Orientador: José Eduardo Cezar Sampaio / Banca: Letícia Helena Theodoro / Banca: Enilson Antonio Sallum / Banca: Luis Carlos Spolidorio / Banca: Joni Augusto Cirelli / Resumo: O objetivo do presente estudo foi avaliar clinicamente e histologicamente o efeito do condicionamento químico da superfície radicular com ácido cítrico (AC), tetraciclina hidroclorada (TTC HCl), e ácido etilenodiaminotetracético (EDTA) na reparação periodontal de defeitos ósseos tipo deiscência em cães. Defeitos tipo deiscência com 5 × 3 mm foram criados cirurgicamente na face vestibular das raízes mesiais dos primeiros molares, segundos e terceiros pré-molares superiores de sete cães. Assim, em cada animal foram criados seis defeitos que foram posteriormente submetidos ao acúmulo de placa por 45 dias. Após este período, foi realizado o exame clínico (baseline) dos dentes envolvidos no experimento e, em seguida, um retalho de espessura total foi rebatido. As superfícies radiculares foram raspadas e os defeitos receberam um dos seguintes tratamentos: I) irrigação com solução salina estéril (controle); II) ácido cítrico (25%, 3 min); III) EDTA (24%, 3 min); IV) tetraciclina hidroclorada (50 mg/ml, 3 min); V) ácido cítrico (3 min) + tetraciclina hidroclorada (3 min); VI) tetraciclina hidroclorada (3 min) + ácido cítrico (3 min). Após três meses de cicatrização, foi realizado o exame clínico final e os animas foram sacrificados para obtenção dos blocos contendo dente e tecidos periodontais adjacentes para análise histológica. Clinicamente, foi verificado que houve uma redução significativa da profundidade de sondagem e um significativo ganho de inserção clínica em todos os grupos após o tratamento dos defeitos (p < 0.05), porém sem diferença estatisticamente significante entre os grupos experimentais (p > 0.05). Em relação aos parâmetros histológicos avaliados, também não foi constatado uma diferença significativa entre os grupos (p > 0.05). A migração epitelial assim como a formação de novo cemento e osso alveolar foram semelhantes em... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: The purpose of this study was to clinically and histologically evaluate the effect of root surface conditioning with citric acid (CA), tetracycline hydrochloride (TTC HCl), and ethylenediaminetetraacetic acid (EDTA) on the periodontal repair of dehiscence-type defects in dogs. Dehiscence defects measuring 5 × 3 mm were surgically created on the buccal aspect of mesial roots of the maxillary first molars and second and third pre-molars of seven mongrel dogs. For each animal, a total of six defects were created and exposed to plaque accumulation for 45 days. After this period, clinical evaluation (baseline) of all teeth was performed and a full thickness buccal flap raised. The root surfaces were scaled and the defects were randomly assigned to one of the following treatments: I) irrigation with sterile saline solution; II) citric acid (25%, 3 min); III) EDTA (24%, 3 min); IV) tetracycline hydrochloride (50 mg/ml, 3 min); V) citric acid (3 min) and tetracycline hydrochloride (3 min); VI) tetracycline hydrochloride (3 min) and citric acid (3 min). After 3 months of healing, the clinical parameters (final) were evaluated and the animals were sacrificed to obtain block sections of the teeth and surrounding tissues for histological analyses. Clinically, all treatments yielded significant improvements in terms of probing depth decrease and attachment clinical level gain compared to baseline values (p < 0.05), however without significant differences among the experimental groups (p > 0.05). Epithelial apical migration as well as newly formed cementum and alveolar bone were similar in all treatment groups. No statistically significant differences were found among the groups in relation to the histological parameters evaluated (p > 0.05). Within the limits of this study, it can be concluded that chemical root surface conditioning combined with flap surgery and root scaling did not have any... (Complete abstract click electronic access below) / Doutor

This diploma thesis focuses on optimization and validation of the method for a mixture of tetracycline antibiotics (oxytetracycline, tetracycline) determination using high performance liquid chromatography with a diode array detector (HPLC–DAD). The aim of this thesis was to determine suitability of the system for the determination of these antibiotics in milk. The theoretical part is focused on individual groups of antibiotics and their mechanism of action, resistances and possibilities of use. Next point of this thesis is legislation, which describes permitted amounts of antibiotics in milk. In this study, the HPLC method and validation parameter is described in detail. The experimental part deals with creation and optimization of the method and its validation. Following validation parameters were verified: system suitability, linearity, method accuracy, limit of detection and quantification, robustness. The results obtained indicate mostly suitable ratio of mobile phase of 0,01 M trifluoracetic acid:methanol:acetonitrile = 80:10:10. The wavelength 355 nm was found as the most feasible for this method after evaluating the result. Determination of robustness showed that the method is robust, and the only significant effect on the robustness was observed in column changes.

