A localização cromossômica do DNA ribossômico (rDNA) foi estudada em cromossomos politênicos e em tecidos diplóides de quatro espécies de sciarídeos: Trichosia pubescens; Rhynchosciara americana; R. milleri e Schwenkfeldina sp.. Resultados de hibridação em cromossomos mitóticos mostraram a existência de um único locus de rDNA; entretanto, sondas ribossomais hibridaram em mais de uma região dos cromossomos politênicos em todas as espécies analisadas devido à adesão de micronucléolos em regiões específicas dos cromossomos. Os micronucléolos são estruturas arredondadas que contêm, provavelmente, DNA extracromossômico transcricionalmente ativo. Em T. pubescens, o rDNA está predominantemente localizado nas secções cromossômicas X-10 e X-8. Em R. americana o rDNA está freqüentemente associado à heterocromatina centromérica dos cromossomos X, C, B e A, e também às secções X-1 e B-13. Sondas ribossômicas em R. milleri hibridaram, em alta freqüência, em regiões teloméricas e pericêntricas de cromossomos politênicos. Schwenkfeldina sp. apresenta uma distribuição incomum do rDNA em núcleos politênicos, caracterizada pela adesão de micronucléolos em muitas regiões cromossômicas. Os resultados mostraram que os micronucléolos estão preferencialmente associados à heterocromatina intercalar ou terminal de todos os sciarídeos analisados e, dependendo da espécie, estão aderidos a um número pequeno (Trichosia), moderado (Rhynchosciara) e grande (Schwenkfeldina sp.) de sítios em cromossomos politênicos. Este trabalho também descreve a caracterização de seqüências presentes nas extremidades cromossômicas de R. americana, que se iniciou através da triagem de uma microbiblioteca plasmidial, feita a partir de uma extremidade microdissecada B-1. Uma repetição do tipo satélite foi identificada e sua composição de bases, estrutura genômica e localização cromossômica são semelhantes às repetições teloméricas complexas de Nematocera que já foram descritas. Contudo, dados obtidos em outras espécies de Rhynchosciara, assim como a localização desse satélite e da transcriptase reversa, sugerem que o elemento repetitivo caracterizado neste trabalho não atinge as extremidades dos cromossomos. A caracterização de seqüências terminais e subterminais presentes nos cromossomos de R. americana foi continuada através da triagem de uma biblioteca de DNA desse díptero clonada em fagos Dash. Escolhemos como sonda para a triagem o clone pRaM47.33, representativo do elemento repetitivo M22, caracterizado em R. americana. Foram analisados cerca de 12kb de um único inserto de fago, que continha, alem das repetições M22, uma nova repetição de 16pb, organizada em tandem e que denominamos de M16. Resultados de hibridações in situ revelaram a presença da repetição M16 nas 5 extremidades cromossômicas não-telocêntricas de R. americana. Essa repetição também foi utilizada como sonda em uma outra triagem da mesma biblioteca genômica, o que permitiu a seleção e análise de aproximadamente 50kb de DNA cromossômico terminal de R. americana. Encontramos também, ao longo dessas 50kb de DNA analisado, repetições de 414pb anteriormente caracterizadas em R. americana; parte de seqüências do transposon Ramar1 e do retrotransposon RaTART . Além disso, foram observadas também seqüências que não apresentam semelhança significativa com seqüências depositadas no banco de dados GenBank, e que tampouco apresentam motivos repetitivos. Os resultados obtidos apontam para a possibilidade de que a região telomérica de R. americana seja composta por mais de um tipo de elemento repetitivo. / The chromosomal localization of ribosomal DNA (rDNA) was studied in polytene and diploid tissues of four sciarid species, Trichosia pubescens, Rhynchosciara americana, R. milleri and Schwenkfeldina sp. While hybridization to mitotic chromosomes showed the existence of a single rDNA locus, ribosomal probes hybridized to more than one polytene chromosome region in all the species analyzed as a result of micronucleolar attachment to specific chromosome sites. Micronucleoli are small, round bodies containing transcriptionally active, probably extrachromosomal rDNA. In T. pubescens the rDNA is predominantly localized in chromosome sections X-10 and X-8. In R. americana the rDNA is frequently found associated with centromeric heterochromatin of the chromosomes X, C, B and A, and also with sections X-1 and B-13. Ribosomal probes in R. milleri hybridized with high frequency to pericentric and telomeric regions of its polytene complement. Schwfenkfeldina sp. displays a remarkably unusual distribution of rDNA in polytene nuclei, characterized by the attachment of micronucleoli to many chromosome regions. The results showed that micronucleoli preferentially associate with intercalary or terminal heterochromatin of all sciarid flies analyzed and, depending on the species, are attached to a few (Trichosia), moderate (Rhynchosciara) or a large (Schwenkfeldina sp.) number of polytene chromosome sites. This work also describes the characterization of chromosome end sequences of Rhynchosciara americana, initiated with the screening of a plasmid microlibrary made from a microdissected polytene chromosome end. We report the identification and sequencing of an R. americana satellite displaying base composition, genomic structure and chromosomal localization similar to the complex telomeric repeats of Nematocera that have previously been characterized. However, data obtained in other Rhynchosciara species, as well as distinct chromosomal localization of satellite and reverse transcriptase loci in R. americana, suggest that the repetitive element characterized does not reach the very end of the chromosome. The characterization of chromosome end sequences of Rhynchosciara americana continued with the screening of a phage library made with its genomic DNA. We choose pRaM47.33, a clone whose insert is a repetitive microsatellite characterized in the subtelomeric region of R. americana chromosomes, as a probe for the screening. We analyzed 12kb of a single phage insert, composed of M22 tandem arrays and a new microsatellite which was 16pb long, arranged in tandem (named M16). In situ hybridization showed the presence of M16 repeats in the five telomeric termini of R. americana chromosomes. The M16 repeat was used as a probe in another screen of the same phage library, which allowed us to analyze approximately 50kb of terminal DNA. We find that repetitive sequences, such as the 414pb repeat previously characterized in R. americana and stretches of Ramar1 and RaTART mobile elements, also characterized in R. americana, compose the subtelomeric region of R. americana chromosomes. Additionally, we find sequences that do not match sequences in the GenBank database and do not present repetitive motifs. Our results suggest that the telomeric regions of R. americana chromosomes are composed of more than one type of repetitive sequence.

