Optical microscopy is the oldest form of microscopy that has been visually aiding scientific research. In our research, I have reported here two such optical microscopy techniques for two different projects. In the first project, we re-developed an instrumentation of a cost-effective, high-performing, single-molecular localization super-resolution microscopy setup that breaks the diffraction limitation barrier. Then we use a stochastic image capturing technique to capture the best precision image positions of gold nanoparticles. In our second project, we apply confocal microscopy technique to image DNA molecular nanoscale structural alterations of chromatin in cell nuclei of gut tissues caused by total body irradiation (TBI). We then quantify these alterations using a light localization technique called inverse participation ratio (IPR) using the confocal micrographs of the sample. Our results show radiation causes reduction and saturation of DNA spatial mass density fluctuations that were observed for different durations of post-irradiation.

Les virus Nipah (NiV) et Hendra (HeV) appartiennent au genre Henipavirus au sein de la famille des Paramyxoviridae. Cette famille comporte de nombreux pathogènes tel que le virus de la rougeole (MeV). Les paramyxovirus possèdent un génome de type ARN simple brin encapsidé par la nucléoprotéine (N) au sein d'une nucléocapside hélicoïdale. N interagit avec la phosphoprotéine (P) et cette dernière recrute la polymérase (L) qui assure la transcription et la réplication du génome viral. L'objectif de mon projet de thèse était de caractériser les protéines N et P ainsi que les interactions qui existent entre elles chez les trois virus, NiV, HeV et MeV. A la différence du MeV, qui a été intensivement étudié au cours des dernières années, les données moléculaires et structurales sur les Henipavirus étaient très limitées. A l'aide d'analyses computationnelles, nous avons pu déchiffrer l'organisation modulaire de N et de P, et nous avons montré que les régions, C-terminale de N (NTAIL) et N-terminale de P (PNT), sont prédites comme intrinsèquement désordonnées (RIDs). Les RIDs sont des régions fonctionnelles dépourvues de structures secondaires et tertiaires stables dans des conditions physiologiques. En utilisant des approches biochimiques et biophysiques, nous avons confirmé que NTAIL et PNT sont désordonnées. Elles conservent toutefois des structures secondaires transitoires qui pourraient correspondre à des éléments de reconnaissance moléculaire (ou MoREs) impliqués dans de transitions structurales en présence d'un partenaire. / The Paramyxoviridae family includes many important human and animal pathogens, such as measles virus (MeV), a morbillivirus, and the emerging Nipah (NiV) and Hendra (HeV) viruses, members of the Henipavirus genus. Paramyxoviruses possess a negative-strand RNA genome that is encapsidated by the nucleoprotein (N) into a helical nucleocapsid. N interacts with the phosphoprotein (P), and this latter recruits the polymerase that ensures genome replication and transcription. My PhD project has mainly focused on the characterization of the N and P proteins and on the interactions between these two proteins from the three cognate viruses, namely NiV, HeV and MeV. While MeV has been extensively studied through the past years, structural and molecular information on Henipavirus N and P proteins were rather scarce. Using computational analyses, we deciphered the modular organization of Henipavirus N and P. Intrinsically disordered regions (IDRs) were predicted within these proteins, notably at the C-terminus of N (referred to as NTAIL), and at the N-terminus of P (referred to as PNT). IDRs are functional despite they lack of a well-defined 3-D structure under physiological conditions. Biochemical and biophysical approaches pointed out a mostly disordered state for both NTAIL and PNT, although they were shown to contain short-order prone segments (i.e. molecular recognition elements, MoREs). These latter are involved in partner recognition and in disorder-to-order transitions. The C-terminal domains of the P proteins (referred to as PXD) were found to bind to NTAIL and to induce an α-helical transition thereof.