Nicotinic acetylcholine receptors (nAChR) are found widely throughout the body. Like all members of the cys-loop family of receptors, nAChRs are composed of five protein subunits, each with a large extra-cellular domain and four transmembrane domains. Together these subunits form a binding domain, transmembrane pore, and selectivity filter. Neuronal nicotinic acetylcholine receptors, formed exclusively from α2-10 and β2-4 subunits, can form in many arrangements and stoichiometries. Each arrangement can have varying binding affinities and channel kinetics, resulting in great modulatory control. α3 and β2 subunit mRNA is found in CA1 interneurons in the stratum radiatum and stratum oriens of the rat hippocampus, and in surprising expression frequency and ratios. Further study of α3 and β2 subunit mRNA injected into Xenopus laevis oocytes yields interesting results about the potential for two α3β2 subtypes. These results were in intriguing, and prompted further study to better characterize and screen the α3β2 nAChR. In order to do so, a model was needed where the α3β2 nAChR could be studied in a more physiologically relevant mammalian environment, with consistent control over α3 and β2 subunit expression ratios, and sufficient protein expression and functionality. To this end, we created a doxycycline inducible HEK-293 cell line, stably transfected with the genetic sequences for the α3 and β2 subunits and NACHO, a transmembrane protein of the neuronal endoplasmic reticulum, which has been shown to mediate the assembly of α3β2 and other nAChRs. This new model is able to induce expression various ratios between α3 and β2 subunits in a consistent, manner, proving to be valuable tool in the characterization and screening of the α3β2 nAChR.

The Chlamydiaceae are widespread pathogens of both humans and animals. Chlamydia trachomatis infection causes blinding trachoma and reproductive complications in humans. Chlamydia pneumoniae causes human respiratory tract infections and atypical pneumonia. Chlamydia suis infection is associated with conjunctivitis, diarrhea, and failure to gain weight in domestic swine. Chlamydial infections in humans and domesticated animals are generally controlled by antibiotic treatment—particularly macrolides (usually azithromycin) and tetracyclines (tetracycline and doxycycline). Tetracycline-containing feed has also been used to limit infections and promote growth in livestock populations, although its use has decreased because of growing concerns about antimicrobial resistance development. Because Sandoz and Rockey published an elegant review of chlamydial anti-microbial resistance in 2010, we will review the following: (i) antibiotic resistance in C. suis, (ii) recent evidence for acquired resistance in human chlamydial infections, and (iii) recent non-genetic mechanisms of antibiotic resistance that may contribute to treatment failure.

