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Arduino Verkstad AB, the Swedish branch of Arduino, has developed a prototype that demonstrates a smart transducer network with a self-configurable communication protocol. The protocol is called I2C+, since it is based upon I2C. One of the possible areas of application is the EU funded PELARS project, where Arduino Verkstad is responsible for creating educational tools. Within the PELARS project, a maximum number of transducer modules is expected to be 20 modules, connected at the same time.The aim of this thesis was to create a testing tool and a test suite for the prototype system, which later could be used and also further developed by engineers at Arduino Verkstad, during the development of the final product. Though the testing tool was primarily needed for this particular system, it was considered desirable if it could be reused for similar projects as well.It was relevant to create the testing tool and the test suite in order to analyse the validity of the I2C+ protocol, which might become Arduino's future standard in connectivity between smart transducers. The performance of the I2C+ protocol also affects the implementation of the smart transducer system within the PELARS project.This work has been guided by a specification of requirements and also by a systematic top-down approach of solving several subproblems. A testing tool and a test suite was created, which serves as a proof-of-concept. The testing tool has a modular design, which makes the solution reusable for other purposes. The testing tool and the test suite was validated by using Arduino's prototype as a test object. Although only 10 transducer modules was used during these tests, the results showed that the prototype does not perform well for a growing number of modules. Therefore, improvement of the system and further testing is advised.

The objectives of this research were to characterize insulin-like growth factor-I (IGF-I) gene expression in cattle, to determine how IGF-I gene expression is affected by nutritional intake and growth hormone (GH) in cattle, and to identify the regulatory DNA region that mediates GH stimulation of IGF-I gene expression. It was found that transcription of the IGF-I gene in cattle was initiated from both exon 1 and exon 2, generating class 1 and class 2 IGF-I mRNA, respectively. Both classes of IGF-I mRNA appeared to be ubiquitously expressed, with the highest level in liver and with class 1 being more abundant than class 2 in all tissues examined. Class 1 IGF-I mRNA may be also translated more efficiently than class 2 IGF-I mRNA. Liver expression of IGF-I mRNA was decreased (P < 0.01) by food deprivation in cattle, and this decrease was due to an equivalent decrease in both classes of IGF-I mRNA. Liver expression of IGF-I mRNA was increased (P < 0.01) by GH, and this increase resulted mainly from increased expression of class 2 IGF-I mRNA. Using cotransfection analyses, a ~700 bp chromosomal region ~75 kb 5' from the first exon of the human IGF-I gene was found to enhance reporter gene expression in the presence of constitutively active signal transducer and activator of transcription 5 (STAT5) proteins, transcription factors that are known to be essential for GH-increased IGF-I gene expression. This 700 bp DNA region contains two STAT5-binding sites that appear to be conserved in mammals including cattle. Electrophoretic mobility shift assays and cotransfection analyses confirmed their ability to bind to STAT5 proteins and to mediate STAT5 activation of gene expression, respectively. Chromatin immunoprecipitation assays indicated that overexpressed constitutively active STAT5b protein bound to the chromosomal region containing these two STAT5-binding sites in Hep G2 cells, and this binding was associated with increased expression of IGF-I mRNA. These two STAT5-binding sites were also able to mediate GH-induced STAT5 activation of gene expression in reconstituted GH-responsive cells. These results together suggest that the distal DNA region that contains two STAT5-binding sites may mediate GH-induced STAT5 activation of IGF-I gene transcription in vivo. / Ph. D.

