京都大学 / 0048 / 新制・課程博士 / 博士(医学) / 甲第18647号 / 医博第3946号 / 新制||医||1006(附属図書館) / 31561 / 京都大学大学院医学研究科医学専攻 / (主査)教授 福山 秀直, 教授 平岡 眞寛, 教授 宮本 享 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DGAM

Die Magnetresonanztomographie stellt für die Detektion von zerebralen und spinalen Läsionen bei der Multiplen Sklerose die sensitivste bildgebende Methode dar und ist ein Instrument, die räumliche und zeitliche Dissemination der Erkrankung abbilden zu können. Die Spezifität des Verfahrens ist aber gering und die Applikation von MR-Kontrastmittel bei der Diagnostik zwingend notwendig. Bei der suszeptibilitätsgewichteten Magnetresonanzbildgebung (SWI) handelt sich um ein MR-Verfahren, das Schwankungen der magnetischen Suszeptibilität in der Gradientenechosequenz nutzt, um einen Bildkontrast zu erzeugen. Dadurch ist es möglich, hochaufgelöst und sensitiv Magnetfeldinhomogenitäten zu detektieren. In der vorliegenden prospektiven Studie wurden im Zeitraum von 2010 bis 2013 MRT-Untersuchungen unter Einschluss der suszeptibilitätsgewichteten Bildgebung in einem Kollektiv von 41 Patienten (33 weiblich, 8 männlich;; Durchschnittsalter 40 Jahre) mit gesicherter Multipler Sklerose und einem Vergleichskollektiv von 43 Patienten (28 weiblich, 15 männlich;; Durchschnittsalter 45 Jahre), bei denen weder bildgebend noch klinisch Hinweise auf eine Multiple Sklerose vorlagen, durchgeführt. Die Untersuchung wurde mit einem 1,5-Tesla-Magnetresonanz- tomographen realisiert. Das besondere wissenschaftliche Interesse galt dabei der „normal erscheinenden weißen Substanz“ (NAWM) und den zerebralen Läsionen. In der FLAIR-Sequenz wurden die MS-Läsionen und ROIs detektiert und markiert. Anschließend erfolgte die Übertragung in gleicher Schichthöhe auf die SWI-, T1w- und ADC-Sequenz. Zur Differenzierung von akuten und chronischen Läsionen erfolgte im Untersuchungsablauf die intravenöse Gabe von Gadolinium-DTPA- Kontrastmittel. Schon längere Zeit werden im wissenschaftlichen Diskurs krankheitsspezifische Veränderungen in der NAWM vor Auftreten der MS-Läsionen vermutet. Die Sensitivität der FLAIR-Sequenz ist aber scheinbar unzureichend. Mit der SWI- Bildgebung konnten statistisch signifikante SI-Unterschiede zwischen Referenz- und MS-Gruppe in der NAWM herausgearbeitet werden. Nach Kontrastmittelgabe wurden dabei keine Veränderungen der Signalintensität der NAWM in den beiden Gruppen festgestellt, was gegen die Hypothese einer primären Schrankenstörung in der Pathogenese der Erkrankung spricht. Insgesamt wurden 669 Läsionen identifiziert. Es folgte eine Differenzierung in 11 KM-aufnehmende (ACM-) Läsionen, 546 nicht KM-aufnehmende (NACM-) Läsionen und 112 „black holes“ (BLH). Eine gezielte Auswertung der Phasen- und Magnitudenbilder wurde nicht durchgeführt. Besonders in den KM-anreichernden Läsionen (ACM) sind bereits vor der KM-Gabe statistisch erhöhte Signalintensitäten in der SWI-Sequenz nachweisbar. Dies könnte theoretisch für den Nachweis akuter Läsionen, ohne dass eine KM-Gabe notwendig ist, genutzt werden. Doch ist die Anzahl dieser Läsionen in der Untersuchung zu gering, um verlässliche Aussagen diesbezüglich machen zu können. Dafür sind weitere Studien notwendig. Zusammenfassend betrachtet handelt es sich bei der SWI um ein hoch sensitives bildgebendes Verfahren, welches eine ausgezeichnete Differenzierung von ZNS- Läsionen ermöglicht und Veränderungen der NAWM bei der Enzephalomyelitis disseminata nachweisen kann. Es stellt somit eine sinnvolle Ergänzung zur konventionellen MS-Diagnostik dar und ist ein innovatives bildgebendes In-vivo- Verfahren zur weiteren Erforschung der Multiplen Sklerose.