Host-associated microbial communities, also known as microbiomes, are essential to the health of their hosts, and disturbance of these communities can negatively impact host fitness. The honey bee gut microbiome is a relatively simple host-associated community that makes an excellent model system for studying microbiome stability. In addition, honey bees are essential agricultural pollinators, so factors that impact their health are important for food security. The presented research focused on the stability of the honey bee gut microbiome in response to disturbance from the antibiotic tetracycline. Tetracycline was chosen because it is the most commonly used antibiotic in beekeeping, and may have negative effects on bees through the disruption of their gut microbiomes. The first study presents a new fecal sampling method for studying the honey bee gut microbiome of individual bees over time. This method accurately represented bacterial community structure in the gut microbiome as determined with 16S rRNA gene amplicon sequencing, as fecal and whole gut samples did not differ significantly for individual bees. The fecal sampling technique was then used to examine changes to individual honey bee gut bacterial communities before and after tetracycline exposure. Minimal differences in gut community structure were detected prior to and five days after tetracycline treatment. However, there was variability in how individual gut microbiomes were affected by tetracycline treatment, highlighting the importance of intraspecific variation in response to disturbance. The second study investigated whether the timing of disturbance during a host's life impacts microbiome community stability. Newly emerged bees were treated with tetracycline, returned to their hive, and recollected 7 or 14 days later. The gut communities of the bees were then characterized using 16S rRNA gene amplicon sequencing. Gut microbiome structure of bees treated with tetracycline at emergence differed from controls both 7 and 14 days after emergence, with the antibiotic-treated bees having lower community richness overall. This study showed that early life disturbance of host-associated microbial communities can influence microbiome structure later in life. The final study describes the occurrence of antibiotic resistance genes (ARGs) in honey bee gut bacterial symbionts from hives across the US. Honey bee gut metagenomes were sampled from hives at 13 apiaries located in a transect from Virginia to Washington, and ARG presence was assessed across the sites. We also specifically quantified the abundances of two common tetracycline resistance genes (tet(B) and tet(M)) across apiaries. ARGs, both for antibiotics used in beekeeping and unrelated antibiotics, were detected in honey bee gut bacteria from all apiaries. Tetracycline resistance genes were the most common across all apiaries, and the abundance of two tetracycline resistance genes varied by apiary. Members of the honey bee gut microbiome contained different proportions of ARGs, but taxa within a single family contained similar proportions, possibly indicating phylogeny plays a role in ARG accumulation. In particular, Gilliamella and Frischella, both in the family Orbaceae, contained the highest percentages of ARGs. The results from this study suggest honey bee bacteria act as reservoirs of ARGs. Overall, the presented research contributes to the field of biology by highlighting the importance of intraspecific variation in host-associated microbial communities and presenting a new method for studying honey bee gut microbiome variation at the individual-level, showing that early life events in honey bees influence microbiome development, and suggesting that honey bee bacterial symbionts have adapted to deal with antibiotic disturbance through the accumulation of ARGs. / Doctor of Philosophy / Nearly all animals, including honey bees, have communities of bacteria that live on and in them. These communities, called microbiomes, are often essential to the health of their hosts. For instance, communities of gut bacteria can be important for breaking down food for digestion. Honey bees have approximately 10 bacterial species that consistently live in their guts and provide these types of services to their host. As with many bacterial communities, these beneficial bacteria can be impacted by exposure to antibiotics, even though antibiotics can also be important for treating or preventing dangerous bacterial infections. In honey bee hives, the antibiotic tetracycline is used to prevent bacterial disease. However, tetracycline may simultaneously be negatively impacting colony health through disruption of the honey bee gut microbiome. The goal of the presented work was to understand how tetracycline impacts the honey bee gut microbiome. In my first chapter, I demonstrate a new fecal sampling method that will allow us to understand how gut microbiomes from individual bees change over time. I first compared the bacteria found in fecal samples to those in the whole guts of bees and found that the bacterial communities of the fecal samples and guts were very similar, indicating that fecal sampling is a good method for studying the honey bee gut microbiome. I then used my fecal sampling method to determine how individual honey bee gut microbiomes respond to antibiotic disturbance over time. I collected fecal samples from adult bees prior to treatment, treated the bees with tetracycline, and after five days of being maintained in the lab, recollected fecal samples. My results showed few changes to the bacterial communities before and after treatment, suggesting some honey bee gut microbiomes may be resistant to tetracycline. In my second chapter, I addressed whether exposure to antibiotics early in life had long-term impacts on the gut microbiome. I treated bees at the start of adulthood with tetracycline, returned the bees to their hive for 7 or 14 days, and assessed their microbiome. Tetracycline treatment at the beginning of adulthood changed the gut microbiome later in life, as the microbiomes of tetracycline-treated bees and controls differed from one another both 7 and 14 days after exposure. This chapter shows that disturbances to microbiomes during early life can also affect microbiomes later. My third chapter addressed how honey bee bacteria have adapted to antibiotic use by identifying antibiotic resistance genes (ARGs) in honey bee gut bacteria from 13 hives located in a transect across the US from the state of Washington to Virginia. I found a variety of antibiotic resistance genes in honey bee gut bacteria, both associated with beekeeping and likely environmental contamination. The prevalence of antibiotic resistance genes in honey bee bacteria may help us track antibiotic resistance in the environment. Ultimately, my dissertation contributes to our understanding of how antibiotic use affects honey bees by changing their gut microbiome.