Ionomeric polymer transducers exhibit electromechanical coupling capabilities. The transport of charge due to electric stimulus is the primary mechanism of actuation for a class of polymeric active materials known as ionomeric polymer transducers (IPTs). The research presented in this dissertation focuses on modeling the cation transport and cation steady state distribution due to the actuation of an IPT. Ion transport in the IPT depends on the morphology of the hydrated Nafion membrane and the morphology of the metal electrodes. Recent experimental findings show that adding conducting powders at the polymer-conductor interface increases the displacement output. However, it is difficult for a traditional continuum model based on transport theory to include morphology in the model. In this dissertation, a two-dimensional Monte Carlo simulation of ion hopping has been developed to describe ion transport in materials that have fixed and mobile charge similar to the structure of the ionic polymer transducer. In the simulation, cations can hop around in a square lattice. A step voltage is applied between the electrodes of the IPT, causing the thermally-activated hopping between multiwell energy structures. By sampling the ion transition time interval as a random variable, the system evolution is obtained. Conducting powder spheres have been incorporated into the Monte Carlo simulation. Simulation results demonstrate that conducting powders increase the ion conductivity. Successful implementation of parallel computation makes it possible for the simulation to include more powder spheres to find out the saturation percentage of conducting powders for the ion conductivity. To compare simulation results with experimental data, a multiscale model has been developed to increase the scale of Monte Carlo simulation. Both transient responses and steady state responses show good agreement with experimental measurements. / Ph. D.

Conventional free radical polymerization of n-butyl acrylate with 3-[[2-(methacryloyloxy)ethyl](dimethyl)-ammonio]-1-propanesulfonate (SBMA) and 2-[butyl(dimethyl)amino]ethyl methacrylate methanesulfonate (BDMAEMA MS), respectively, yielded zwitterionomers and cationomers of comparable chemical structures. Differential scanning calorimetry (DSC), small-angle X-ray scattering (SAXS), and atomic force microscopy (AFM) revealed that zwitterionomers promoted more well-defined microphase-separation than cationic analogs. Dynamic mechanical analyses (DMA) of the copolymers showed a rubbery plateau region due to physical crosslinks between charges for zwitterionomers only. We attributed improved microphase-separation and superior elastomeric performance of the zwitterionomers to stronger association between covalently tethered charged pairs. Zwitterionomer / ionic liquid binary compositions of poly(nBA-co-SBMA) and 1-ethyl-3-methylimidazolium ethylsulfate (EMIm ES) were prepared using both the 'swelling– and the –cast with– methods. Dynamic mechanical analysis revealed that the 'swollen– membranes maintained their thermomechanical performance with up to 18 wt% EMIm ES incorporation, while that of the –cast with– membranes decreased gradually as the ionic liquid concentration in the composite membranes increased. Small-angle X-ray scattering results indicated that the 'swollen– and the –cast with– membranes have different morphologies, with the ionic liquid distributed more evenly inside the –cast with– membranes. Impedance spectroscopy results showed that the –cast with– membranes had better ionic conductivity than the 'swollen– membrane at high ionic liquid concentration, in agreement with our proposed model. The results indicated that the different processing methods had a significant impact on thermomechanical properties, ionic conductivities, as well as morphologies of the zwitterionomer / ionic liquid binary compositions. Reversible addition-fragmentation chain transfer polymerization (RAFT) strategy afforded the synthesis of well-defined poly(sty-b-nBA-b-sty). 2-(Dimethylamino)ethyl acrylate (DMAEA), a tertiary amine-containing acrylic monomer, exhibited radical chain transfer tendency toward itself, which is undesirable in controlled radical polymerization processes. We employed a higher [RAFT] : [Initiator] ratio of 20 : 1 to minimize the impact of the chain transfer reactions and yielded high molecular weight poly[sty-b-(nBA-co-DMAEA)-b-sty] with relatively narrow PDIs. The presence of the tertiary amine functionality, as well as their quaternized derivatives, in the central blocks of the triblock copolymers afforded them tunable polarity toward polar guest molecules, such as ionic liquids. Gravimetric measurements determined the swelling capacity of the triblock copolymers for EMIm TfO, an ionic