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Developmental biologists try to elucidate how it is possible for cells, all originating from the same egg, to develop into a variety of highly specialized structures, such as muscles, skin, brain and limbs. What organizes the behavior of these cells, and how can the information encoded in the DNA account for the observed patterns and developmental processes? Cell movements and tissue flow during embryogenesis constitute a beautiful problem of bridging scales: On the microscopic scale, cells are expressing particular genes which determine their identities and also their fate during morphogenesis. These molecular determinants then lead to the macroscopic phenomena of cell movements and tissue arrangements, for which one needs a continuum description in terms of active fluids. Taking into account that the number of cells is fairly small, a complete coarse graining is not possible, and a characterization of both mesoscopic (individual cell motion) and macroscopic (flow) behavior is required for a full description. In the here presented work, a set of different experimental methods was applied to investigate the mechanical and dynamical properties of zebrafish embryonic cells and tissues. This thesis is structured as follows: In chapter 2, we introduce the fundamental concepts that are important for the study of cell motion during zebrafish embryonic development. In chapter 3, the materials and methods applied in this work are described. The experimental results of my thesis-work are presented in chapters 4-8: Chapter 4 concentrates on the physical properties of whole tissues. It is shown that tissues are viscoelastic materials. Tissue viscoelasticity is not a new concept, but this study is the first one to quantify the mechanical properties of tissues that are in actual contact in a developing embryo. In chapter 5, cell rearrangements in culture, such as cell sorting and tissue wetting are discussed. These experiments show that tissue interactions are largely determined by tissue surface and interfacial tensions. In chapter 6, an optical stretcher device is applied to measure, solely by means of laser light, the material properties of individual cells. Hereby it is shown that single cells from the two investigated tissue types differ in their mechano-physical properties. After the study of cell and tissue mechanics, the dynamics of cell migration in three dimensions in tissue aggregates and in developing zebrafish embryos is addressed: In chapter 7, 3D-cell migration in multicellular aggregates is analyzed quantitatively by studying the mean square displacement, cell velocity distribution and velocity autocorrelation. In chapter 8, we study the cell motion within the developing zebrafish embryo. By following the motion of many cells in four dimensions, we are able to generate a velocity flow profile for this cell-flow. Chapter 9 gives a brief summary of the obtained results and an outlook to future projects motivated by the presented study. The final part of this thesis are four appendices. Appendix A contains protocols and additional methods. Appendix B contains several calculations, whose results were used in the main part of this work. Appendix C contains additional data and discussions, which were excluded from the main part due to space limitations. Finally, Appendix D consists of a compact disc with 11 movies and a movie description, which serves as supplemental material to the presented data. (Die Druckexemplare enthalten jeweils eine CD-ROM als Anlagenteil: 650 MB: Movies - Nutzung: Referat Informationsservice der SLUB)

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An induction setup for levitation studies of molten metals was built. The setup was used to levitate and heat stainless steel samples of 2.00 g to 1600 °C and subject them to different atmospheres. Changes in shape and temperature were recorded by video and infrared thermocouple. Oxide films forming on the droplets during levitation were observed. It was possible to notice an immediate surface reaction when the reaction gas was introduced. This reaction is concluded to influence the surface and bulk composition, and therefore have an effect on the shape evolution of the droplet. A more oxidizing atmosphere resulted in a more conical droplet shape; this is thought to be an effect of lowered surface tension and the conically shaped volumetric force caused by the magnetic field. Changes in temperature after the sample is molten are thought to be an effect of changes in emissivity, caused by surface oxidization. Post mortem analysis show a difference in surface morphology for samples subjected to different gases, as well as a difference in amount of oxidization.