Doctor of Philosophy / Department of Diagnostic Medicine/Pathobiology / Harvey Morgan Scott / A randomized controlled field trial was designed to evaluate the effects of two treatment strategies on ceftiofur and tetracycline resistances in feedlot cattle. The two strategies consisted of administering ceftiofur crystalline-free acid administration (CCFA) at either one or else all of the steers within a pen, and subsequent feeding/not feeding of therapeutic doses of chlortetracycline. Both strategies were hypothesized to reduce ceftiofur resistance. The effects of treatment strategies were evaluated via metagenome-based and culture-based assays. In this 26-day study, 176 steers were allocated to 16 pens of 11 steers each. The two strategies were randomly assigned to the pens in a two-way full-factorial manner resulting in four treatment groups. The blaCMY-2, blaCTX-M, tet(A), tet(B), and 16S rRNA gene copies/g feces were quantified using qRT-PCR from fecal community DNA. Antimicrobial susceptibility profiles were determined using microbroth dilution technique from the non-type-specific (NTS) E. coli isolates (n=1,050). The NTS E. coli DNA was screened for the presence of blaCMY-2, tet(A), and tet(B) genes. Pens in which all the steers received CCFA treatment showed an increase in blaCMY-2 and blaCTX-M log10 gene copies/g feces and in the proportion of ceftiofur-resistant and blaCMY-2 positive NTS E. coli. This was in contrast to the pens where only one animal received CCFA treatment. There was a significant decrease in quantities of tetracycline genes in community DNA in pens where all animals received CCFA treatment. In contrast to metagenome-based assay results, culture-based assays indicated an increase in the proportion of tetracycline resistant NTS E. coli upon CCFA treatment. Thereafter, chlortetracycline administration led to rapid expansion both of ceftiofur (blaCMY-2, blaCTX-M) and tetracycline [tet(A) and tet(B)] log10 gene copies/g feces. Chlortetracycline treatment delayed the return of the ceftiofur resistance prevalence to baseline among NTS E. coli and thus did not lead to the hypothesized decrease in ceftiofur resistance. Our data suggest that chlortetracycline use is contraindicated when attempting to avoid expansion of resistance to critically important 3rd generation cephalosporins in feedlot cattle. Further studies are required to better establish the animal-level effects of co-housing antimicrobial-treated and non-treated animals together at varying ratios on the levels of antimicrobial resistance.

The suprachiasmatic nucleus (SCN) of the anterior hypothalamus has long been considered a master circadian pacemaker that drives rhythms in physiology and behavior in mammals. The recent discovery of self-sustained and cell-autonomous circadian oscillators in peripheral tissues has challenged this position. This dissertation tested the general hypothesis that the SCN has properties that distinguish it from other oscillators, thereby positioning it atop a circadian hierarchy. The general approach was to compare the consequences of altering the molecular circadian clock on tissue-autonomous rhythmicity in mice. In the first experiments, the role of the SCN as a master clock was tested by manipulating the expression of a circadian gene in the brain. Specifically, the expression of the short period tau mutation of casein kinase-1-epsilon (CK1ε) was controlled in an anatomically- and a temporally-specific manner via a tetracycline transactivator regulatory system. This inducible expression of CK1εtau affected the period of activity rhythms when expressed in the SCN, but did not affect the tissue-autonomous rhythmic properties in the peripheral tissues. Second, real-time bioluminescence imaging of tissues from PER2::LUCIFERASE mice revealed that period and phase of different circadian oscillators were tissue specific. Various circadian gene mutations (Cry1-/-, Cry2-/-, Cry1-/-;Cry2-/-, Clock∆19/∆19) produced little difference in rhythmic properties between the SCN and peripheral oscillators, although Cry1-/- SCN had more robust and persistent rhythms compared with the periphery. Third, the loss of Bmal1, which produces behavioral arrhythmicity, eliminated rhythms in the peripheral tissues, but not in the SCN. Bmal1-/- SCN rhythms were highly variable in period and amplitude, fitting a stochastic, but not a deterministic model of rhythm generation. Unlike mutations in other circadian genes, rhythmicity was completely abolished in single SCN neurons in Bmal1-/- mice, indicating that rhythms in Bmal1-/- SCN tissue are a property of the tissue organization rather than an averaging of single-cell autonomous rhythms. The SCN, therefore, has a unique anatomical organization that contributes to long-term stability and temporal organization of the circadian hierarchy.

