The use of a chemical template to control the spatial arrangement of reactants revolutionized the synthesis of mechanically interlocked molecules. The recently developed ‘active metal template’ strategy, in which transition metal ions act as both the template to guide interlocking and as the catalyst for the covalent bond forming reaction that captures the interlocked structure, has several advantages in comparison with traditional ‘passive template’ approaches. In contrast with passive template approaches the active template strategy is more efficient, completing the assembly of the interlocked structure in one step instead of two and in some cases requiring only a substoichiometric amount of metal template. In addition, fewer permanent recognition sites are required and in certain cases the active template reaction can shed light on mechanistic details of related metalcatalyzed processes and act as a conduit for reaction discovery. This Thesis will discuss the expansion of this new methodology in two main directions: firstly, exploration of new active metal template reactions, specifically the application of a novel Ni catalyzed sp3–sp3 C–C bond forming reaction, and secondly, the application of previously developed active template reactions to the synthesis of agrochemical-based [2]rotaxanes and other architectures, macrobicyclic [3]rotaxanes, [2]catenanes and a trefoil knot.

In this article, we examined different synthetic approaches with varying adding starting materials for the thiol containg schiff-base complex [ZnL1]2(L1=o-C6H4(SH)(CH=NC6H4SH-o)). We found that the key step for successful synthesis of [ZnL1]2 is the formation of zinc aldehyde intermediate. We also break the [ZnL2]2 dimer by adding chelating agent, TMEDA, to obtain the Zn(L1)(TMEDA) monomer. It¡¦s single crystal X-ray structure confirmed, the structure of the target ligand L1. We also synthesized [NiL1]2 by transmetalation of [ZnL1]2 - an easier synthetic approach. We further reduced the imine part on L1 of [ZnL1]2 and Zn(L1)(TMEDA) to get [ZnL2]2(L2=o-C6H4(SH)(CH2NHC6H4SH-o)) and Zn(L2)(TMEDA) respectively for future reactivity studies.

This Thesis explores the topic of large amplitude motion within molecular machines and the different mechanisms and molecular architectures that are exploited in order to achieve control over the relative positions of submolecular components with respect to one another. Chapter One provides a thorough survey of a vast range of molecular switches and machines that have been developed during the last two decades. The focus is on interlocked and non-interlocked systems that display highly controlled large amplitude motion and the principles that govern their operation. Initially, simple molecular switches and shuttles are described with the chapter finally arriving at complex molecular machines such as motors, ratchets and walking molecules. The importance of understanding the different mechanisms that dictate the operation of switchable molecular machines and their fundamental differences are highlighted throughout the chapter. Chapters Two to Four are devoted to reporting the author’s contributions to novel switchable molecular systems. Chapter Two describes the serendipitous discovery of an ion-pair template which has been exploited in rotaxane formation and the operation of an orthogonal interaction anion-switchable molecular shuttle. The macrocycle moves back and forth along the thread between a cationic pyridinium station and a metal coordinating triazole motif when chloride anions are bound and removed respectively from a palladium centre which is located inside the cavity of the macrocycle. Excellent positional integrity (>98%) of the ring at both stations is achieved due to the orthogonal binding modes in the two states of the shuttle. Chapter Three presents a non-interlocked molecular switch that operates through the manipulation of dynamic covalent chemistry. The switch is comprised of a “two legged”, small organic molecule (a “walking unit”), anchored to a three foothold track via one disulfide and one hydrazone bond. The acid promoted hydrazone exchange allows a specific ratio of the two positional isomers to be achieved at equilibrium. However, the system is also arranged in such a manner that the ratio can be biased towards one positional isomer when the hydrazone exchange is carried out alongside the photoisomerisation (Z  E) of a stilbene motif which is incorporated in the track. The isomerisation alters the relative free energies of the products by increasing the ring strain of one positional isomer with respect to the other, hence introducing bias into the system. The final chapter reports the logical progression of the work presented in Chapter Three and describes the pursuit of a four-station dynamic covalent energy ratchet, of which the net position of the walker unit can be driven away from a steady state, minimum energy distribution by orthogonal disulfide and hydrazone exchange and concomitant stilbene isomerisation. The endeavour towards the successful synthesis of this rather complex molecule is described alongside the principles for its proposed operation. Chapter Two is presented in the form of an article that has already been published in a peer-reviewed journal. No attempt has been made to rewrite this work other than a slight alteration in the order of figures in the text to allow for easier reading and re-formatting to ensure consistency of presentation throughout this thesis. The original paper is reproduced, in its published format in the Appendix. Chapters Two, Three and Four begin with a synopsis to provide a general overview of the work that is presented in addition to a grateful acknowledgement of the contribution of my fellow researchers.

