Forests affect climate by absorbing CO₂ but also by altering albedo, latent heat flux, and sensible heat flux. In this study we used the Community Earth System Model to assess the biophysical effect of North American temperate forests on climate and how this effect changes with location, tree type, and forest management. We calculated the change in annual temperature and energy balance associated with afforestation with either needle leaf evergreen trees (NET) or broadleaf deciduous trees (BDT) and between forests with high and low leaf-area indices (LAI). Afforestation from crops to forests resulted in lower albedo and higher sensible heat flux but no consistent difference in latent heat flux. Forests were consistently warmer than crops at high latitudes and colder at lower latitudes. In North America, the temperature response from afforestation shifted from warming to cooling between 34° N and 40° N for ground temperature and between 21° N and 25° N for near surface air temperature. NET tended to have lower albedo, higher sensible heat flux and warmer temperatures than BDT. The effect of tree PFT was larger than the effect of afforestation in the south and in the mid-Atlantic. Increasing LAI, a proxy for increased management intensity, caused a cooling effect in both tree types, but NET responded more strongly and albedo decreased while albedo increased for BDT. Our results show that forests' location, tree type, and management intensity can have nearly equal biophysical effects on temperature. A forest will have maximum biophysical cooling effect if it is in the south, composed of broadleaf PFT, and is managed to maximize leaf area index. / Master of Science

A l’échelle mondiale, les prairies fournissent une grande variété de services écosystémiques et sont le support économique de nombreux systèmes d’élevage. Dans un contexte global éminemment changeant, une meilleure compréhension de la structure et du fonctionnement des prairies est incontournable pour proposer à la fois des gestions plus durables des ressources et promouvoir la fourniture de services écosystémiques diversifiés par ces écosystèmes. Les prairies étant des écosystèmes dynamiques et hétérogènes, notre capacité à prédire leur fonctionnement et leurs trajectoires de réponse à un facteur environnemental (climat, gestion) reste un défi scientifique important. Ainsi, dans des prairies pâturées, l’activité de grands herbivores va être facteur d’hétérogénéité des nutriments du sol via l'excrétion. Cependant les effets de ces apports nutritifs en « patchs » et de l'hétérogénéité spatiale du sol sur la structure et les propriétés de la prairie restent peu connus. L’objectif de cette thèse est d’examiner les effets de l'hétérogénéité spatiale de l'azote (N) dans le sol sur l’écosystème prairial, en portant une attention particulière sur les réponses des communautés végétales. Notre démarche a combiné des approches expérimentales et de modélisation pour analyser les impacts d'un certain nombre d'attributs de « patch » (différentes formes d’N, taille et contraste du patch), et leurs interactions possibles avec le régime de pluviométrie ou encore la date des apports en N. Nous montrons que des apports hétérogènes en N augmentent la production des plantes et la variabilité de la biomasse intra-parcelle quel que soit la forme d’N, mais qu’ils ne modifient pas, à court terme, la production à l’échelle de la parcelle prise dans son entier. Néanmoins, des apports hétérogènes d’N-organique favorisent l’asynchronie spatiale et temporelle entre les compartiments plante - sol, avec des implications pour le fonctionnement de la prairie à plus long terme. Contrairement à la production, la structure de la communauté végétale répond significativement à l’hétérogénéité en N, avec une dominance accrue de certaines espèces et un changement dans le rang des espèces subalternes. Contre toute attente, dans cette étude, la quantité de pluie ne modifie pas les effets de l'hétérogénéité sur la production et la structure de la communauté végétale. Des simulations réalisées avec un modèle spatialisé montrent que les effets de l'hétérogénéité sur la production à l’échelle de la parcelle varient selon la taille et le niveau de contraste du patch. Pour un même apport total en N, la production répond positivement à la taille de patch, mais elle diminue dans des conditions de fort contraste en comparaison à des conditions de faible contraste. Nous n’avons pas relevé d’interactions entre la taille de patch, le niveau de contraste de patch ou la date des apports en N sur la production de prairie. D’une manière générale, nos résultats soulignent l'importance de l’hétérogénéité en N pour les processus plante-sol à différentes échelles spatiales et montrent que les effets de l'hétérogénéité varient en fonction des attributs des patchs. Les interactions biotiques (ici la compétition) semblent jouer un rôle relativement plus important que les facteurs abiotiques (ici changements chroniques de pluviométrie) pour les effets d'hétérogénéité. Nous concluons que les impacts de l'hétérogénéité en N sur les processus plante-sol peuvent avoir des conséquences sur les rétroactions plante-sol impliquées dans la régulation des cycles biogéochimiques, et sont à même de fournir des informations utiles pour le développement de pratiques de gestion efficientes dans l’utilisation de l’N. / Grasslands provide a variety of important ecological and economic services worldwide. Improved understanding of grassland structure and function is necessary for the development of sustainable management and maintaining the provision of multiple ecosystem services in a changing environment. However, predicting grassland structure and function is a challenge because grasslands are dynamic, heterogeneous systems. In grazed