Le vétérinaire aide le producteur laitier à garder son troupeau en santé. Lorsqu’une vache est malade, il peut prescrire des antibiotiques. Le cas échéant, le lait de la vache traitée aux antibiotiques est jeté. Il n’est donc pas vendu pour consommation. Tout le lait produit est analysé avant d’être pasteurisé et transformé afin de s’assurer que les produits laitiers ne contiennent pas de résidus d’antibiotiques. Si les analyses indiquent que le lait renferme des traces d’antibiotiques, il est jeté et le producteur en cause doit assumer la perte. Les épreuves de dépistage actuelles de ces résidus médicamenteux sont onéreuses et inapplicables sur le terrain. Pour résoudre cette problématique aux pieds de la vache, la solution proposée dans ce projet est la fabrication d’un kit de détection basé sur les polymères à empreinte moléculaire. Il s’agit de polymères dont la conformation moléculaire est complémentaire à celle des antibiotiques. Dans ce projet, il est question d’améliorer l’efficacité des épreuves de dépistages des résidus de tétracyclines en augmentant le nombre de sites d’interaction entre l’antibiotique et des polyesters. Trois polymères sont utilisés portant respectivement des groupements aromatiques, carboxyliques et hydroxyles. Une étude antérieure dans notre laboratoire avait déjà donné un pourcentage de rétention de tétracycline de 50% pour une composition de 1/3 PLAOH- 1/3 PLACOOH- 1/3 PLAOBn. Avec des ajustements, le pourcentage passe à 38.93 % pour une composition de 1/4 PLAOH- 1/2 PLACOOH- 1/4 PLAOPh, de 44.81 % pour une composition de 1/4 PLACOOH- 1/2 PLAOH- 1/4 PLAOPh, de 66.34 %pour une composition de 1/4 PLAOH- 1/4 PLACOOH- 1/2 PLAOPh et de 78.07 % pour une composition de 1/6 PLAOH- 1/6 PLACOOH- 2/3 PLAOPh. Notre hypothèse était que la présence accrue du groupement phényle augmenterait le nombre de sites d’interaction spécifique avec l’antibiotique augmentant ainsi le pourcentage de rétention de l’antibiotique à travers les MIP. Les résultats ont confirmé cette hypothèse. / The veterinarian is helping the dairy farmer to keep his flock healthy. When a cow is sick, he may prescribe antibiotics. But in that case, the cow milk treated with antibiotics is discarded, and not sold for consumption. All milk products are analyzed before being pasteurized and processed to ensure that dairy products do not contain residues of antibiotics. If the analyses show that milk contains traces of antibiotics, it is discarded and the producer must bear the loss. On place, the current screening tests for drug residues are expensive and inapplicable. To resolve this problem at the feet of the cow, the solution proposed in this project is the production of a detection kit based on molecular imprinted polymers. These are polymers whose molecular conformation is complementary to that of antibiotics. This project is about improving the effectiveness of screening tests for residues of tetracyclines by increasing the number of interaction sites between the antibiotic and polyester. Three polymers are used respectively, aromatic, carboxyl and hydroxyl groups. A previous study in our laboratory had already shown a tetracycline retention percentage of 50% for a composition of 1 / 3 PLAOH-1 / 3 PLACOOH-1 / 3 PLAOBn. After variation in the polymers ratio, the percentage obtained is, 38.93 % for a composition of 1 / 4 PLAOH-1 / 2 PLACOOH-1 / 4 PLAOPh, 44.81 % for a composition of 1 / 4 PLACOOH- 1 / 2 PLAOH- 1 / 4 PLAOPh, 66.34 % for a composition of 1/4 PLAOH- 1/4 PLACOOH- 1/4 PLAOPh and 78.07 % for a composition of 1/6 PLAOH- 1 / 6 PLACOOH- 2 / 3 PLAPh. Our hypothesis was that the increase of the amount of the phenyl group, increases the number of specific interaction sites with the antibiotic, and so increases the percentage of retention of the antibiotic through the MIP. The results confirmed this hypothesis.