liquid. DSC and DMA results revealed the impact of the ionic liquid on the thermal and thermomechanical properties of the triblock copolymers, respectively. Composite membranes of DMAEA-derived triblock copolymers and EMIm TfO exhibited desirable plateau moduli of ~ 100 MPa, and were hence fabricated into electromechanical transducers. RAFT synthesized poly(sty-b-nBA-b-sty) triblock copolymer phase separates into long-range ordered morphologies in the solid state due to the incompatibility between the poly(nBA) phases and the poly(sty) phases. The incorporation of DMAEA into the central acrylic blocks enabled subsequent quaternization of the tertiary amines into sulfobetaine functionalities. Both DSC and DMA results suggested that the electrostatic interactions in the low Tg central blocks of poly(sty-b-nBA-b-sty) enhanced block copolymer phase separation. SAXS results indicated that the presence of the sulfobetaine functionalities in acrylate phases increased electron density differences between the phases, and led to better defined scattering profiles. TEM results confirmed that the block copolymers of designed molecular weights exhibited lamellar morphologies, and the lamellar spacing increased with the amount of electrostatic interactions for the zwitterionic triblock copolymers. Acrylic radicals are more susceptible to radical chain transfer than their styrenic and methacrylic counterparts. Controlled radical polymerization processes (e.g. RAFT, ATRP and NMP) mediate the reactivity of the acrylic radical and enable the synthesis of well-defined linear poly(alkyl acrylate)s. However, functional groups such as tertiary amine and imidazole on acrylic monomers interfere with the controlled radical polymerization of functional acrylates. Model CFR and RAFT polymerization of nBA in the presence of triethylamine and N-methyl imidazole revealed the interference of the functional group on the polymerization of acrylate. Various RAFT agents, RAFT agent to initiator ratios, degree of polymerization and monomer feed concentrations were screened with an imidazole-containing acrylate for optimized RAFT polymerization conditions. The results suggest that the controlled radical polymerization of functional acrylates, such as 2-(dimethylamino)ethyl acrylate and 4-((3-(1H-imidazole-1-yl)propanoyl)oxy)-butyl acrylate (ImPBA), remained challenging. / Ph. D.

Ionic polymer transducers (IPTs) are soft sensors and actuators which operate through a coupling of micro-scale chemical, electrical, and mechanical mechanisms. The use of ionic liquid as solvent for an IPT has been shown to dramatically increase transducer lifetime in free-air use, while also allowing for higher applied voltages without electrolysis. This work aims to further the understanding of the dominant mechanisms of IPT actuation and how these are affected when an ionic liquid is used as solvent. A micromechanical model of IPT actuation is developed following a previous approach given by Nemat-Nasser, and the dominant relationships in actuation are demonstrated through an analysis of electrostatic cluster interactions. The elastic modulus of Nafion as a function of ionic liquid uptake is measured using uniaxial tension tests and modeled in a micromechanical framework, showing an excellent fit to the data. Charge transport is modeled by considering both the cation and anion of the ionic liquid as mobile charge carriers, a phenomenon which is unique to ionic liquid IPTs as compared to their water-based counterparts. Numerical simulations are performed using the finite element method, and a modified theory of ion transport is discussed which can be extended to accurately describe electrochemical migration of ionic liquid ions at higher applied voltages. The results presented here demonstrate the dominant mechanisms of IPT actuation and identify those unique to ionic liquid IPTs, giving directions for future research and transducer development. / Master of Science

In vitro systems like those used for in vitro embryo production are invaluable for our understanding of embryogenesis and the processes that regulate it. However, extensive research has also highlighted that in vitro produced embryos negatively differ from their in vivo counterparts in various ways. Not surprisingly, there is ~20% decrease in pregnancy success from pregnancies established using in vitro produced embryos. Therefore, much research has relied on attempting to produce a better in vitro embryo that more closely resembles their in vivo counterparts. Our laboratory has investigated this by supplementing a cytokine, interleukin-6 (IL6), during in vitro embryo culture. My dissertation work expands upon those initial efforts by answering more detailed questions related to the biological role of IL6 during