grasslands, large herbivore activities promote heterogeneity in soil nutrients via excretion, but the effects of patchy nutrient inputs and soil spatial heterogeneity on grassland structure and function remain unclear. This thesis addresses effects of spatial heterogeneity in soil nitrogen (N) for grassland ecosystem structure and function, with particular emphasis on community responses. A combination of experimental and modelling approaches are used to study impacts of a number of different patch attributes (N form, patch size, patch contrast), as well as possible interactions with rainfall regime and timing of N inputs. We find that patchy N inputs enhance within plot-plant production and biomass variability irrespective of N form, but do not modify whole-plot plant production in the short term. Nevertheless, patchy organic N promotes spatial and temporal asynchrony in plant-soil responses, with implications for longer-term grassland function. Unlike plant production, community structure responds significantly to patchy N inputs, with increased community dominance and a shift in the rank of subordinate species. Contrary to expectations, rainfall quantity does not modify heterogeneity effects on either plant production or community structure. Modelling work shows that heterogeneity effects on field-scale production vary depending on patch size and patch contrast. For a fixed total N input, field-scale grassland production responds positively to patch size, but decreases in high- versus low-patch contrast conditions. Patch size does not interact with patch contrast or timing of N inputs on grassland production. Overall, our results highlight the importance of N heterogeneity for plant and soil processes at different spatial scales, and demonstrate that heterogeneity effects vary depending on patch attributes. Biotic interactions (competition) appear to play a relatively greater role than abiotic factors (chronic rainfall changes) for heterogeneity effects. Impacts of N heterogeneity on plant and soil processes may have significant implications on plant-soil feedbacks involved with the regulation of biogeochemical cycling, and provide useful information for the development of efficient N management strategies.

The Chatham Islands are located in the SW Pacific Ocean, approximately 850 km to the east of the South Island of New Zealand. This small group of islands is situated near the eastern margin of the Chatham Rise, an elongated section of submerged continental crust that represents part of the Late Paleozoic-Mesozoic Gondwana accretionary margin. The location and much of the geology of the Chatham Islands are attributed to intra-plate basaltic volcanism, initiated during the Late Cretaceous, in association with development of a failed rifting system to the south of the Chatham Rise. Despite the volcanic nature of much of the geology, the majority of the Cenozoic sedimentary stratigraphic record on the islands comprises non-tropical skeletal carbonate deposits whose deposition was often coeval with submarine volcanics and volcaniclastic deposits. This has resulted in complex stratigraphic relationships, with the volcanic geology exerting a strong influence on the geometry and distribution of the carbonate deposits. These limestones, despite some general field descriptions, have been little studied and are especially poorly understood from a petrographic and diagenetic perspective. The carbonate geology in detail comprises eleven discrete limestone units of Late Cretaceous through to Pleistocene age which were studied during two consecutive field expeditions over the summers of 2005 and 2006. These limestone occurrences are best exposed in scattered coastal outcrops where they form prominent rugged bluffs. While many of the younger (Oligocene to Pliocene) outcrops comprise of poorly exposed, thin and eroded limestone remnants (it;5 m thick), older (Late Paleocene to Early Oligocene) exposures can be up to 100 m in thickness. The character of these limestones is highly variable. In outcrop they display a broad range of textures and skeletal compositions, often exhibit cross-bedding, display differing degrees of porosity occlusion by cementation, and may include rare silicified horizons and evidence of hardground formation. Petrographically the limestones are skeletal grainstones and packstones with a typical compositional makeup of about 70% skeletal material, 10% siliciclasts, and 20% cement/matrix. Localised increases in siliciclastics occur where the carbonates are diluted by locally-derived volcaniclastics. The spectrum of skeletal assemblages identified within the Chatham Island limestones is diverse and appears in many cases to be comparable to the bryozoan dominant types common in mainland New Zealand and mid-latitude Australian cool-water carbonates in general. However, some key departures from the expected cool-water carbonate skeletal makeup have been identified in this study. The occurrence of stromatolitic algal mats in Late Cretaceous and Early Eocene carbonate deposits indicates not cool-temperate, but certainly warm-temperate paleoclimatic conditions. A change to cool-temperate conditions is recorded in the limestone flora/fauna from the mid-Late Miocene times following the development and later northward movement of the Subtropical Front. An uncharacteristic mix of shallow-shelf (bryozoans) and deeper water fauna (planktic foraminifera), together with their highly fragmented and abraded nature, is indicative of the likely remobilisation and redistribution of carbonate, primarily during episodic storm events. The Chatham Islands limestones formed within the relative tectonic stability of an oceanic island setting, which was conducive to ongoing carbonate accumulation throughout much of the Cenozoic. This contrasts