O estresse crônico promove diversas alterações no funcionamento de um organismo. O aumento de glicocorticoides pode interferir no estado físico e psicológico de um individuo. Trabalhos recentes correlacionam estresse psicossocial crônico à redução do comprimento dos telômeros de determinadas células. E o estrógeno, além de ser um fator modulador da atividade do sistema de estresse, também pode interferir no comprimento dos telômeros. O objetivo desse trabalho foi verificar se a exposição crônica aos glicocorticóides promove alterações no comprimento dos telômeros de áreas encefálicas envolvidas no controle da atividade do eixo Hipotálamo-Hipófise-Adrenal (HPA) e em respostas comportamentais de ratas, e se o estrógeno pode modular essas alterações. Ratas Wistar ovariectomizadas foram tratadas com cipionato de estradiol (50 ou 100 µg/kg, s.c.) ou óleo, e submetidas à administração de corticosterona 20 mg/Kg ou veículo (salina isotônica 2% Tween 80, s.c.), durante 28 dias. No 25 º dia os animais foram submetidos ao teste do nado forçado, e no 27º dia, ao teste de labirinto em cruz elevado. No dia subsequente ao término do tratamento hormonal, os animais foram eutanasiados para coleta do sangue, cérebro e hipófise. O tratamento com cipionato de estradiol causou: aumento das concentrações plasmáticas de corticosterona e progesterona; redução da expressão de mRNA para CRH, AVP e POMC no PVN; um efeito ansiolítico a avaliado pelo teste do labirinto em cruz elevado; . um efeito depressivo indicado pelo teste de nado forçado; reduziu o tamanho dos na amígdala central e hipocampo dorsal, mas não no PVN. A corticosterona causou: redução da secreção de gonadotrofina; redução da expressão de RNA mensageiro para CRH e POMC e aumento para AVP no PVN; um efeito depressivo indicado pelo teste de nado forçado. O conjunto de resultados mostra que modificação na atividade do eixo HPA e a variação das concentrações plasmáticas de estrógeno podem provocar diversas alterações de ações hormonais, atividades comportamentais e de estrutura do DNA em áreas cerebrais. / Chronic stress promotes several changes in the functioning of an organism. Increased glucocorticoids may interfere with an individual\'s physical and psychological state. Recent works correlate chronic psychosocial stress to the reduction of the telomere length of certain cells. And estrogen, besides being a modulating factor of the activity of the stress system, can also interfere in the length of telomeres. The objective of this study was to verify if chronic exposure to glucocorticoids promotes changes in telomere length of encephalic areas involved in the control of hypothalamic-hypophysis-adrenal (HPA) axis activity and in rat behavioral responses, and whether estrogen can modulate these changes. Ovariectomized Wistar rats were treated with estradiol cypionate (50 or 100 ?g / kg, s.c.) or oil, and given 20 mg / kg corticosterone or vehicle (isotonic saline 2% Tween 80, s.c.) for 28 days. On the 25th day the animals were submitted to the forced swim test, and on the 27th day, the elevated plus maze test. On the day after the end of the hormonal treatment, the animals were euthanized for collection of blood, brain and pituitary gland. Treatment with estradiol cypionate caused: increased corticosterone and progesterone plasma concentrations; reduction of mRNA expression for CRH, AVP and POMC in PVN; an anxiolytic effect as assessed by the elevated plus maze test. A depressive effect indicated by the forced swim test; reduced size in the central amygdala and dorsal hippocampus, but not in PVN. Corticosterone caused: reduction of gonadotrophin secretion; reduction of mRNA expression for CRH and POMC and increase for AVP in PVN; a depressive effect indicated by the forced swim test. The set of results shows that changes in HPA axis activity and variation in plasma estrogen concentrations can lead to several changes in hormonal actions, behavioral activities and DNA structure in brain areas.

