste último metabólito atingindo significância estatística em nível de tendência apenas. Entre os sexos, os níveis de Glu e de NAA+NAAG dos participantes do sexo masculino foram inferiores aos do feminino. Por fim, os níveis de Glu e Gln+Glu foram inferiores no sexo masculino do TDM-P em relação aos demais grupos e os de Cr foram inferiores no sexo masculino no TDM-NP também em relação aos outros grupos. No entanto, as diferenças em relação ao sexo não atingiram significância estatística, possivelmente por limitações do tamanho amostral. Conclusão.Os níveis de metabólitos do CA sofreram interferência do diagnóstico e os resultados apontaram para efeito do sexo e da interação diagnóstico-sexo. As diferenças dos níveis de Glu, NAA+NAAG e PC+GPC entre os diagnósticos sugerem alterações de neurotransmissão glutamatérgica, metabolismo de membrana e integridade neuronal na TDM-P e corroboram os achados de outras áreas de estudo em depressão em psicose, que sugerem que a forma psicótica da depressão estaria mais associada ao estado de hipercortisolemia, e esta, por sua vez, levaria às alterações cerebrais compatíveis com as alterações encontradas no CA neste estudo. Além disso, os resultados apontam para a interferência do sexo nos níveis de Glu e NAA+NAAG, sugerindo um papel protetor dos hormônios femininos para o sistema glutamatérgico e ciclo do NAA. Ainda, este estudo não confirma hipóteses prévias de que as alterações biológicas entre os tipos de depressão seriam secundárias a maior gravidade de sintomas depressivos nos pacientes com TDM-P. / Introduction: Major depressive disorder (MDD) is one of the most prevalent and disabling of mental disorders. Nevertheless, its classification is still based on signs and symptoms, since its causes and pathophysyology has not been fully clarified. The presence of psychotic symptoms are relatively common during a depressive episode and is associated with clinical and biological peculiarities, but is underdiagnosed and its pathophysiology have been insufficiently studied, especially when considering the extensive literature on non-psychotic forms of depression. The aim of this study is to investigate the neurochemistry of the anterior cingulated gyrus (AC), a brain\'s neurocircuitry constituent related to the pathophysiology of MDD with psychosis/in the form of psychotic disorder. For this propose, we compared/ were compared the results of the metabolites between groups of patients with MDD with and without psychotic symptoms and controls by- proton resonance spectroscopy imaging of hydrogen (1rH-MRS). Secondly, the interference of socio-demographic and clinical on the cerebral metabolites. It was expected that patients with psychotic symptoms (MDD-P) present neurochemical changes in relation to the group of health controls and patients with depression without psychotic symptoms (MDD-Wo), regardless of the severity of depression symptons. Methods: The groups were diagnosed by the Structured Clinical Interview for DSM-IV (SCID). The severity of depressive and psychotic symptoms, as well as the level of overall functioning were assessed using the Hamilton Rating Scale, BPRS and GAF (respectively). We collected information about the history of suicide attempts, drug treatment, psychiatric and medical comorbidities.1\'H-MRS single voxel, with echo time (TE) short (3lms) in a magnetic field of 3.0 Tesla was used for the evaluation of CA in 20 patients with MDD-P, 22 with MDD-Wo and 20 healthy subjects. We analyzed the absolutevalues of glutamate (Glu), glutamate plus glutamine (Gln+Glu), N-acetylaspartate plus N-acetyl aspartate-glutamate (NAA+NAAG), glycerol phosphorylcholine plus phosphorylcholine plus choline (PC+GPC), myo-inositol (Myo) and creatine (Cr). Data on socio-demographic and clinical information were analyzed using ANOVA and chi-square, while the levels of metabolites were compared by MANOVA. The statistical significance level used was p <0.05. Results: Patients with MDD-P had less schooling and poorer overall functioning, both in relation to the controls as compared to patients without psychosis. Patient groups did not differ in the severity of depressive symptoms. Glu levels of MDD-P were lower than the MDD-Wo and the control group; NAA+NAAG levels of MDD-P were lower than in control and GPC+PC levels of MDDP were lower than the MDD-Wo. Between the sexes, Glu and NAA + NAAG levels of males were lower than females. Finally, Glu, Glu+Gln and Cr levels were different between the sexes within the groups. Conclusion:The group levels of metabolites of CA have been interfered with diagnosis and the effect of gender and gender-diagnosis interaction were close to be meaningful. The differences in the levels of Glu, NAA + NAAG and GPC + PC between diagnoses are possibly related to higher hypercortisolemia found in the MDD-P and the brain concentration of kynurenine metabolites imballance more similar with schizophrenia than MDD. The interference of sex for the levels of Glu and NAA + NAAG suggests a protective role of female hormones to glutamatergic system and cycle of the NAA. Still, probably the severity of the depressive episodes not implicated in the neurochemical differences between MDD-P and MDD-Wo
9