Title The most often problems in shoulder girdle of women basketball players and options of physiotherapeutic affect. Objectives The main goal of the thesis is in theoretical part to summarize potentional problems in shoulder girdle of basketball players, options and solutions of these problems. There is complex examination of shoulder girdle of dominant upper limb of women basketball players in an experimental part and figure out where is the main problem in this part. Methods There are two parts of the thesis, the first one is the theoretical background for second experimental part where complex functional physiotherapeutic examination of shoulder girdle with using of aspection, palpation and special tests for shoulder girdle were made. The most often problems in shoulder girdle of women basketball player has been determined by using the results of testing process. Results Testing of shoulder girdle of women basketball players showed how often blockage of ribs is. Blockage of fifth rib was present in 90% of the probands, frequent was also decentred position of shoulder and shoulder blade, hypertone of upper fixators of shoulder blade and pectoral muscles. Most of probands had restriction of passive motion to segment in thoracic spine and hypermobility of shoulder. Often was present weakness of...

In this work, in-depth structural and electrical characterisation is used to study a family of “empty” tetragonal tungsten bronzes (TTBs), A2₄A1₂B1₂B2₈O₃₀. An initial investigation into the effect of the A1-cation size on the properties of empty Ba₄R₀.₆₇◻₁.₃₃Nb₁₀O₃₀ TTBs (where R is the A1-cation and R = La, Nd, Sm, Gd, Dy and Y; ◻ = vacancy) was performed. These were determined to be metrically tetragonal by powder x-ray diffraction, with decreasing R cation size inducing increased crystal anisotropy. This tetragonal structural distortion, driven by contraction in the ab-plane, is shown to stabilise c-axis ferroelectricity; a direct correlation between tetragonality and the ferroelectric Curie temperature, T[sub]C, is demonstrated. Further examination of the relaxor ferroelectric (RFE) to ferroelectric (FE) crossover in Ba₄(La₁₋ₓNdₓ)₀.₆₇◻₁.₃₃Nb₁₀O₃₀ TTBs using detailed structural studies employing variable temperature, high resolution neutron, synchrotron X-ray and electron diffraction revealed a common superstructure with 2√2 × √2 × 2 cell with respect to the basic tetragonal aristotype cell. However, they display different degrees of order/disorder which can disrupt polar order (ferroelectricity). La-rich analogues exhibit a disordered regime between the low and high temperature ferroelectric and non-polar phases. Although polar, this disordered regime is non-ferroelectric, however, large polarisation may be established with an applied electric field, but relaxes back to the disordered phase upon removal of the field. Substitution of Nd for La at the A1-site leads to destabilisation of the disordered phase and reintroduces “normal” ferroelectric behaviour. Finally, isovalent substitution of Sr²⁺∙ for Ba²⁺ is shown to lead to the development of relaxor behaviour at higher dopant concentrations in Ba₄₋ₓSrₓDy₀.₆₇◻₁.₃₃Nb₁₀O₃₀, (x = 0, 0.25, 0.5, 1, 2, 3; ◻ = vacancy). With increasing x the unit cell contracts in both the ab- plane and c-axis coinciding with a decrease in T[sub]C and development of relaxor behaviour for x ≥ 2. This observation is rationalised by differing cation occupancies: for x ≤ 1, Sr²⁺ principally occupies the A2-site while for x ≥ 2 significant Sr²⁺ occupation of the A1-site leads to the observed RFE characteristics. The FE to RFE crossover is discussed in the context of a previously proposed TTB crystal chemical framework with the A1-site tolerance factor identified as the dominant influence on relaxor behaviour.