Materiais naturais nanoestruturados, tipo smectita, têm sido amplamente usados em nanocompósitos poliméricos, com ganhos expressivos em muitas propriedades. Porém, devido a sua natureza polar, seu uso em nanocompósitos de poliolefinas apresenta uma série de problemas. Entre esses problemas está a dificuldade de esfoliação na matriz, o que geralmente resulta um sistema não nano-estruturado e, por conseqüência, com pouco ou nenhum ganho em propriedades. Para tentar resolver esse problema, materiais tipo esmectita têm sido modificados com sais de amônio quartenário. Esses, por sua vez, possuem características tóxicas, impedindo seu uso em embalagens de alimentos. Com o objetivo de estudar uma nova alternativa que contorne esses problemas, dois materiais lamelares nano-estruturados, tipo esmectita, contendo grupos alquila ligados por ligação sigma com a rede inorgânica, foram sintetizados. Ambos apresentaram excelente ordem mesoestrutural. Um dos materiais sintetizados, formado por um Alsilsesquioxano lamelar, contendo alto teor de cadeia alquila entre as lamelas inorgânicas, foi usado na formação de compósito de polietileno. Comparativamente, uma argila natural, modificada com sais de amônio quaternário (Cloisite 15A), foi usada para fins comparativos. Os compósitos, então obtidos, foram caracterizados para avaliar diferenças microestruturais, morfológicas e mudanças em suas propriedades mecânicas e reológicas. Comparativamente à argila comercial Cloisite 15A, os compósitos contendo os materiais sintéticos apresentaram reologia diferenciada, melhor resistência ao impacto e ao Tensofissuramento Acelerado pelo Ambiente (ESCR). / Nanostructured natural materials, as smectites, have been widely used in polymeric nanocomposites, with significant gains in many properties. However, due to its polar nature, the use in nanocomposites of polyolefins presents a series of drawbacks. Among these problems, its difficulty exfoliation in the matrix, which generally results in a system not nanostructured and, consequently, with little or no gain on properties. To try to resolve this problem, materials type smectite have been modified with quaternary ammonium salts. These salts, in turn, have toxic characteristics, preventing its use in food packaging. In order to study a new alternative that bypasses these problems, two lamellar nanostructured materials, like smectite, with alkyl groups containing sigma links connected to lamellar inorganic network, were synthesized. Both materials had excellent mesostructural order. One of the synthesized materials, formed by a lamellar Al-silsesquioxane, containing high levels of alkyl chain between the inorganic lamella, was used in the formation of a polyethylene composite. Commercial natural clay, modified with quaternary ammonium salts (Cloisite 15A), was used for comparative purposes. The composites then obtained, were characterized to assess microstructural differences, morphological change, and its mechanical and rheological properties. Comparatively to commercial clay (Cloisite 15A), the composites containing synthetic materials, showed differented rheologics properties, better impact resistance and better Environmental Stress Cracking Resistance (ESCR).

Materiais naturais nanoestruturados, tipo smectita, têm sido amplamente usados em nanocompósitos poliméricos, com ganhos expressivos em muitas propriedades. Porém, devido a sua natureza polar, seu uso em nanocompósitos de poliolefinas apresenta uma série de problemas. Entre esses problemas está a dificuldade de esfoliação na matriz, o que geralmente resulta um sistema não nano-estruturado e, por conseqüência, com pouco ou nenhum ganho em propriedades. Para tentar resolver esse problema, materiais tipo esmectita têm sido modificados com sais de amônio quartenário. Esses, por sua vez, possuem características tóxicas, impedindo seu uso em embalagens de alimentos. Com o objetivo de estudar uma nova alternativa que contorne esses problemas, dois materiais lamelares nano-estruturados, tipo esmectita, contendo grupos alquila ligados por ligação sigma com a rede inorgânica, foram sintetizados. Ambos apresentaram excelente ordem mesoestrutural. Um dos materiais sintetizados, formado por um Alsilsesquioxano lamelar, contendo alto teor de cadeia alquila entre as lamelas inorgânicas, foi usado na formação de compósito de polietileno. Comparativamente, uma argila natural, modificada com sais de amônio quaternário (Cloisite 15A), foi usada para fins comparativos. Os compósitos, então obtidos, foram caracterizados para avaliar diferenças microestruturais, morfológicas e mudanças em suas propriedades mecânicas e reológicas. Comparativamente à argila comercial Cloisite 15A, os compósitos contendo os materiais sintéticos apresentaram reologia diferenciada, melhor resistência ao impacto e ao Tensofissuramento Acelerado pelo Ambiente (ESCR). / Nanostructured natural materials, as smectites, have been widely used in polymeric nanocomposites, with significant gains in many properties. However, due to its polar nature, the use in nanocomposites of polyolefins presents a series of drawbacks. Among these problems, its difficulty exfoliation in the matrix, which generally results in a system not nanostructured and, consequently, with little or no gain on properties. To try to resolve this problem, materials type smectite have been modified with quaternary ammonium salts. These salts, in turn, have toxic characteristics, preventing its use in food packaging. In order to study a new alternative that bypasses these problems, two lamellar nanostructured materials, like smectite, with alkyl groups containing sigma links connected to lamellar inorganic network, were synthesized. Both materials had excellent mesostructural order. One of the synthesized materials, formed by a lamellar Al-silsesquioxane, containing high levels of alkyl chain between the inorganic lamella, was used in the formation of a polyethylene composite. Commercial natural clay, modified with quaternary ammonium salts (Cloisite 15A), was used for comparative purposes. The composites then obtained, were characterized to assess microstructural differences, morphological change, and its mechanical and rheological properties. Comparatively to commercial clay (Cloisite 15A), the composites containing synthetic materials, showed differented rheologics properties, better impact resistance and better Environmental Stress Cracking Resistance (ESCR).