Les télomères sont des structures critiques situées aux deux extrémités des chromosomes linéaire et empêchent que ces derniers soient dégradés, sujet à des réparations aberrantes ou subissent des recombinaisons homologues. Ces régions particulières sont compactées sous une forme de chromatine très dense que l’on nomme l’hétérochromatine. Une étape clef dans l’établissement et la maintenance de l’hétérochromatine est la tri-méthylation de l’histone H3 en lysine 9 (H3K9me3). Cette marque sert de point d’ancrage pour un certain nombre de protéines qui vont ensuite permettre de propager un environnement répressif. Les télomères étant hétérochromatiques, sont enrichis en H3K9me3 qui est déposée par l’histone methyltransférase SUV39H. Pourtant, la relation entre cette modification H3K9me3 et les télomères a été très peu étudiée. Il a été suggéré que cette marque est impliquée dans l’homéostasie de la taille des télomères, mais la fonction de H3k9me3 reste largement inconnue. Pendant ma thèse, j’ai empêché la catalyse de H3K9me3 aux télomères en supprimant l’histone methyltransférase responsable. Comme modèle d’étude j’ai travaillée sur des cellules embryonnaires de souris (mESC), étant donné que ces cellules de mammifère ont de très longs télomères hétérochromatiques. De façon surprenante, j’ai découvert que c’est l’enzyme SETDB1 qui installe H3K9me3 aux télomères de mESC. J’ai purifiée et comparée les changements de la composition moléculaire de télomères n’ayant plus d’histones trimethylés en lysine 9 (dans des cellules mESC ou SETDB1 est « knocked-out » (KO)) à des télomères sauvages en utilisant la technique de PICh (Proteomics of Isolated Chromatin segments) sur des cellules cultivées en SILAC (Stable Isotope Labelling Amino Aacids). J’ai montré que H3K9me3 contrôle le recrutement de chaperonnes d’histones; et de façon plus surprenante, cette marque semblerait contrôler l’élongation et/ou inhiber la terminaison de la transcription des télomères. En effet les télomères sont transcrits en un long ARN non-codant appelé TERRA. Nos données préliminaires suggèrent que cette voie n’est pas restreinte aux télomères mais aussi à d’autres gènes qui sont sous le contrôle de SETDB1. Il semblerait que la trimethylation de H3K9 dans le corps du gène est nécessaire pour maintenir la processivité de l’ARN polymérase II. Mes données suggèrent que SETDB1 contrôle la trimethylation de H3K9 aux télomères et dans certains corps de gènes ce qui est crucial pour la transcription générale dans les cellules embryonnaires de souris. / Telomeres are critical regions that protect chromosome ends from degradation or aberrant repair. These regions are assembled into heterochromatin. Trimethylation of histone H3 on lysine 3 (H3K9me3) is a biochemical modification found at telomeres and essential in the establishment and maintenance of constitutive heterochromatin. During my thesis, I investigated the function of H3K9 trimethylation. According to my data, this hallmark is deposited by SETDB1 at the telomeres in mouse embryonic stem cells. Using the quantitative PICh method, I showed that this mark controls the recruitment of histone chaperones. Heterochromatin is typically believed to repress gene expression but my data suggests that at telomeres, the H3K9me3 mark instructs transcriptional elongation and/or inhibit transcriptional termination of telomeres into the non-coding RNA TERRA. Preliminary data even suggest this pathway is not only restricted to telomeres but also to other genes under the control of SETDB1. It seems that H3K9 trimethylation in the gene body is necessary to maintain RNA polymerase II processivity. My data suggests SETDB1 controls H3K9 trimethylation at telomeres and gene bodies which is crucial for general transcriptional in mouse embryonic stem cells.