markedly with other mainland New Zealand shelf carbonates which formed over sporadic and short-lived geological periods, experiencing greater degrees of burial cementation controlled by a relatively more active tectonic setting. As a consequence of the tectonically stable setting, the Chatham Islands limestones have experienced little burial and exhibit a paucity of burial cementation effects. They remain commonly soft and friable. Detailed petrographic investigations have shown the limestones are variably cemented by rare uneven acicular spar fringes, poorly to well-developed syntaxial rim cements about echinoderm fragments, and equant/blocky microsparite. Staining of thin sections and cathodoluminescence petrography show these spar cement generations are non-ferroan and their very dull- to non-luminescent nature supports precipitation from Mn-poor oxygenated waters, likely of an either meteoric or combined marine/shallow burial origin. Micrite is the dominant intra- and inter-particle pore fill and occurs both as a microbioclastic matrix and as precipitated homogenous and/or micropeloidal cement. The rare fringing cements often seen in association with homogenous and/or micropeloidal micrite may be indicative of true early marine (seafloor) cement precipitation and localised hardground development. An interesting feature of the geology of the Chatham Islands is the occurrence of carbonate material within sedimentary dykes. The locations of the dykes are in association with volcanic and volcaniclastic deposits. Similarities between dyke characteristics at Red Bluff on Chatham Island with mainland occurrences from East Coast and Canterbury Basins (North and South Islands, respectively) on mainland New Zealand have been recognised. They show complex structures including sidewall striations, internal flow structures as revealed by grain sorting, and extra-clast inclusions of previous fill lithologies which are characteristic of carbonate injection. This is in contrast to other dykes which are known to be of a passive fill origin. Multiple phases of carbonate sediment injection can be recognised by crosscutting relationships enabling the determination of a parasequence of events. Possible injection mechanisms are most likely associated with sediment overloading or hydrothermal pressurisation associated with emplacement of submarine volcanics. The Chatham Islands provide an exciting example of a geologically unique and complex non-tropical carbonate depositional setting. The production of carbonates is controlled by volcanic and volcaniclastic sediment input with the types of carbonate deposits and water depth variations related to thermal uplift/subsidence in association with global eustatic sealevel and temperature changes associated with development of Southern Ocean water fronts from the Late Cretaceous-Cenozoic. Carbonate deposition on the Chatham Islands is considered to relate to a rather variable and small scale oceanic, high energy, cool-water carbonate ramp setting whose geometry was continually evolving/changing as a consequence of periodic volcanic episodes.

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Vegetation changes in Czech lowland forests over the past decades Martin Kopecký ABSTRACT To explore decadal changes in plant species diversity and composition of typical lowland forests in the Czech Republic, I compared vegetation on plots sampled decades ago with vegetation on the same plots sampled recently. First I evaluated the robustness of the approach used in my thesis. In Chapter 1, we provided the first direct test of the effect of uncertainty in original plot location on results from vegetation resurvey. We found that temporal trends in vegetation diversity and composition were comparable between exactly relocated permanent and only approximately relocated semi-permanent plots. Therefore, we conclude that the resurvey of semi-permanent plots is robust to the uncertainty in original plot location. Then, we showed that vegetation in lowland oak forest shifted from species-rich communities of thermophilous forest toward species poorer communities of mesic forest (Chapter 2). The species typical for thermophilous oak forests and nationally endangered species suffered the most significant decline. We identified as the main driver behind these changes shift from traditional coppicing toward high forest management after WWII. Further, we explored the processes behind temporal shifts in species diversity...

Plants often occur aggregated into clusters and this spatial pattern is supposed to affect pollinator behaviour and pollen dispersal. Such pollinator reaction may influence reproductive success of zoogamous plant species both in terms of number of available mates and their genetic diversity (nearby growing plant individuals are also often closely related, especially in clonal plants). In the present thesis, I investigated the influence of plant spatial aggregation on pollinator behaviour and how this translates into pollen transfer. For that purpose, I carried three experiments. In the Experiment 1, I used potted plants placed into arrays and aggregated into four patches in order to track the pollen dispersal by means of a UV-dye pollen analogue. I manipulated distances between plants within clusters (dense × loose) and between clusters (near × far). I conducted this experiment for three plant species differing in their pollinator spectra. In the Experiment 2, I observed pollinator foraging sequences (sequences of visited plant individuals) under the same experimental design as for the first experiment, but I carried out this experiment for five plant species. In addition in one study species, Dianthus carthusianorum, I conducted the Experiment 3 to get better insight into pollination effectiveness...