cattle embryogenesis. In the work presented herein, IL6 supplementation during in vitro culture was able to transform the transcriptome of resulting conceptuses post embryo transfer. The transcriptome of these conceptuses included an abundance of genes associated with survival. Indeed, we witnessed IL6-treated conceptuses resulted in a 20% increased survival rate and were longer than their non-treated counterparts. In the second research project, we employed CRISPR-Cas9 genome editing technology to understand the embryo phenotype after part of the IL6 receptor responsible for signal transduction, interleukin-6 signal transducer (IL6ST), is disrupted. We discovered that IL6ST is required for development before the blastocyst stage. In addition, IL6ST disrupted blastocysts, presumed to contain wildtype, presented with severe, abnormal morphology. Not only did this group of embryos have decreased ICM and TE cell numbers, but they also had an increased occurrence of cells within the TE region that were negative for its traditional marker, CDX2. This suggests IL6ST is likely involved in a pathway responsible for determining cell fate identity at the blastocyst stage. Collectively, IL6 in cooperation with IL6ST, is a key controller of embryogenesis in cattle. / Doctor of Philosophy / There are major events that an embryo must successfully advance from to continue development to form into an organism capable of survival after birth. Over 30% of pregnancies in cattle and humans will fail within the first 30 days of gestation. This time period coincides with several key developmental events that ultimately modify the morphology of the growing embryo. Our laboratory primarily focuses on embryo development around the blastocyst stage. If an embryo advances to this stage, it has a greater likelihood of maintaining viability. Therefore, my dissertation research has focused on early embryonic development from the time of first cleavage (~day 2 of gestation) through embryo elongation (~day 15 of gestation), which encompasses the blastocyst stage. Within this time frame, I have been investigating embryonic effects after supplementation of a protein, interleukin-6 (IL6). Previously, our laboratory has identified IL6 to cause favorable impacts on the developing embryo, but its mode of action was unknown. Therefore, my dissertation research has investigated the mechanistic actions of IL6, and its beta receptor subunit, interleukin-6 signal transducer (IL6ST). In my first research project, we discovered that supplementing IL6 during in vitro embryo culture resulted in increased embryo elongation and survival. In my second research project, we found IL6ST is an absolute requirement for embryo survival to the blastocyst stage. Together, these results indicate IL6 is a very important protein needed for sustained pregnancy viability.

Yes / Cell migration is a key contributor to wound repair. This study presents findings indicating that the liquid crystal based cell traction force transducer (LCTFT) system can be used in conjunction with a bespoke cell traction force mapping (CTFM) software to monitor cell/surface traction forces from quiescent state in real time. In this study, time-lapse photo microscopy allowed cell induced deformations in liquid crystal coated substrates to be monitored and analyzed. The results indicated that the system could be used to monitor the generation of cell/surface forces in an initially quiescent cell, as it migrated over the culture substrate, via multiple points of contact between the cell and the surface. Future application of this system is the real-time assaying of the pharmacological effects of cytokines on the mechanics of cell migration.

L’hypoxie est une caractéristique commune des tumeurs solides et l’une des spécificités du micro environnement tumoral. L’hypoxie tumorale joue un rôle important dans l’angio génèse, la progression maligne, le développement de métastases, la chimio/radio-résistance et favorise l’échappement au système immunitaire du fait de l’émergence de variant tumoraux avec un potentiel de survie et de résistance à l’apoptose augmenté. Cependant, très peu de travaux ont étudié l’impact de l’hypoxie tumorale sur la régulation de la susceptibilité des tumeurs à la lyse induite par la réponse immune cytotoxique. Nous nous sommes donc demandé si l’hypoxie pouvait conférer aux tumeurs une résistance à la lyse induite par les lymphocytes T cytotoxiques (CTL). Nous avons démontré que l’exposition de cellules cibles tumorales à l’hypoxie possédait un effet inhibiteur sur la lyse de ces cellules tumorales par des CTL autologues. Cette inhibition n’est pas associée à des altérations de la réactivité de CTL ou de la reconnaissance des cellules cibles. Cependant, nous avons montré que