Materiais naturais nanoestruturados, tipo smectita, têm sido amplamente usados em nanocompósitos poliméricos, com ganhos expressivos em muitas propriedades. Porém, devido a sua natureza polar, seu uso em nanocompósitos de poliolefinas apresenta uma série de problemas. Entre esses problemas está a dificuldade de esfoliação na matriz, o que geralmente resulta um sistema não nano-estruturado e, por conseqüência, com pouco ou nenhum ganho em propriedades. Para tentar resolver esse problema, materiais tipo esmectita têm sido modificados com sais de amônio quartenário. Esses, por sua vez, possuem características tóxicas, impedindo seu uso em embalagens de alimentos. Com o objetivo de estudar uma nova alternativa que contorne esses problemas, dois materiais lamelares nano-estruturados, tipo esmectita, contendo grupos alquila ligados por ligação sigma com a rede inorgânica, foram sintetizados. Ambos apresentaram excelente ordem mesoestrutural. Um dos materiais sintetizados, formado por um Alsilsesquioxano lamelar, contendo alto teor de cadeia alquila entre as lamelas inorgânicas, foi usado na formação de compósito de polietileno. Comparativamente, uma argila natural, modificada com sais de amônio quaternário (Cloisite 15A), foi usada para fins comparativos. Os compósitos, então obtidos, foram caracterizados para avaliar diferenças microestruturais, morfológicas e mudanças em suas propriedades mecânicas e reológicas. Comparativamente à argila comercial Cloisite 15A, os compósitos contendo os materiais sintéticos apresentaram reologia diferenciada, melhor resistência ao impacto e ao Tensofissuramento Acelerado pelo Ambiente (ESCR). / Nanostructured natural materials, as smectites, have been widely used in polymeric nanocomposites, with significant gains in many properties. However, due to its polar nature, the use in nanocomposites of polyolefins presents a series of drawbacks. Among these problems, its difficulty exfoliation in the matrix, which generally results in a system not nanostructured and, consequently, with little or no gain on properties. To try to resolve this problem, materials type smectite have been modified with quaternary ammonium salts. These salts, in turn, have toxic characteristics, preventing its use in food packaging. In order to study a new alternative that bypasses these problems, two lamellar nanostructured materials, like smectite, with alkyl groups containing sigma links connected to lamellar inorganic network, were synthesized. Both materials had excellent mesostructural order. One of the synthesized materials, formed by a lamellar Al-silsesquioxane, containing high levels of alkyl chain between the inorganic lamella, was used in the formation of a polyethylene composite. Commercial natural clay, modified with quaternary ammonium salts (Cloisite 15A), was used for comparative purposes. The composites then obtained, were characterized to assess microstructural differences, morphological change, and its mechanical and rheological properties. Comparatively to commercial clay (Cloisite 15A), the composites containing synthetic materials, showed differented rheologics properties, better impact resistance and better Environmental Stress Cracking Resistance (ESCR).