Využití řídké reprezentace signálu při snímání a rekonstrukci v nukleární magnetické rezonanci / Exploitng sparse signal representations in capturing and recovery of nuclear magnetic resonance data

Hrbáček, Radek January 2013 (has links)
This thesis deals with the nuclear magnetic resonance field, especially spectroscopy and spectroscopy imaging, sparse signal representation and low-rank approximation approaches. Spectroscopy imaging methods are becoming very popular in clinical praxis, however, long measurement times and low resolution prevent them from their spreading. The goal of this thesis is to improve state of the art methods by using sparse signal representation and low-rank approximation approaches. The compressed sensing technique is demonstrated on the examples of magnetic resonance imaging speedup and hyperspectral imaging data saving. Then, a new spectroscopy imaging scheme based on compressed sensing is proposed. The thesis deals also with the in vivo spectrum quantitation problem by designing the MRSMP algorithm specifically for this purpose.
10

Quantification of Pharmaceuticals at the sub-cellular level using the NanoSIMS

Dost, Maryam January 2024 (has links)
Mass spectroscopy imaging (MSI) has become a vital tool in modern research due to its ability to visualize the spatial distribution of molecules within tissue samples. The collaboration between researchers at AZ, the University of Gothenburg, and Chalmers University of Technology using the NanoSIMS instrument and MSI-SIMS technology has opened up new avenues of exploration in pharmaceutical development, particularly in examining drugs and metabolites at sub-cellular levels. This groundbreaking research has the potential to significantly improve the efficacy and safety of future pharmaceutical products. NanoSIMS possesses a unique imaging and processing technique that enables high-resolution imaging of cellular structures and subcellular compartments. This powerful tool allows for the visualization and measurement of elements and isotopes at the subcellular level. The technique involves bombarding a sample with a focused primary ion beam, which causes the emission of secondary ions. These secondary ions are then analyzed to determine the elemental and isotopic composition of the sample. NanoSIMS is particularly useful for analyzing biomolecules since traditional Mass spectrometry methods cannot provide information about how molecules behave at the cellular level. Given that many of the drugs used today have intra-cellular targets, hence understanding the drug's cellular pathways is extremely important, especially in cases where the risk for organ toxicity is high due to the high dosage of the drugs.  Our data from the image analysis indicated the presence of amiodarone inside the lysosomes; however, the lack of enrichment from the 13C portion of the dual-labeled molecule made it difficult to reach a variation below the LOD. Since our LOD is relatively high when working with 13C12C, we focused on the fact that accuracy, precision, and sensitivity would be the most crucial factors in our study. After adjusting these parameters, we obtained an image that made the measurement possible. This project aims to utilize a dual-labeled drug (13C and 127I) to bridge the absolute quantification ability of the 13C labeling scheme to the more sensitive labeling scheme. The focus of this study lies therefore on optimization and the relationship between Spatial resolution, Sensitivity, Mass Resolution, Accuracy, and Precision. This technique is extremely promising, but the limit of detection is relatively high mainly due to the high percentage of carbon in the sample. Despite this fact, we were able to present some valuable data.  Our analysis showed that the sensitivity of the 127I is much better than 13C, however, we produced an image where the ratio between the labels was above the detection limit. Using this data, a Relative sensitivity factor (RSF) value was measured, and the concentration of the drug could be estimated by applying the quantification equation.

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