Die Magnetresonanztomographie stellt für die Detektion von zerebralen und spinalen Läsionen bei der Multiplen Sklerose die sensitivste bildgebende Methode dar und ist ein Instrument, die räumliche und zeitliche Dissemination der Erkrankung abbilden zu können. Die Spezifität des Verfahrens ist aber gering und die Applikation von MR-Kontrastmittel bei der Diagnostik zwingend notwendig. Bei der suszeptibilitätsgewichteten Magnetresonanzbildgebung (SWI) handelt sich um ein MR-Verfahren, das Schwankungen der magnetischen Suszeptibilität in der Gradientenechosequenz nutzt, um einen Bildkontrast zu erzeugen. Dadurch ist es möglich, hochaufgelöst und sensitiv Magnetfeldinhomogenitäten zu detektieren. In der vorliegenden prospektiven Studie wurden im Zeitraum von 2010 bis 2013 MRT-Untersuchungen unter Einschluss der suszeptibilitätsgewichteten Bildgebung in einem Kollektiv von 41 Patienten (33 weiblich, 8 männlich;; Durchschnittsalter 40 Jahre) mit gesicherter Multipler Sklerose und einem Vergleichskollektiv von 43 Patienten (28 weiblich, 15 männlich;; Durchschnittsalter 45 Jahre), bei denen weder bildgebend noch klinisch Hinweise auf eine Multiple Sklerose vorlagen, durchgeführt. Die Untersuchung wurde mit einem 1,5-Tesla-Magnetresonanz- tomographen realisiert. Das besondere wissenschaftliche Interesse galt dabei der „normal erscheinenden weißen Substanz“ (NAWM) und den zerebralen Läsionen. In der FLAIR-Sequenz wurden die MS-Läsionen und ROIs detektiert und markiert. Anschließend erfolgte die Übertragung in gleicher Schichthöhe auf die SWI-, T1w- und ADC-Sequenz. Zur Differenzierung von akuten und chronischen Läsionen erfolgte im Untersuchungsablauf die intravenöse Gabe von Gadolinium-DTPA- Kontrastmittel. Schon längere Zeit werden im wissenschaftlichen Diskurs krankheitsspezifische Veränderungen in der NAWM vor Auftreten der MS-Läsionen vermutet. Die Sensitivität der FLAIR-Sequenz ist aber scheinbar unzureichend. Mit der SWI- Bildgebung konnten statistisch signifikante SI-Unterschiede zwischen Referenz- und MS-Gruppe in der NAWM herausgearbeitet werden. Nach Kontrastmittelgabe wurden dabei keine Veränderungen der Signalintensität der NAWM in den beiden Gruppen festgestellt, was gegen die Hypothese einer primären Schrankenstörung in der Pathogenese der Erkrankung spricht. Insgesamt wurden 669 Läsionen identifiziert. Es folgte eine Differenzierung in 11 KM-aufnehmende (ACM-) Läsionen, 546 nicht KM-aufnehmende (NACM-) Läsionen und 112 „black holes“ (BLH). Eine gezielte Auswertung der Phasen- und Magnitudenbilder wurde nicht durchgeführt. Besonders in den KM-anreichernden Läsionen (ACM) sind bereits vor der KM-Gabe statistisch erhöhte Signalintensitäten in der SWI-Sequenz nachweisbar. Dies könnte theoretisch für den Nachweis akuter Läsionen, ohne dass eine KM-Gabe notwendig ist, genutzt werden. Doch ist die Anzahl dieser Läsionen in der Untersuchung zu gering, um verlässliche Aussagen diesbezüglich machen zu können. Dafür sind weitere Studien notwendig. Zusammenfassend betrachtet handelt es sich bei der SWI um ein hoch sensitives bildgebendes Verfahren, welches eine ausgezeichnete Differenzierung von ZNS- Läsionen ermöglicht und Veränderungen der NAWM bei der Enzephalomyelitis disseminata nachweisen kann. Es stellt somit eine sinnvolle Ergänzung zur konventionellen MS-Diagnostik dar und ist ein innovatives bildgebendes In-vivo- Verfahren zur weiteren Erforschung der Multiplen Sklerose.