Optical scattering techniques are suitable probes for studying weak disordered refractive index media such as biological cells and tissues. Several brain diseases accompany the nano-to-submicron scales’ structural alterations of the basic building blocks of cells/tissues in the brain and skin fibroblasts. For example, several molecular modifications such as DNA methylation, and histone degradation occur in cells earlier than morphological changes detectable at a microscopic level. These alterations also change the refractive index structures of the cells/tissues at the nano-to-submicron scales. Unfortunately, traditional methods do not allow the detection of these alterations in the early stages of diseases. Recent developments in mesoscopic optical physics-based techniques can probe these alterations. Particularly, mesoscopic light transport and localization approaches enable the measurements and quantifications of the degree of structural alterations in the cells/tissues and unprecedented information on progressive brain diseases. This dissertation provides a detailed study of the structural changes at nano-to-submicron levels in human brain cells/tissues and human skin fibroblasts in two major neurodegenerative diseases, Alzheimer’s disease (AD) and Parkinson's disease (PD), using dual spectroscopic imaging techniques, namely partial wave spectroscopy (PWS) for light transport and inverse participation ratio (IPR) for weak light localization. In particular, a nanoscale-sensitive advanced PWS technique is used to quantify the structural alterations in cells/tissues. Further, the IPR technique is used to quantify molecular-specific mass density alterations within cells using their light localization properties via confocal imaging. These dual optical scattering techniques were utilized to measure the degree of structural disorders, termed ‘disorder strength’, by distinguishing the diseased cells/tissues from normal ones in the human brain and human skin fibroblasts due to neurodegenerative diseases. Our results show that the degree of structural disorder (����) increases in the affected cells and tissues relative to the normal, both at the cellular/tissue level and in the DNA molecular mass density structural levels. The results of the studies strongly reveal that the degree of structural disorder strength (����) is an effective biomarker/numerical indicator for brain disease diagnostics.

The present work reports on thermal low-temperature properties of rare earth transition metal borocarbides such as specific heat, thermal conductivity and thermopower. The influence of structural disorder, caused by stoichiometric variations and substitutions of the rare earth element or the transition metal, on the thermal and superconducting low-temperature properties is investigated. The structural disorder results in the reduction of the superconducting transition temperature Tc, of the Sommerfeld value gamma, of the upper critical magnetic field Hc2(0), of the negative curvature of the H-dependence of the T-linear specific heat contribution gamma(H), and in the reduction of the positive curvature of Hc2(T) near Tc. But isoelectronic rare earth substitutions do not result in the transition from clean to dirty limit. Due to Pt-substitutions similar reductions of thermal and superconducting properties are observed. The behaviour of Hc2(0) and the concentration dependence of the positive curvature of Hc2(T) near Tc point to the transition from clean to quasi-dirty limit in the case of Pt-substitutions. / In der vorliegenden Arbeit werden Untersuchungen zu thermischen Tieftemperatureigenschaften, wie der spezifischen Wärmekapazität, der Wärmeleitfähigkeit und der Thermokraft, an supraleitenden Seltenerd-Übergangsmetall-Borkarbiden vorgestellt. Es wurde der Einfluß von gezielt hervorgerufener Unordnung im kristallographischen Aufbau, die durch isoelektronische Substitutionen des Seltenerd-Elements und des Übergangsmetalls sowie durch Söchiometrievariationen erzeugt wurde, auf die thermischen und supraleitenden Tieftemperatureigenschaften untersucht. Folge der strukturellen Unordnung ist eine Reduzierung der charakteristischen Eigenschaften, wie der Sprungtemperatur der Supraleitung Tc, der Sommerfeldkonstanten gamma, des oberen kritischen Magnetfelds Hc2(0), der negativen Krümmung in der Feldabhängigkeit des T-linearen Beitrags zur spezifischen Wärme gamma(H) sowie eine Reduzierung der positiven Krümmung in der Temperaturabhängigkeit von Hc2(T). Isoelektronische Substitutionen auf dem Seltenerd-Platz führen aber nicht zum Erreichen des dirty limit. Eine Reduzierung der relevanten supraleitenden und thermischen Eigenschaften durch Pt-Beimengungen wird ähnlich wie im Falle der Lu-Substitution festgestellt. Die Konzentrationsabhängigkeit von Hc2(0) sowie die Krümmung von Hc2(T) weisen hier auf einen Übergang vom clean limit zum quasi-dirty limit durch die Pt-Substitution hin.