Aging is an underlying risk factor for many major diseases including cancer, cardiovascular disease, and neurodegeneration. Yet we still do not know the full extent of how our bodies age and what determines our lifespan. One mechanism that may play an important role are telomeres, which are protective caps at the end of chromosomes. Telomeres are directly linked to longevity and can be lengthened by the enzyme telomerase. Early life telomere length is critical for lifespan, but we do not know how telomerase performs during this period. Whether variation in telomerase levels can influence telomere length and loss during development with consequences to longevity is still unknown. This thesis focuses on the role of telomerase during post-natal development and its response to stressors and activators with effects on telomeres. Taken together this research enhances our understanding of how telomerase acts and influences telomere during post-natal development.

No description available.

Telomere shortening is observed in peripheral mononuclear cells from patients with major depressive disorder (MDD). Whether this finding and its biological causes impact the health of the brain in MDD is unknown. Brain cells have differing vulnerabilities to biological mechanisms known to play a role in accelerating telomere shortening. Here, two glia cell populations (oligodendrocytes and astrocytes) known to have different vulnerabilities to a key mediator of telomere shortening, oxidative stress, were studied. The two cell populations were separately collected by laser capture micro-dissection of two white matter regions shown previously to demonstrate pathology in MDD patients. Cells were collected from brain donors with MDD at the time of death and age-matched psychiatrically normal control donors (N=12 donor pairs). Relative telomere lengths in white matter oligodendrocytes, but not astrocytes, from both brain regions were significantly shorter for MDD donors as compared to matched control donors. Gene expression levels of telomerase reverse transcriptase were significantly lower in white matter oligodendrocytes from MDD as compared to control donors. Likewise, the gene expression of oxidative defence enzymes superoxide dismutases (SOD1 and SOD2), catalase (CAT) and glutathione peroxidase (GPX1) were significantly lower in oligodendrocytes from MDD as compared to control donors. No such gene expression changes were observed in astrocytes from MDD donors. These findings suggest that attenuated oxidative stress defence and deficient telomerase contribute to telomere shortening in oligodendrocytes in MDD, and suggest an aetiological link between telomere shortening and white matter abnormalities previously described in MDD.