Susceptibility Weighted Imaging (SWI) utilizes the susceptibility difference between tissues to create a new type of imaging contrast in MRI that is different from conventional spin density, T1-, or T2-weighted imaging. The SWI sequence is a high resolution, fully flow compensated gradient echo sequence. High resolution reduces the signal loss caused by local field inhomogeneities yet with relatively long echo time sufficient contrast can be generated between tissues with a susceptibility difference. Contrast between tissues in the phase image is directly proportional to the susceptibility difference and can be used to enhance the contrast in the magnitude image. In this thesis, we optimize the contrast to noise ratio (CNR) in the magnitude image as a function of the multiplication of the phase mask generated from the phase image. We find that a shorter echo time has the advantage of achieving higher CNR efficiency compared with longer echo times. SWI has found numerous clinical applications due to its sensitivity to blood products. Partial volume effects occur when a voxel contains both venous blood and brain parenchyma. We studied the apparent phase of a voxel as a function of imaging resolution and predict what the best imaging parameters for a specific clinical application should be. Currently, a long acquisition time is the bottleneck for SWI to be used as a routine protocol in the clinical environment. This thesis evaluates segmented echo planar imaging (SEPI) as an alternative to speed up the acquisition while reducing the artifacts usually associated with other fast imaging methods. / Thesis / Doctor of Philosophy (PhD)

<p>Quantitatively measuring oxygen saturation is important to characterize the physiological or pathological state of tissue function. In this thesis, we demonstrate the possibility of using susceptibility mapping to noninvasively estimate the venous blood oxygen saturation level. Accurate susceptibility quantification is the key to oxygen saturation quantification. Two approaches are presented in this thesis to generate accurate and artifact free susceptibility maps (SM): a regularized inverse filter and a k-space iterative method. Using the regularized inverse filter, with sufficient resolution, major veins in the brain can be visualized. We found that different sized vessels show a different level of contrast depending on their partial volume effects; larger vessels show a bias toward a reduced susceptibility approaching 90% of the expected value. Also, streaking artifacts associated with high susceptibility structures such as veins are obvious in the reconstructed SM. To further improve susceptibility quantification and reduce the streaking artifacts in the SMs, we proposed a threshold-based k-space iterative approach that used geometric information from the SM itself as a constraint to overcome the ill-posed nature of the inverse filter. Both simulations and in vivo results show that most streaking artifacts inside the SM were suppressed by the iterative approach. In simulated data, the bias toward lower mean susceptibility values inside vessels has been shown to decrease from around 10% to 2% when choosing an appropriate threshold value for the proposed iterative method, which brings us one step closer to a practical means to map out oxygen saturation in the brain.</p> / Doctor of Philosophy (PhD)

Introdução: Neurocisticercose (NCC) é a principal causa evitável de epilepsia adquirida no mundo. NCC, além de ser, a doença parasitária mais comum do SNC, representa um importante problema de saúde pública, especialmente em países em desenvolvimento. Estudos de neuroimagem são cruciais no diagnóstico e planejamento terapêutico da NCC. Apesar da ressonância magnética (RM) fornecer maior número e detalhe de informações sobre a doença, a tomografia computadorizada (TC) ainda é o método mais sensível na detecção de calcificação intracraniana, o achado radiológico mais comum da NCC. Objetivo: Comparar performance das sequências de RM ponderadas em suscetibilidade magnética na identificação de calcificações intracranianas em pacientes com NCC. Métodos: Estudo prospectivo, unicêntrico, no qual 57 indivíduos foram submetidos a TC e RM de crânio. Todos os indivíduos foram provenientes do Ambulatório de Doenças Infecciosas do Departamento de Neurologia do Hospital das Clínicas - Faculdade de Medicina da Universidade de São Paulo (HC-FMUSP), com diagnóstico confirmado de NCC. O protocolo de RM incluiu uma sequência convencional 2D gradiente eco (2D-GRE) e duas relativamente novas sequências de suscetibilidade magnética: susceptibilityweighted imaging (SWI) e principles of echo shifting with a train of observations (PRESTO). A TC foi considerada método padrão de referência. Dois neurorradiologistas, cegos para os dados clínicos e demais