Doctor of Philosophy / Department of Diagnostic Medicine and Pathobiology / Harvey Morgan Scott / The use of antibiotics in food animals is of major concern as a purported cause of antimicrobial resistance (AMR) in human pathogens; as a result, alternatives to in-feed antibiotics such as heavy metals have been proposed. The effect of copper and CTC supplementation in weaned pigs on AMR in the gut microbiota was evaluated. Four treatment groups: control, copper, chlortetracycline (CTC), and copper plus CTC were randomly allocated to 32 pens with five pigs per pen. Fecal samples (n = 576) were collected weekly from three pigs per pen over six weeks and two Escherichia coli isolates per sample were tested phenotypically for antimicrobial and copper susceptibilities and genotypically for the presence of tetracycline (tet), copper (pcoD) and ceftiofur bla[subscript]C[subscript]M[subscript]Y₋₂) resistance genes. CTC-supplementation significantly increased tetracycline resistance and susceptibility to copper when compared with the control group. Copper supplementation decreased resistance to most of the antibiotics, including cephalosporins, over all treatment periods. However, copper supplementation did not affect minimum inhibitory concentrations of copper or detection of pcoD. While tetA and bla[subscript]C[subscript]M[subscript]Y₋₂ genes were associated with a higher multi-drug resistance (MDR), tetB and pcoD were associated with lower MDR. Supplementations of CTC or copper alone were associated with increased tetB prevalence; however, their combination was paradoxically associated with reduced prevalence. These studies indicate that E. coli isolates from the weaned pigs studied exhibit high levels of antibiotic resistance with diverse multi-resistant phenotypic profiles. In a related study, total fecal community DNA (n = 569) was used to detect 14 tet genes and to quantify gene copies of tetA, tetB, pcoD and bla[subscript]C[subscript]M[subscript]Y₋₂. CTC and copper plus CTC supplementation increased both the prevalence and gene copies of tetA, while decreasing both the prevalence and gene copies of tetB, when compared with the control group. The diversity of tet genes were reduced over time in the gut bacterial community. The roles of copper supplementation in pig production and pco-mediated copper resistance in E. coli need to be further explored since a strong negative association of pcoD, with both tetA and bla[subscript]C[subscript]M[subscript]Y₋₂, suggests there exist opportunities to select for a more innocuous resistance profile.

Master of Science / Department of Biomedical Science / H. Morgan Scott / The modern phenomenon of increasing prevalence of antibiotic resistance in clinically relevant bacteria threatens humanity’s ability to use antibiotics to treat infection in both humans and animals. Despite the marked complexity of bacterial evolution, there is tremendous importance in unfolding the process by which antibiotic resistance genes emerge, disperse, and persist in the natural world. This thesis investigates certain aspects of this process in two experimental studies that differ primarily by scale but also by methodology. The first study examined the long-term annual prevalence of ceftiofur and tetracycline resistance in Canadian beef cattle from 2002 to 2011 at both phenotypic and genotypic levels. Ceftiofur was present at a very low prevalence (<4%) that did not statistically increase over the decade (p<0.05). Relative proportions of tetracycline genes tet(A), tet(B), and tet(C) also did not significantly change over the observation period. However, it was surprising that almost 20% of isolates recovered from nonselective agar harbored tet(C) given that current literature generally indicates that tet(C) is significantly less prevalent than tet(A) or tet(B). The usage of historical samples in addition to parallel selective plating using agar supplemented with antibiotics provided insight into systemic bias present in common microbial approaches. Long-term sample freezing significantly diminished the recoverability of E. coli over time. Additionally the usage of selective MacConkey agar containing tetracycline biased the proportions of tetracycline genes to over-represent the tet(B) gene in commensal E. coli compared to nonselective MacConkey agar. The second study attempted to explain the short-term selection effects of antibiotic treatment on the overall ecological fitness of commensal E. coli using bacterial growth parameters estimated from spectrophotometric growth curves as a simple surrogate of general fitness. Treating cattle with either tetracycline or ceftiofur was found to not only select in favor of tetracycline resistant bacteria, but also increased the overall fitness among the tetracycline resistant population. However, growth curves were unable able to explain why transiently selected resistant bacteria were eventually replaced by susceptible bacteria once the selection pressure was removed.