l’induction hypoxique concomitante de la phosphorylation de STAT3 (pSTAT3) au niveau de la tyrosine 705 et du facteur HIF-1α (Hypoxia Inducible Factor-1 alpha) est liée fonctionnellement à l’altération de la susceptibilité de cellules tumorales bronchiques non à petites cellules (NSCLC) à la mort induite par les CTL. Nous avons aussi montré que la résistance de cellules tumorales bronchiques à la lyse CTL induite par l’hypoxie était associée à une induction d’autophagie dans les cellules cibles. En effet, l’inhibition de l’autophagie empêche la phosphorylation de STAT3 (via l’inhibition de la kinase Src) et restaure la susceptibilité des cellules tumorales hypoxiques à la lyse induite par les CTL. De plus, l’inhibition in vivo de l’autophagie par l’hydroxychloroquine (HCQ) dans le modèle murin portant la tumeur B16F10 and chez les souris vaccinée avec le peptide TRP2 augmente de façon drastique l’inhibition de la croissance tumorale. Collectivement, cette étude établit un nouveau lien fonctionnel entre l’autophagie induite par l’hypoxie et la régulation de la lyse induite par les cellules T spécifique d’antigènes et souligne le rôle majeur de l’autophagie dans le contrôle de la croissance tumorale in vivo.Finalement, étant donné que le la résistance tumorale à la lyse induite par les cellules tueuses est très probablement régulée par de multiples facteurs, nous avons aussi eu pour but d’identifier les micro-ARNs (miRs) régulés par l’hypoxie dans des modèles de NSCLC et de mélanome et leur implication putative dans la régulation de la susceptibilité tumorale à la lyse induite par les cellules T spécifique d’antigènes. Le micro-ARN 210 (miR-210) est ainsi significativement induit de manière dépendante de HIF-1α dans des cellules de NSCLC et de mélanome, et miR-210 est exprimé dans les zones hypoxiques de tissus issus de NSCLC. De plus, nous avons démontré que l’induction de miR-210 par l’hypoxie régule la susceptibilité tumorale à la lyse induite par les CTL en partie grâce à l’inhibition de l’expression de PTPN, HOXA1 et TP53I11, indiquant que miR-210 joue un rôle potentiel dans la régulation de la réponse immune antitumorale. / Hypoxia is a common feature of solid tumors and one of the hallmarks of tumor microenvironment. Tumor hypoxia plays an important role in angiogenesis, malignant progression, metastatic development, chemo-radio resistance and favours immune evasion by the emergence of tumor variants with increased survival and anti-apoptotic potential. There is very little work done on the impact of tumor hypoxia on the regulation of tumor susceptibility to the lysis induced by cytotoxic antitumor response. Therefore, we asked whether hypoxia confers tumor resistance to cytotoxic T lymphocyte (CTL)-mediated killing. We demonstrated that exposure of target cells to hypoxia has an inhibitory effect on the CTL-mediated autologous target cell lysis. Such inhibition was not associated with an alteration of CTL reactivity and tumor target recognition. We also showed that the concomitant hypoxic induction of Signal transducer and activator of transcription 3 (STAT3) phosphorylation on tyrosine 705 residue (pSTAT3) and hypoxia inducible factor 1 alpha (HIF-1α) is functionally linked to the alteration of Non small cell lung carcinoma (NSCLC) target susceptibility to CTL-mediated killing. We also showed that hypoxia-induced resistance of lung tumor to CTL-mediated lysis was associated with autophagy induction in target cells. Inhibition of autophagy resulted in impairment of pSTAT3 (via inhibition Src kinase) and restoration of hypoxic tumor cell susceptibility to CTL-mediated lysis. Moreover, in vivo inhibition of autophagy by hydroxychloroquine (HCQ) in B16F10 tumor bearing mice and mice vaccinated with TRP2 peptide dramatically increased tumor growth inhibition. Collectively, the current study establishes a novel functional link between hypoxia-induced autophagy and the regulation of antigen specific T cell lysis and points to a major role of autophagy in the control of in vivo tumor growth.Finally, as resistance of tumor targets to killer cells is likely to be regulated by multiple factors, we further aimed to identify the microRNA’s regulated by hypoxia in NSCLC and melanoma and their putative involvement in the regulation of tumor susceptibility to antigen-specific CTL-mediated killing. MicroRNA-210 (miR-210) was significantly induced in a HIF-1α dependent manner in NSCLC and melanoma cells and miR-210 was expressed in hypoxic zones of human NSCLC tissues. Moreover, we demonstrated that hypoxia-induced miR-210 regulates tumor cell susceptibility to CTL-mediated lysis in part by suppressing PTPN, HOXA1 and TP53I11 expression indicating that miR-210 plays a potential role in the regulation of anti-tumor immune response.