achados radiológicos, analisaram independentemente as sequências 2D-GRE, SWI e PRESTO quanto à presença, número e localizações de calcificações intracranianas atribuídas a NCC. Resultados: Foram identificadas, pela TC, 739 lesões calcificadas relacionadas a NCC em 50 dos 57 indivíduos incluídos no estudo. A média de lesões calcificadas por paciente foi de 12,9 (± 19,8). A médias de lesões encontradas pelas sequências de suscetibilidade magnética, obtido através da média dos resultados dos observadores, foi de 10,8 (± 17,5) para PRESTO, 10,6 (± 17,3) para SWI e 8,3 (± 13,6) para 2D-GRE. Neste quesito não houve diferença estaticamente significativa entre PRESTO e SWI (p = 0,359) e ambos foram superiores a 2D-GRE (p < 0,05). A concordância foi fraca a moderada, provavelmente devido ao alto número de lesões falso-positivas encontradas (490), das quais 53,9% representavam lesões relacionadas a NCC em estágios não calcificados. A sensibilidade e especificidade das sequências estudadas em identificar corretamente indivíduos com NCC em estágio calcificado foi respectivamente de 85% e 100% para 2D-GRE, 90% e 100% para SWI e 93% e 100% para PRESTO. Conclusão: As sequências SWI, PRESTO e 2D-GRE apresentam boa sensibilidade na identificação de lesões calcificadas em pacientes com NCC. As sequências SWI e PRESTO tiveram melhor performance do que 2D-GRE. Todas as sequências estudadas mostrarem-se apropriadas para identificar indivíduos com NCC no estágio de calcificação. Sequências ponderadas em suscetibilidade magnética podem ajudar no entendimento da história natural, fisiopatologia e achados de imagem da NCC / Background: Neurocysticercosis (NCC) is the main preventable cause of acquired epilepsy. NCC, besides being the most common parasitic disease of the CNS, is an important public health problem, mainly in developing countries. Neuroimaging studies are crucial in the diagnosis and therapeutic planning of NCC. Although magnetic resonance imaging (MRI) provides countless and more detailed information about the disease, computed tomography (CT) is still the most sensitive method for detecting intracranial calcification, the most common radiological finding of NCC. Purpose: To compare the diagnostic performance of susceptibility-weighted MRI sequences in identification of intracranial calcifications in patients with NCC. Methods: A prospective study with 57 subjects who underwent CT and MRI of the brain. All individuals came from Department of Neurology of the Hospital das Clínicas - Faculdade de Medicina da Universidade de São Paulo (HC-FMUSP), with a stablished diagnosis of NCC. The MRI protocol included a conventional 2D gradient echo sequence (2D-GRE) and two relatively new susceptibility-weighted sequences: susceptibility-weighted imaging (SWI) and principles of echo shifting with a train of observations (PRESTO). CT was considered the standard reference method. Two neuroradiologists, blinded to clinical data and other radiological findings, independently analyzed the 2D-GRE, SWI and PRESTO sequences on behalf to presence, number and sites of intracranial calcifications attributed to NCC. Results: A total of 739 NCC-related calcified lesions were identified by CT in 50 of the 57 subjects included in the study. The mean number of calcified lesions per patient was 12.9 (± 19.8). The mean number of lesions found by the susceptibility-weighted MRI sequences, obtained through the mean of the observers\' results, was 10.8 (± 17.5) for PRESTO, 10.6 (± 17.3) for SWI and 8.3 (± 13.6) for 2D-GRE. There was no statistically significant difference between PRESTO and SWI (p = 0.359) and both were superior to 2D-GRE (p < 0.05). The concordance was weak to moderate, probably due to the high number of false-positive lesions found (490), of which 53.9% represented NCC-related lesions in non-calcified stages. The sensitivity and specificity of the sequences studied in correctly identifying individuals with calcified NCC were 85% and 100% respectively for 2D-GRE, 90% and 100% for SWI and 93% and 100% for PRESTO. Conclusion: SWI, PRESTO and 2D-GRE sequences have good sensitivity in the identification of calcified lesions in patients with NCC. SWI and PRESTO performed better than 2DGRE. All sequences studied are suitable for identifying individuals with NCC in the calcified stage. The new susceptibility-weighted MRI sequences may help in understanding the natural history, pathophysiology and imaging findings of NCC