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第21117号 / 工博第4481号 / 新制||工||1696(附属図書館) / 京都大学大学院工学研究科物質エネルギー化学専攻 / (主査)教授 辻 康之, 教授 大江 浩一, 教授 村田 靖次郎 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DFAM

Neuropeptidases are responsible for degradation of signaling peptides in the central nervous system and periphery. Some neuropeptidases have also been shown to play a role as part of the cell’s hydrolytic machinery responsible for breaking down proteins and peptides into amino acids, and these enzymes therefore influence small peptide availability for antigen presentation. A better understanding of how neuropeptidases recognize their substrates could lead to therapeutics that modulate the activity of these important enzymes. Alternatively, re-engineering these enzymes to selectively hydrolyze undesirable peptides could make them attractive as therapeutics themselves. A key question in understanding the activity of these enzymes is how they are able to recognize a variety of seemingly unrelated amino acid sequences as cleavage sites. We are investigating the basis for this general substrate recognition in neuropeptidases using thimet oligopeptidase (TOP) as a model. Crystal structures of TOP in complex with a variety of substrates and inhibitors shed light on the mechanisms underlying substrate recognition and pave the way for re-targeting substrate recognition in these enzymes. Nano test tube particles have been proposed as a means of delivering therapeutics such as enzymes. However, the template synthesis method for nano test tube production does not produce therapeutic quantities. In order to take full advantage of re-engineered neuropeptidases a new method for nano test tube synthesis has been developed. We show that a non-destructive template synthesis methodology can be applied to produce nano test tube particles in quantities useful for therapeutic enzyme immobilization.

High surface area gold electrodes are very good substrates for biosensors, catalysis and drug delivery. Their performance is characterized by good sensitivity, low detection limit and high signal. As a result, extensive research is being carried out in this field using different approaches of fabrication to generate high surface area porous electrodes of different morphology, pore size and structure. The morphology of the electrodes can be changed based on whether the approach involves a template or not, types of metal deposition, method and time of dealloying etc. The deposition of metal can be carried out using various approaches such as electroless deposition, electrochemical deposition, combination of electroless and electrochemical deposition, pulsed laser deposition, laser deposition etc. These electrodes can then be used in electrochemical measurements and their performance compared with an unmodified flat gold electrode. We used a template based approach, combined with electrochemical deposition, to fabricate macroporous, macro-nanoporous and nanoporous gold electrodes. To generate nanopores, in case of macro-nanoporous and nanoporous gold electrodes, we used gold-silver alloy electrochemical deposition method, followed by chemical dealloying. The morphology of electrodes was later observed under HITACHI Scanning Electron Microscope (SEM) and their elemental composition studied using HITACHI Energy Dispersion Spectroscopy (EDS). The electrodes were used in electrochemical measurements and their voltammetric data was compared. These measurements involved the determination of surface area, faradaic current using redox molecules with fast and slow electron transfer and charging current in KCl. Surface adsorption of dopamine was studied and detection of dopamine in the presence of ascorbic acid was carried out.

The void spaces in colloidal crystals (opals, three-dimensional (3D) close-packed arrays of silica nanospheres) and their replicas are used as templates in the fabrication of new nanostructured materials. 3D ordered nanomeshes and nanosphere arrays are readily obtained by chemical and/or electrochemical methods. Using silica opal templates, metals or polymers are infiltrated into the interstices between the silica nanospheres. Subsequent dissolution of the opals with HF solution produces open 3D mesh structures. Metal (such as Ni, Co, Fe, Pd, Au, Ag, and Cu) and conductive polymer (such as polyaniline) meshes are obtained by electrochemical deposition approach, while the nonconductive polymer (such as poly(methyl methacrylate) (PMMA)) meshes are synthesized by chemical polymerization method. Some new types of meshes are fabricated by the conversion of metal meshes and polymer meshes. NiO meshes are formed by oxidizing Ni meshes in the air. The NiO meshes exhibit higher volume occupation fraction than Ni meshes and the nanocrystalline sizes of NiO particles can be adjusted by the oxidation temperature. Due to the mechanical flexibility of polymer meshes, the compression of PMMA meshes produces deformed PMMA meshes which contain oblate pores. These meshes can be again served as templates to prepare new types of colloidal crystals (nanosphere arrays) and specific nanocomposites. By the use of poorly conductive NiO mesh or PMMA mesh arrays as templates, 3D periodic metal nanosphere arrays, such as those of Ni, Co, Au and Pd, are readily fabricated by the electrodeposition method. Metal/NiO or Metal/PMMA composites can also be obtained if the templates are left intact. The magnetic behavior of metal (such as Ni and Co) meshes and sphere arrays has been investigated. These nanoscale arrays show significantly enhanced coercivities compared with bulk metals, due to the size effect of the nanometer dimensions of the components in meshes and sphere arrays. Angle-dependent magnetic properties of Ni and Co sphere array membranes exhibit out-of-plane anisotropy.