The present work reports on thermal low-temperature properties of rare earth transition metal borocarbides such as specific heat, thermal conductivity and thermopower. The influence of structural disorder, caused by stoichiometric variations and substitutions of the rare earth element or the transition metal, on the thermal and superconducting low-temperature properties is investigated. The structural disorder results in the reduction of the superconducting transition temperature Tc, of the Sommerfeld value gamma, of the upper critical magnetic field Hc2(0), of the negative curvature of the H-dependence of the T-linear specific heat contribution gamma(H), and in the reduction of the positive curvature of Hc2(T) near Tc. But isoelectronic rare earth substitutions do not result in the transition from clean to dirty limit. Due to Pt-substitutions similar reductions of thermal and superconducting properties are observed. The behaviour of Hc2(0) and the concentration dependence of the positive curvature of Hc2(T) near Tc point to the transition from clean to quasi-dirty limit in the case of Pt-substitutions. / In der vorliegenden Arbeit werden Untersuchungen zu thermischen Tieftemperatureigenschaften, wie der spezifischen Wärmekapazität, der Wärmeleitfähigkeit und der Thermokraft, an supraleitenden Seltenerd-Übergangsmetall-Borkarbiden vorgestellt. Es wurde der Einfluß von gezielt hervorgerufener Unordnung im kristallographischen Aufbau, die durch isoelektronische Substitutionen des Seltenerd-Elements und des Übergangsmetalls sowie durch Söchiometrievariationen erzeugt wurde, auf die thermischen und supraleitenden Tieftemperatureigenschaften untersucht. Folge der strukturellen Unordnung ist eine Reduzierung der charakteristischen Eigenschaften, wie der Sprungtemperatur der Supraleitung Tc, der Sommerfeldkonstanten gamma, des oberen kritischen Magnetfelds Hc2(0), der negativen Krümmung in der Feldabhängigkeit des T-linearen Beitrags zur spezifischen Wärme gamma(H) sowie eine Reduzierung der positiven Krümmung in der Temperaturabhängigkeit von Hc2(T). Isoelektronische Substitutionen auf dem Seltenerd-Platz führen aber nicht zum Erreichen des dirty limit. Eine Reduzierung der relevanten supraleitenden und thermischen Eigenschaften durch Pt-Beimengungen wird ähnlich wie im Falle der Lu-Substitution festgestellt. Die Konzentrationsabhängigkeit von Hc2(0) sowie die Krümmung von Hc2(T) weisen hier auf einen Übergang vom clean limit zum quasi-dirty limit durch die Pt-Substitution hin.

To support the growing global demand for energy, new sustainable solutions are needed both economically and environmentally. Thermoelectric waste heat recovery and energy harvesting could contribute by increasing industrial process efficiency, as well as powering stand-alone devices, microgenerators, and small body appliances.The structural complexity of quaternary chalcogenide materials provides an opportunity for engineering defects and disorder, to modify and possibly improve specific properties. Cu2ZnSnS4 (CZTS, often kesterite), valued for the abundance and non-toxicity of the raw materials, seems particularly suited to explore these possibilities, as it presents several structural defects and polymorphic phase transformations. The aim of this doctoral work is to systematically investigate the effects of structural polymorphism, disorder, and defects on the thermoelectric properties of CZTS, with particular emphasis to their physical origin. A remarkable case is the order-disorder transition of tetragonal CZTS, which is found responsible for a sharp enhancement in the Seebeck coefficient due to a flattening and degeneracy of the electronic energy bands. This effect, involving a randomization of Cu and Zn cations in certain crystallographic planes, is verified in bulk and thin film samples, and applications are proposed to exploit the reversible dependence of electronic properties on disorder. Low-temperature mechanical alloying is instead discovered stabilizing a novel polymorph of CZTS, which disordered cubic structure is studied in detail, and proposed deriving from sphalerite-ZnS. The total cation disorder in this compound provides an uncommon occurrence in thermoelectricity: a concurrent optimization of Seebeck coefficient, electrical and thermal conductivity. These findings, besides providing new and general understanding of CZTS, can cast light on profitable mechanisms to enhance the thermoelectric performance of semiconducting chalcogenides, as well as delineate alternative and fruitful applications.