Magnetic resonance imaging is an essential tool for assessing soft tissues. The desire for increased signal-to-noise and improved tissue contrast has spurred development of imaging systems operating at magnetic fields exceeding 3.0 Tesla (T). Unfortunately, traditional imaging methods are of limited utility on these systems. Novel imaging methods are required to exploit the potential of high field systems and enable innovative clinical studies. This thesis presents methodological advances for human brain imaging at 4.7 T. These methods are applied to assess sub-cortical gray matter in multiple sclerosis (MS) patients. Safety concerns regarding energy deposition in the patient precludes the use of traditional fast spin echo (FSE) imaging at 4.7 T. Reduced and variable refocusing angles were employed to effectively moderate this energy deposition while maintaining high signal levels; an assortment of time-efficient FSE images are presented. Contrast changes were observed at low angles, but images maintained a clinically useful appearance. Heterogeneous transmit fields hinder the measurement of transverse relaxation times. A post-processing technique was developed to model the salient signal behaviour and enable accurate transverse relaxometry. This method is robust to transmit variations observed at 4.7 T and improves multislice imaging efficiency. Gradient echo sequences can exploit the magnetic susceptibility difference between tissues to enhance contrast, but are corrupted near air/tissue interfaces. A correction method was developed and employed to reliably produce a multitude of quantitative and qualitative image sets. Using these techniques, transverse relaxation times and susceptibility field shifts were measured in sub-cortical nuclei of relapsing-remitting MS patients. Abnormalities in the globus pallidus and pulvinar nucleus were observed in all quantitative methods; most other regions differed on one or more measures. Correlations with disease duration were not observed, reaffirming that the disease process commences prior to symptom onset. The methods presented in this thesis enable efficient qualitative and quantitative imaging at high field strength. Unique challenges, notably patient safety and field variability, were overcome via sequence implementation and data processing. These techniques enable visualization and measurement of unique contrast mechanisms, which reveal insight into neurodegenerative diseases, including widespread sub-cortical gray matter damage in MS.

No description available.

Introdução: Neurocisticercose (NCC) é a principal causa evitável de epilepsia adquirida no mundo. NCC, além de ser, a doença parasitária mais comum do SNC, representa um importante problema de saúde pública, especialmente em países em desenvolvimento. Estudos de neuroimagem são cruciais no diagnóstico e planejamento terapêutico da NCC. Apesar da ressonância magnética (RM) fornecer maior número e detalhe de informações sobre a doença, a tomografia computadorizada (TC) ainda é o método mais sensível na detecção de calcificação intracraniana, o achado radiológico mais comum da NCC. Objetivo: Comparar performance das sequências de RM ponderadas em suscetibilidade magnética na identificação de calcificações intracranianas em pacientes com NCC. Métodos: Estudo prospectivo, unicêntrico, no qual 57 indivíduos foram submetidos a TC e RM de crânio. Todos os indivíduos foram provenientes do Ambulatório de Doenças Infecciosas do Departamento de Neurologia do Hospital das Clínicas - Faculdade de Medicina da Universidade de São Paulo (HC-FMUSP), com diagnóstico confirmado de NCC. O protocolo de RM incluiu uma sequência convencional 2D gradiente eco (2D-GRE) e duas relativamente novas sequências de suscetibilidade magnética: susceptibilityweighted imaging (SWI) e principles of echo shifting with a train of observations (PRESTO). A TC foi considerada método padrão de referência. Dois neurorradiologistas, cegos para os dados clínicos e demais achados radiológicos, analisaram independentemente as sequências 2D-GRE, SWI e PRESTO quanto à presença, número e localizações de calcificações intracranianas atribuídas a NCC. Resultados: Foram identificadas, pela TC, 739 lesões calcificadas relacionadas a NCC em 50 dos 57 indivíduos incluídos no estudo. A média de lesões calcificadas por paciente foi de 12,9 (± 19,8). A médias de lesões encontradas pelas sequências de suscetibilidade magnética, obtido através da média dos resultados dos observadores, foi de 10,8 (± 17,5) para PRESTO, 10,6 (± 17,3) para SWI e 8,3 (± 13,6) para 2D-GRE. Neste quesito não houve diferença estaticamente significativa entre PRESTO e SWI (p = 0,359) e ambos foram superiores a 2D-GRE (p < 0,05). A concordância foi fraca a moderada, provavelmente devido ao alto número de lesões falso-positivas encontradas (490), das quais 53,9% representavam lesões relacionadas a NCC em estágios não calcificados. A sensibilidade e especificidade das sequências estudadas em identificar corretamente indivíduos com NCC em estágio calcificado foi respectivamente de 85% e 100% para 2D-GRE, 90% e 100% para SWI e 93% e 100% para PRESTO. Conclusão: As sequências SWI, PRESTO e 2D-GRE