This study was divided into four sections: the literature review; the mechanism by which a package defect becomes a leak; and the imposed pressures generated within a package during distribution; comparison of the threshold leak size to the critical leak size and their effect on loss of package sterility; and the relationships between microorganism characterisitics and the threshold leak size, and their effect on the critical leak size. Section II. The mechanism by which a package defect converts to a leaker in an effort to develop a relationship between the threshold leak size and loss of package sterility was studied. The threshold leak size is the hole size at which the onset of leakage occurs. The threshold pressure is that which is required to initiate a leak. Leak initiation was studied in terms of the interaction between three components: liquid attributes of liquid food products, defect size, and pressures required to initiate liquid flow. Liquid surface tension, viscosity, and density were obtained for sixteen liquids. The imposed pressures (Po) required to initiate flow through microtubes of IDs 0, 2, 5, 7, 10, 20 or 50 m, were measured using 63 test cells filled with safranin red dye, tryptic soy broth, and distilled water with surface tensions of 18.69 mN/m, 44.09 mN/m, and 64.67 mN/m, respectively. Significant differences were found between observed threshold pressures for safranin red dye, tryptic soy broth, and distilled water (p < 0.05). Liquids with small surface tensions such as safranin red dye required significantly lower threshold imposed pressures than liquids with large surface tensions such as distilled water (p < 0.05). An equation was developed to quantify the relationship between liquid surface tension, threshold imposed pressure, and defect size. Observed threshold pressures were not significantly different (p > 0.05) than those predicted by the equation. Imposed pressures and vacuums generated within packages during random vibration and sweep resonance tests were measured for brick-style aseptic packages (250 ml), metal cans size 76.2-mm x 114.3-mm (425 ml), quart gable top packages (946 ml), one-half gallon gable top packages (1.89 L) and one-gallon milk jugs (4.25 L). Significant differences were found between packages for observed generated pressures during vibration testing (p < 0.05). An equation to calculate the threshold like size based on liquid surface tension and imposed pressure was established. Section III. The onset of liquid flow through a defect as a result of imposed positive pressures or vacuum were linked to the sterility loss of a package. Five-hundred sixty-three test cells, each with microtubes of 0, 2, 5, 7, 10, 20 or 50 m, manufactured to simulate packages with defects, were biochallenged via an aerosol concentration of 106 cells/cm3 of Pseudomonas fragi Lacy-1052, under conditions of imposed positive pressure or vacuum of 20.7, 13.8, 6.9, 0, -6.9, -13.8, -20.7 kPa, respectively and temperatures of 4 , 25 and 37 C. A statistically significant relationship between loss of sterility due to microbial ingress in test cells and the initiation of liquid flow were found (p < 0.05). Microbial ingress was not found in test cells with microtube IDs of 2 m. Leak sizes critical to the sterility maintenance were found to be different based on the liquid surface tension, and imposed package pressures. The threshold leak size where the onset of liquid flow was initiated, and the critical leak size at which loss of sterility occured were not significantly different (p > 0.05). Section IV. The effects of microorganism size and motility, and the imposed pressure required to initiate liquid flow, on the leak size critical to the sterility of a package were measured. Pseudomonas fragi Lacy-1052, Bacillus atrophaeus ATCC 49337, and Enterobacter aerogenes ATCC 29007 were employed to indicate loss of package sterility. One hundred twenty-six microtubes with interior diameters (I.D.s) of 5, 10, and 20 m and 7 mm in length were used as the manufactured defects. Forty-two solid microtubes were used as a control. An equation was used to calculate imposed pressures sufficient to initiate the flow of tryptic soy broth through all defects. No significant differences were found for loss of sterility as a result of microbial ingress into test cells with microtube ID sizes of 5, 10, and 20 m between the test organisms (p > 0.05). Interactions between the initiation of liquid flow as a result of imposed pressures, and the sterility loss of test cells were significant (p < 0.05). / Ph. D.

Le détachement d'une goutte est un phénomène que nous observons quotidiennement. Il résulte de la rupture de l'interface entre le fluide dispersé en goutte et le fluide environnant. Cette rupture a fait l'objet de nombreuses études. Il est bien établi que sa dynamique est régie par une compétition entre la capillarité, l'inertie, et la viscosité du fluide. Ce manuscrit décrit l'influence sur la dynamique de rupture d'une modification des propriétés de l'interface entre deux fluides à l'aide d'agents de surface. Lorsque l'agent de surface est un surfactant (SDS), la dynamique d'amincissement peut se faire selon deux modes. Deux régimes linéaires en temps constituent le premier mode. Le second mode comporte trois régimes linéaires. Dans les deux cas, l'aminicissement commence par un premier régime, suivi d'un deuxième régime de pente plus forte. Lorsque le troisième régime existe, sa pente est inférieure à celle du second régime. La variation des pentes des régimes linéaires témoigne du comportement dynamique du surfactant à