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第20929号 / 理博第4381号 / 新制||理||1630(附属図書館) / 京都大学大学院理学研究科化学専攻 / (主査)教授 杉山 弘, 教授 三木 邦夫, 教授 秋山 芳展 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DGAM

Objective: Child maltreatment (CM) is a widespread problem associated with poor mental and physical health outcomes. The underlying mechanisms of this link are not always well understood, however certain biological changes observed in maltreated individuals may play a role in connecting experience and outcome. This review specifically focuses on two markers of biological embedding, DNA methylation (DNAm) and telomere length (TL) in maltreated children and youth. As biomarker changes are not uniform among maltreated children, we additionally discuss biological and environmental resilience factors that may contribute to variability. Methods: We conducted a systematic review of Medline, Embase and PsycInfo databases for studies examining DNAm and/or TL in maltreated children and youth. Methodological quality of the included articles was assessed using the Scottish Intercollegiate Guidelines Network (SIGN) checklists for cohort studies and randomized control trials. Data extraction focused on various factors including population and CM (type, chronicity, severity, and duration) characteristics. Results: The initial search returned 1,688 non-duplicate results, with 417 full text articles reviewed. Twenty-six articles from 16 studies were ultimately included of which 8 examined telomere length and 18 examined DNA methylation. Conclusions: While some heterogeneity of findings was found, evidence supports differential changes in both biomarkers associated with CM. This review enhances understanding of the constellation of biological changes related to CM and consideration of the important role of resilience factors in mitigating risk. Elucidating these factors may highlight targets for future study and intervention development. / Thesis / Master of Science (MSc) / Child maltreatment is a serious problem linked to poor mental and physical health outcomes. The mechanisms of these links are not always clear, however biological changes observed in some maltreated individuals may play a role. Here, we systematically review literature related to two biomarkers of interest in maltreated children, telomere length and DNA methylation. Findings are varied; however, overall, they support an association between child maltreatment and changes in both biomarkers. We additionally discuss factors that may confer resilience related to these changes to highlight potential targets for future study and interventions.

TRF1, telomeric-repeat binding factor 1, is a component of the six-subunit protein complex, referred to as shelterin, which is essential for not only regulating telomere length maintenance but also protecting mammalian telomeres from being recognized as damaged DNA. TRF1 acts as a negative mediator of telomerase-dependent telomere elongation in telomerase-expressing cells, whereas it promotes alternative lengthening of telomeres (ALT) activity by regulating ALT features including the production of extrachromosomal telomere-repeat (ECTR) DNA such as C-circles, and ALT-associated promyelocytic leukemia bodies, or APBs. The activity of TRF1 is tightly regulated by post-translational modification such as phosphorylation. This thesis sets out to investigate the function of TRF1 phosphorylation on threonine-271 (T271) and threonine-371 in telomere maintenance. The results presented in this thesis demonstrate that TRF1 phosphorylation on T271 positively regulates the association of TRF1 to telomeric DNA in telomerase expressing cells. In ALT cells, TRF1 phosphorylation on both T271 and T371 is shown to be important for the formation of APBs. Furthermore, the work presented here suggests that transcription-associated DNA damage mediates the association of phosphorylated (pT371)TRF1 with APBs. / Thesis / Master of Science (MSc) / TRF1, telomeric-repeat binding factor 1, is a component of the shelterin complex, which is essential for regulating telomere length maintenance and protecting mammalian telomeres from being recognized as damaged DNA. TRF1 acts as a negative mediator of telomerase-dependent telomere elongation in telomerase-expressing cells, whereas it promotes alternative lengthening of telomeres. The activity of TRF1 is tightly regulated by phosphorylation. This thesis sets out to investigate the function of TRF1 phosphorylation on threonine-271 and threonine-371 in telomere maintenance. Understanding how post-translational modifications on TRF1 may be linked to telomere homeostasis will be crucial for our understanding in cancer cell biology.

No description available.