apresentam boa sensibilidade na identificação de lesões calcificadas em pacientes com NCC. As sequências SWI e PRESTO tiveram melhor performance do que 2D-GRE. Todas as sequências estudadas mostrarem-se apropriadas para identificar indivíduos com NCC no estágio de calcificação. Sequências ponderadas em suscetibilidade magnética podem ajudar no entendimento da história natural, fisiopatologia e achados de imagem da NCC / Background: Neurocysticercosis (NCC) is the main preventable cause of acquired epilepsy. NCC, besides being the most common parasitic disease of the CNS, is an important public health problem, mainly in developing countries. Neuroimaging studies are crucial in the diagnosis and therapeutic planning of NCC. Although magnetic resonance imaging (MRI) provides countless and more detailed information about the disease, computed tomography (CT) is still the most sensitive method for detecting intracranial calcification, the most common radiological finding of NCC. Purpose: To compare the diagnostic performance of susceptibility-weighted MRI sequences in identification of intracranial calcifications in patients with NCC. Methods: A prospective study with 57 subjects who underwent CT and MRI of the brain. All individuals came from Department of Neurology of the Hospital das Clínicas - Faculdade de Medicina da Universidade de São Paulo (HC-FMUSP), with a stablished diagnosis of NCC. The MRI protocol included a conventional 2D gradient echo sequence (2D-GRE) and two relatively new susceptibility-weighted sequences: susceptibility-weighted imaging (SWI) and principles of echo shifting with a train of observations (PRESTO). CT was considered the standard reference method. Two neuroradiologists, blinded to clinical data and other radiological findings, independently analyzed the 2D-GRE, SWI and PRESTO sequences on behalf to presence, number and sites of intracranial calcifications attributed to NCC. Results: A total of 739 NCC-related calcified lesions were identified by CT in 50 of the 57 subjects included in the study. The mean number of calcified lesions per patient was 12.9 (± 19.8). The mean number of lesions found by the susceptibility-weighted MRI sequences, obtained through the mean of the observers\' results, was 10.8 (± 17.5) for PRESTO, 10.6 (± 17.3) for SWI and 8.3 (± 13.6) for 2D-GRE. There was no statistically significant difference between PRESTO and SWI (p = 0.359) and both were superior to 2D-GRE (p < 0.05). The concordance was weak to moderate, probably due to the high number of false-positive lesions found (490), of which 53.9% represented NCC-related lesions in non-calcified stages. The sensitivity and specificity of the sequences studied in correctly identifying individuals with calcified NCC were 85% and 100% respectively for 2D-GRE, 90% and 100% for SWI and 93% and 100% for PRESTO. Conclusion: SWI, PRESTO and 2D-GRE sequences have good sensitivity in the identification of calcified lesions in patients with NCC. SWI and PRESTO performed better than 2DGRE. All sequences studied are suitable for identifying individuals with NCC in the calcified stage. The new susceptibility-weighted MRI sequences may help in understanding the natural history, pathophysiology and imaging findings of NCC

<p>MR phase images contain essential information about local magnetic susceptibility sources in the brain, creating a new type of contrast in magnetic resonance imaging (MRI). The goal of this thesis is to demonstrate with a model of the brain how accurately the transformation of phase to susceptibility takes place.</p> <p>A 3D brain model uses the Forward process to calculate magnetic field perturbations caused by susceptibility properties of the tissues in the model. Homodyne High Pass (HP) filter and SHARP algorithm are used to process the simulated phase images. Similarly, MR magnitude data are simulated using tissue properties such as T₁, T₂^* relaxation times and spin density.</p> <p>The halo ring around red nucleus in the real phase data is believed to be an indicator of a capsule around red nucleus. Similar effect is seen in the simulated phase images without including the capsule of red nucleus in the model, this comparison explains that the halo effect may just be entirely or a part of the phase behavior around red nucleus. A negative susceptibility in the internal capsule region, seen in both simulated and real susceptibility maps, is discussed as a possible artifact caused by the processing techniques after comparing the simulated susceptibility maps produced from unprocessed and processed phase data. The brain model is used to determine the optimum echo time of the initial gradient echo sequence in order to produce a high quality susceptibility map with reasonably low error and better time efficiency.</p> / Master of Applied Science (MASc)