l'interface. La valeur de la tension interfaciale $\gamma$ extraite du premier régime linéaire correspond à la valeur à l'équilibre de la tension interfaciale du système, $\gamma_{eq}$. La vitesse d'amincissement plus élevée au cours du second régime est reliée à une dépletion partielle en surfactant de la zone d'amincissement maximal. Le ralentissement constaté pendant le troisième régime est lié au déplacement de cette zone vers une région plus riche en surfactant, où la tension $\gamma$ est plus faible. La dynamique d'amincissement du cou est très différente lorsque des polymères de poids moléculaire intermédiaire ($\sim$ 100 kDa) sont présents simultanément avec du SDS dans la phase continue. Lorsque $C_{SDS}$ est supérieure à 0,15 fois la concentration micellaire critique (CMC), le comportement est identique à celui observé en présence de surfactant seul. En dessous de 0,15 CMC, l'amincissement ralentit exponentiellement à l'approche de la rupture, et un phénomène de beads-on-a-string apparaît. Ces constatations sont analogues à celles faites lorsqu'une solution de polymères est menée à la rupture. Dans notre cas, les polymères sont uniquement à la surface du jet et non dans son volume! Une analyse des profils du cou au cours du temps démontre l'existence d'une auto-similarité à l'approche de la rupture. Bien que les systèmes étudiés soient plus complexes, ils présentent des caractéristiques qualitativement analogues à celles observées dans des systèmes de fluides simples. Toutefois, il existe une grande différence quantitative. / Droplet detachment is ubiquitous in everyday life. It results from the rupture of an interface separating two fluids. This rupture has been widely studied. It is now well established that it relies on a competition between capillary, inertial and viscous phenomena. In this manuscript, we report on the influence on the breakup dynamics of the presence of surface agents at the interface. When SDS is used as a surface agent, thinning can proceed in two ways. In the first mode, the dynamics of thinning are characterized by two linear-in-time regimes. The second mode is made of three linear-in-time regimes. In both cases, thinning starts with a first regime, followed by a steeper second regime. When a third regime exists, its slope is softer. Slope variation bears witness to a dynamical behaviour of the surfactants at the interface. The value for the interfacial tension $\gamma$ calculated from the slope of the first linear regime is in agreement with the equilibrium interfacial tension of the system, $\gamma_{eq}$. The higher thinning speed during the second regime is linked to a partial depletion in surfactant of the maximal thinning zone. The slowdown in the tihrd regime is related to a displacement of the thinning zone in a region of higher surfactant concentration, where $\gamma$ is lower. The thinning dynamics is very different when polymers are added to the surfactant solution. If $C_{SDS}$ is higher than 0.15 times the critical micellar concentration (CMC), a behaviour similar to the pure-surfactant case is observed. Below 0.15 CMC, an exponential slowdown is observed in the last instants, as well as a "`beads-on-a-string"' phenomenon. These observations are analogous to what is seen when a solution of polymers is led to breakup. In our case, polymers are not in the bulk; they are at the interface of the two fluids! Analysis of the profiles of the neck in both cases showed that profiles are self-similar. Qualitatively, they share features with profiles observed in the case of breakup of interfaces between simple fluids. Quantitatively, slopes and angles are different.

Ce travail de thèse porte sur l'extension et l'analyse d'un solveur volumes finis eulérien, co-localisé avec capture d'interfaces pour la simulation des écoulements multi-matériaux non miscibles. Les extensions proposées s'inscrivent dans la volonté d'élaborer un outil de simulation multi-physiques. Dans le cadre de ce mémoire, le caractère multi-physiques recouvre les champs que nous allons détailler. Nous traitons le cas des écoulements radiatifs modélisés par un système à deux températures qui couple les phénomènes purement hydrodynamiques aux phénomènes radiatifs. Nous proposons un solveur permettant la prise en compte des effets de tension superficielle à l'interface entre deux fluides. Nous développons un solveur implicite permettant la simulation précise d'écoulements faisant intervenir de faibles nombres de Mach par le biais d'une méthode de renormalisation de la diffusion numérique. Enfin, les effets tri-dimensionnels sont considérés ainsi que la possibilité d'étendre le schéma de base aux écoulements à un nombre quelconque de matériaux. A chaque étape, les solveurs développés sont validés sur des cas-tests. / This work is devoted to the extension of a eulerian cell-centered finite volume scheme with interfaces capturing for the simulation of multimaterial fluid flows. Our purpose is to develop a simulation tool which could be able to handle multi-physics problems in the following sense. We address the case of radiating flows, modeled by a two temperature system of equations where the hydrodynamics are coupled to radiation transport. We address a numerical scheme for taking surface tension forces into account. An implicit scheme is proposed to handle low Mach number fluid flows by means of a renormalization of the numerical diffusion. Eventually, the scheme is extended to three-dimensional flows and to multimaterial flows, that is with an arbitrary number of materials. At each step, numerical simulations validate our schemes.